DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 35742 lin19 uggucauggacuacaUUAUGAGu ||||||| uagaagcgagcuaaaAAUACUCc 2 9 138 160 [dm3:2R:3808048-3808070:+] 0.5910 140 7 -9.61 -0.5847 MIMAT0000364 dme-miR-289 35742 lin19 ucAGCGU-CCGAGGUGAAUUUAUAAAu || || |:|| | | ||||||| cuUCCCAUUGUUCGA--UCAAUAUUUg 2 25 406 430 [dm3:2R:3808316-3808340:+] 0.5349 152 7 -8.49 -0.7665 MIMAT0005465 dme-miR-954 35742 lin19 uguGUGUUGCGUUGUGGGUCu ||: : |:|||||||| cucCAUCUUCCGACACCCAGc 2 19 204 224 [dm3:2R:3808114-3808134:+] 0.5501 154 7 -20.23 -0.4545 MIMAT0005475 dme-miR-961 35742 lin19 uagagucaaugaccaCUAGUUu |||||| uacuucccauuguucGAUCAAu 2 8 404 425 [dm3:2R:3808314-3808335:+] 0.5349 120 6 -8.66 -0.2048 MIMAT0005491 dme-miR-975 35742 lin19 uauGUCCUAC-AUCCUUCACAAau :| || | | ||||||| uucUACGAAGCAAAAAAGUGUUaa 3 21 487 510 [dm3:2R:3808397-3808420:+] 0.5218 127 0 -7.00 -0.1367 MIMAT0005500 dme-miR-984 35742 lin19 uuuaaggUUG--GCAU--AAAUGGAGu ||| :||| |||||||| uucauaaAACUAUGUACGUUUACCUCu 2 17 512 538 [dm3:2R:3808422-3808448:+] 0.4878 150 7 -14.27 -0.4745 MIMAT0012196 dme-miR-2489 35742 lin19 ugacguuUAUGUUGUAUGUUAu ||:| |:||||||| ucgcuguAUGC-AUAUACAAUu 2 16 459 479 [dm3:2R:3808369-3808389:+] 0.5218 153 7 -15.38 -1.0978 MIMAT0012196 dme-miR-2489 35742 lin19 ugacguuUAUGUUGUAUGU-UAu :|||:::||||| || aggggcuGUACGGUAUACAUAUg 2 16 368 390 [dm3:2R:3808278-3808300:+] 0.5276 123 0 -15.29 -0.5850 MIMAT0012216 dme-miR-2501 35742 lin19 aaucggguccgugagGUUUGAAUg :||||||| uaaaaauaucaucaaUAAACUUAg 2 10 48 71 [dm3:2R:3807958-3807981:+] 0.4846 141 7 -9.03 -0.8234 MIMAT0000319 dme-miR-263a 35742 lin19 cacuuAAGAAGGU-C--ACGGUAAUUg ||| ||:| | |||||||| gcuguUUCAUCUAUGCCAGCCAUUAAa 2 20 25 51 [dm3:2R:3807935-3807961:+] 0.4631 153 7 -15.25 -0.8126 MIMAT0000334 dme-miR-92a 35742 lin19 uauccggcccUGUUCACGUUAc | | ||||||| gcuucgcauaAAAUGUGCAAUu 2 13 163 184 [dm3:2R:3808073-3808094:+] 0.5705 144 7 -9.77 -0.6210 MIMAT0000346 dme-miR-282 35742 lin19 uguCUGUUUCGGAUCAUCUCCGAUCUAa ||: || :| || |||||| uucGAUCAAUAUUUGUUUUAACUAGAUu 2 26 416 443 [dm3:2R:3808326-3808353:+] 0.5349 121 6 -12.48 -0.1490 MIMAT0000358 dme-miR-92b 35742 lin19 cguccggcccugauCACGUUAa ||||||| gcuucgcauaaaauGUGCAAUu 2 9 163 184 [dm3:2R:3808073-3808094:+] 0.5705 140 7 -11.07 -0.6210 MIMAT0000389 dme-miR-31b 35742 lin19 guCGAUAAGGCUGUAGA-ACGGu |||:||: ||||| |||| ucGCUGUUU---CAUCUAUGCCa 2 21 23 42 [dm3:2R:3807933-3807952:+] 0.4631 124 0 -19.44 -0.8839 MIMAT0000390 dme-miR-304 35742 lin19 gaguGUAAAUGUUUAACUC-UAAu || ||:: |||||| ||| cgguCAAUUGU--AUUGAGUAUUc 2 20 543 564 [dm3:2R:3808453-3808474:+] 0.4494 120 0 -7.22 -0.3615 MIMAT0000397 dme-miR-125 35742 lin19 agUGUUCAAUCCCAGA-GUCCCu |||| | : ||| ||||| cuACAAAUAGACUUCUGCAGGGg 2 21 350 372 [dm3:2R:3808260-3808282:+] 0.5276 120 0 -17.56 -0.2095 MIMAT0000402 dme-miR-310 35742 lin19 uuuccggcccUUCACACGUUAu || |||||||| gcuucgcauaAAAUGUGCAAUu 2 13 163 184 [dm3:2R:3808073-3808094:+] 0.5705 152 7 -11.35 -0.6210 MIMAT0000403 dme-miR-311 35742 lin19 aguccggccacUUACACGUUAu |||||||||| gcuucgcauaaAAUGUGCAAUu 2 12 163 184 [dm3:2R:3808073-3808094:+] 0.5705 155 7 -14.16 -0.6210 MIMAT0000404 dme-miR-312 35742 lin19 aguccGGCAGAGUU--CACGUUAu :|| | || ||||||| augcuUCGCAUAAAAUGUGCAAUu 2 18 161 184 [dm3:2R:3808071-3808094:+] 0.5705 144 7 -11.02 -0.6173 MIMAT0000405 dme-miR-313 35742 lin19 agcccgacACUUUUCACGUUAu | ||| ||||||| gcuucgcaUAAAAUGUGCAAUu 2 15 163 184 [dm3:2R:3808073-3808094:+] 0.5705 154 7 -9.73 -0.6210 MIMAT0005468 dme-miR-193 35742 lin19 caacccugaaucaUCCGGUCAu |||||||| ucauucaaagaaaAGGCCAGUc 2 10 228 249 [dm3:2R:3808138-3808159:+] 0.5501 145 7 -14.34 -0.4985 MIMAT0005474 dme-miR-960 35742 lin19 cgaUACGUUAGA-CCUUAUGAGu | ||:| || ||||||| uagAAGCGAGCUAAAAAUACUCc 2 20 138 160 [dm3:2R:3808048-3808070:+] 0.5910 150 7 -11.66 -0.5847 MIMAT0005477 dme-miR-963 35742 lin19 cuUUGUUGGACUAUAAAUGGA-ACa ||| |: | | :||||||| || aaAACUAUGU-ACGUUUACCUCUGg 2 23 517 540 [dm3:2R:3808427-3808450:+] 0.4878 128 0 -11.77 -0.5362 MIMAT0005478 dme-miR-964 35742 lin19 uucaauucgaggggaUAAGAUu |||||| uauacaauuauuauaAUUCUAc 2 8 471 492 [dm3:2R:3808381-3808402:+] 0.5218 120 6 -3.21 -0.1032 MIMAT0005501 dme-miR-927 35742 lin19 ccAU-UUCGCAUCCUUAAGAUuu || || : | ||||||| uaUACAAUUAUUAUAAUUCUAcg 3 21 471 493 [dm3:2R:3808381-3808403:+] 0.5218 127 0 -3.48 -0.1389 MIMAT0005507 dme-miR-137 35742 lin19 gaugcacaUAAGA-G-UUCGUUau ||||| | |||||| uuauuauaAUUCUACGAAGCAAaa 3 15 478 501 [dm3:2R:3808388-3808411:+] 0.5218 132 0 -9.76 -0.1064 MIMAT0005512 dme-miR-993 35742 lin19 ucuauggacAUCUCUGCUCGAag |||| :|||||| cauucgaacUAGAAGCGAGCUaa 3 15 129 151 [dm3:2R:3808039-3808061:+] 0.5910 138 0 -13.66 -0.1211

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cul1 RAID00006252 dme-miR-310-3p miRNA MIMAT0000402 Cul1 mRNA 35742 Prediction 0.2202 Cul1 RAID00113503 dme-miR-31b-5p miRNA MIMAT0000389 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID00332228 dme-miR-984-5p miRNA MIMAT0005500 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID00368529 dme-miR-963-5p miRNA MIMAT0005477 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID00497484 dme-miR-92b-3p miRNA MIMAT0000358 Cul1 mRNA 35742 Prediction 0.2202 Cul1 RAID00705662 dme-miR-263a-5p miRNA MIMAT0000319 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID01025389 dme-miR-954-5p miRNA MIMAT0005465 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID01281427 dme-miR-137-3p miRNA MIMAT0005507 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID01549556 dme-miR-313-3p miRNA MIMAT0000405 Cul1 mRNA 35742 Prediction 0.2202 Cul1 RAID01920678 dme-miR-7-5p miRNA MIMAT0000112 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID02110058 dme-miR-927-5p miRNA MIMAT0005501 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID02161218 dme-miR-125-5p miRNA MIMAT0000397 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID02390773 dme-miR-312-3p miRNA MIMAT0000404 Cul1 mRNA 35742 Prediction 0.2202 Cul1 RAID02613027 dme-miR-193-3p miRNA MIMAT0005468 Cul1 mRNA 35742 Prediction 0.2202 Cul1 RAID02628659 dme-miR-282-5p miRNA MIMAT0000346 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID02912775 dme-miR-960-5p miRNA MIMAT0005474 Cul1 mRNA 35742 Prediction 0.2202 Cul1 RAID03070041 dme-miR-304-5p miRNA MIMAT0000390 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID03224213 dme-miR-311-3p miRNA MIMAT0000403 Cul1 mRNA 35742 Prediction 0.2202 Cul1 RAID03349075 dme-miR-993-3p miRNA MIMAT0005512 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID03356016 dme-miR-14-3p miRNA MIMAT0000120 Cul1 mRNA 35742 Prediction 0.1828 Cul1 RAID03603815 dme-miR-92a-3p miRNA MIMAT0000334 Cul1 mRNA 35742 Prediction 0.2202 Cul1 RAID03607523 dme-miR-964-5p miRNA MIMAT0005478 Cul1 mRNA 35742 Prediction 0.1828