DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 36791 Lis-1 auaGUAAAGUAUACGUUGCAUUUAUgu :||| || | |:| : |||||| auaUAUUACAAAAGUACUAUAAAUAaa 3 25 1404 1430 [dm3:2R:12072585-12072611:+] 0.5503 148 0 -5.92 -0.3002 MIMAT0000343 dme-miR-280 36791 Lis-1 auaGUA-AAGUAUACGUUGCAUUUAUgu :|| | :| || :| : |||||| accUAUAUAUAAAUAUACUAUAAAUAau 3 25 939 966 [dm3:2R:12072120-12072147:+] 0.5895 135 0 -4.50 -0.1405 MIMAT0005464 dme-miR-iab-4as-3p 36791 Lis-1 auUUGCAUAUGACUUACAUAGg || ||| | :||||||| agAAAUCAUA-UAGAUGUAUCu 2 21 983 1003 [dm3:2R:12072164-12072184:+] 0.5233 150 7 -9.19 -0.4479 MIMAT0005465 dme-miR-954 36791 Lis-1 ugUGUGUUGCGUUGUGGGUCu | |:| : |:|||||| aaAAAUAUGUUUAUACCCAGa 2 20 1119 1139 [dm3:2R:12072300-12072320:+] 0.4571 131 6 -17.61 -0.1088 MIMAT0005488 dme-miR-972 36791 Lis-1 cgGAUUUAUAAGCA---UAACAUGu | || ||||: | ||||||| aaCGAAUUAUUUAUUUAAUUGUACg 2 21 200 224 [dm3:2R:12071381-12071405:+] 0.5038 155 7 -11.75 -0.7649 MIMAT0005491 dme-miR-975 36791 Lis-1 uaugucCUACAU-CCUUCACAAAu |||||: ||||||| gacguuGAUGUGUUUUAGUGUUUg 2 18 530 553 [dm3:2R:12071711-12071734:+] 0.5060 148 7 -17.76 -0.6573 MIMAT0005494 dme-miR-978 36791 Lis-1 gacGUUAAAUGCCGUGACCUgu :|: | | ||||||| uaaUAGCUAAAUUCACUGGAaa 3 20 570 591 [dm3:2R:12071751-12071772:+] 0.5148 127 0 -12.11 -0.1271 MIMAT0005502 dme-miR-985 36791 Lis-1 acgGGCUGGUAACCUUGUAAAc |: | | || ||||||| auaCUCAAAAAUGCAACAUUUg 2 20 1215 1236 [dm3:2R:12072396-12072417:+] 0.4571 151 7 -11.82 -0.2311 MIMAT0005026 dme-miR-1013 36791 Lis-1 gcucaagccguAUGAAAAUa |||||||| aaaauauaauuUACUUUUAc 2 10 849 868 [dm3:2R:12072030-12072049:+] 0.5148 145 7 -5.38 -0.8528 MIMAT0011786 dme-miR-2280 36791 Lis-1 uauaaaauaacggUUCGAUUcu ||||||| uuaaacauaaauaAAGCUAAua 3 10 41 62 [dm3:2R:12071222-12071243:+] 0.5923 125 0 -5.34 -0.3440 MIMAT0011791 dme-miR-2283 36791 Lis-1 uaacaGCAUAAGUACUAUAAAAg :| | :|| :|||||| uaaaaUGAACAUAUUGUAUUUUa 2 19 156 178 [dm3:2R:12071337-12071359:+] 0.5167 134 6 -4.66 -0.1003 MIMAT0012197 dme-miR-2490 36791 Lis-1 aacguuggacgaaaUAGCGAAgu ||||||| ggcgauguauagaaAUCGCUUaa 3 10 1376 1398 [dm3:2R:12072557-12072579:+] 0.5238 125 0 -13.50 -0.1120 MIMAT0012199 dme-miR-2492 36791 Lis-1 aaacUUUCGAG-AGCUG-UUUUGUa ||:| || || || |||||| gcgaAAGGAUCUUCAACAAAAACAa 2 20 781 805 [dm3:2R:12071962-12071986:+] 0.5148 130 6 -12.26 -1.0292 MIMAT0012199 dme-miR-2492 36791 Lis-1 aaacuuucgagagcugUUUUGUa |||||| agaaaucuaauuauugAAAACAa 2 8 1067 1089 [dm3:2R:12072248-12072270:+] 0.4571 120 6 -7.84 -0.1890 MIMAT0012202 dme-miR-2494* 36791 Lis-1 aaggguUAGACCACGU-GAAUg ||:|| |||| |||| ugcaacAUUUGAUGCACCUUAu 2 16 1226 1247 [dm3:2R:12072407-12072428:+] 0.4571 127 0 -12.39 -0.7111 MIMAT0012208 dme-miR-2497* 36791 Lis-1 uuGUUGAUGUAAAACGUUACGAAUg ||| ||| ||| |||||||| aaCAAAUACCUUUCAAAAUGCUUAc 2 24 801 825 [dm3:2R:12071982-12072006:+] 0.5148 175 7 -17.62 -0.9167 MIMAT0012208 dme-miR-2497* 36791 Lis-1 uuGUUGAUGUAAAACGUUA-CGAAUg :::| |::| | | ||| ||||| acUGGCGAUGUAUAGAAAUCGCUUAa 2 24 1373 1398 [dm3:2R:12072554-12072579:+] 0.5238 127 0 -11.19 -1.1241 MIMAT0012208 dme-miR-2497* 36791 Lis-1 uuguugauguaaaacguuACGAAUg |||||| aagaaucggcaaggguucUGCUUAc 2 8 8 32 [dm3:2R:12071189-12071213:+] 0.6429 120 6 -13.45 -0.2550 MIMAT0000105 dme-miR-1 36791 Lis-1 gaGGUAUGA-AGAAA--UG-UAAGGu |||||:| |||| || ||||| aaCCAUAUUCACUUUACACAAUUCCu 2 21 738 763 [dm3:2R:12071919-12071944:+] 0.5148 130 0 -19.54 -0.7244 MIMAT0000332 dme-miR-274 36791 Lis-1 uaaugggcaaucacagccAGUGUUUu ||||||| aucuaagaaaacuuguacUCACAAAg 2 9 620 645 [dm3:2R:12071801-12071826:+] 0.5148 140 7 -13.03 -0.3482 MIMAT0000342 dme-miR-33 36791 Lis-1 guUACGCUG-AUGUUACGUGGa |||| || | ::||||||| aaAUGCAACAUUUGAUGCACCu 2 20 1223 1244 [dm3:2R:12072404-12072425:+] 0.4571 162 7 -19.72 -0.6902 MIMAT0000409 dme-miR-317 36791 Lis-1 ugaccUAUGGUGGUC--GACACAAGu | | : || | :||||||| uuuacACAAUUCCUGUUUUGUGUUCu 2 20 750 775 [dm3:2R:12071931-12071956:+] 0.5148 142 7 -14.91 -0.6473 MIMAT0000413 dme-miR-iab-4-3p 36791 Lis-1 caaugcauaugacuuccAUAUGGc |||||| agagcaacggcaaaaaaUAUACCu 2 8 919 942 [dm3:2R:12072100-12072123:+] 0.5895 120 6 -7.93 -0.2436 MIMAT0005470 dme-miR-957 36791 Lis-1 cgGAGUCAAAACCUGCCAAAgu :|:| |||| ||||||| aaUUUACUUUU--ACGGUUUac 3 21 856 875 [dm3:2R:12072037-12072056:+] 0.5148 141 0 -11.33 -0.1008 MIMAT0005490 dme-miR-974 36791 Lis-1 uuaugaugaagAAACGAGCGAa || ||||||| auaaaccagcaUUGGCUCGCUa 2 12 332 353 [dm3:2R:12071513-12071534:+] 0.5038 147 7 -12.42 -0.4753 MIMAT0005492 dme-miR-976 36791 Lis-1 cguAACUA--CUAUUGAUUA-GGUu || || || ::||||| ||| uauUUCAUUCGACGGCUAAUACCAu 2 20 427 451 [dm3:2R:12071608-12071632:+] 0.4492 122 0 -11.71 -0.1518 MIMAT0005504 dme-miR-987 36791 Lis-1 guAGUUAGGUCUGA---UAAAUGAAAu | |:|:|| | | ||||||||| uuUAAGUUCAAAAUAUAAUUUACUUUu 2 23 840 866 [dm3:2R:12072021-12072047:+] 0.5148 161 7 -10.37 -0.9936 MIMAT0005504 dme-miR-987 36791 Lis-1 guaguuaggucuGAUAAAUGAAau ||: |||||| ucggcaaggguuCUGCUUACUUcu 3 13 13 36 [dm3:2R:12071194-12071217:+] 0.6429 128 0 -10.15 -0.1414 MIMAT0005027 dme-miR-1014 36791 Lis-1 gaCGUUUACUUUUACUUAAAa ||| || ||||||| ggGCAUCCUAACUUGAAUUUg 2 20 361 381 [dm3:2R:12071542-12071562:+] 0.5038 147 7 -7.43 -0.3273

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Lis-1 RAID00062264 dme-miR-954-5p miRNA MIMAT0005465 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID00503374 dme-miR-317-3p miRNA MIMAT0000409 Lis-1 mRNA 36791 Prediction 0.2381 Lis-1 RAID00571885 dme-miR-1000-5p miRNA MIMAT0005520 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID00935992 dme-miR-274-5p miRNA MIMAT0000332 Lis-1 mRNA 36791 Prediction 0.2202 Lis-1 RAID01071352 dme-miR-1014-3p miRNA MIMAT0005027 Lis-1 mRNA 36791 Prediction 0.2202 Lis-1 RAID01175862 dme-miR-282-5p miRNA MIMAT0000346 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID01393263 dme-miR-4-3p miRNA MIMAT0000109 Lis-1 mRNA 36791 Prediction 0.2202 Lis-1 RAID01615476 dme-miR-277-3p miRNA MIMAT0000338 Lis-1 mRNA 36791 Prediction 0.2381 Lis-1 RAID01635184 dme-miR-975-5p miRNA MIMAT0005491 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID01708338 dme-miR-960-5p miRNA MIMAT0005474 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID02061767 dme-miR-985-3p miRNA MIMAT0005502 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID02063955 dme-miR-1-3p miRNA MIMAT0000105 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID02340100 dme-miR-979-3p miRNA MIMAT0005495 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID02561856 dme-miR-987-5p miRNA MIMAT0005504 Lis-1 mRNA 36791 Prediction 0.2381 Lis-1 RAID02880109 dme-miR-966-5p miRNA MIMAT0005481 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID02916023 dme-miR-1013-3p miRNA MIMAT0005026 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID03048599 dme-miR-1005-3p miRNA MIMAT0005018 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID03246265 dme-miR-957-3p miRNA MIMAT0005470 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID03486880 dme-miR-974-5p miRNA MIMAT0005490 Lis-1 mRNA 36791 Prediction 0.2202 Lis-1 RAID03661275 dme-miR-33-5p miRNA MIMAT0000342 Lis-1 mRNA 36791 Prediction 0.2202 Lis-1 RAID03724308 dme-miR-972-3p miRNA MIMAT0005488 Lis-1 mRNA 36791 Prediction 0.1828 Lis-1 RAID03758000 dme-miR-976-3p miRNA MIMAT0005492 Lis-1 mRNA 36791 Prediction 0.2202 Lis-1 RAID03846855 dme-miR-iab-4-3p miRNA MIMAT0000413 Lis-1 mRNA 36791 Prediction 0.1828