DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 35306 rtGEF auaGUAAAGUAUACGUUGCAUU-UAUGu ||||| || || :|: ||| |||| gaaCAUUU-AU-UG-GAU-UAAUAUACa 2 25 727 750 [dm3:2L:20365217-20365240:+] 0.4911 120 0 -8.54 -0.7086 MIMAT0000343 dme-miR-280 35306 rtGEF auaGUAAAGUAUACGUUGCAUU-UAUGu ||||| || || :|: ||| |||| gaaCAUUU-AU-UG-GAU-UAAUAUACa 2 25 727 750 [dm3:2L:20365217-20365240:+] 0.4911 120 0 -8.54 -0.7085 MIMAT0000363 dme-miR-288 35306 rtGEF guacUUUACUUUAGCUGUA-CUUu |||| || | |||| ||| gggcAAAUUUAA-CAACAUCGAAc 2 20 370 392 [dm3:2L:20364860-20364882:+] 0.4911 121 0 -4.45 -0.8907 MIMAT0000363 dme-miR-288 35306 rtGEF guacUUUACUUUAGCUGUA-CUUu |||| || | |||| ||| gggcAAAUUUAA-CAACAUCGAAc 2 20 370 392 [dm3:2L:20364860-20364882:+] 0.4911 121 0 -4.45 -0.8898 MIMAT0005502 dme-miR-985 35306 rtGEF acgGGCUGGUA---ACCUUGUAAAc ||||::|| | |||||||| uuaCCGAUUAUACCUAGAACAUUUa 2 20 711 735 [dm3:2L:20365201-20365225:+] 0.4911 162 7 -17.74 -0.9517 MIMAT0005502 dme-miR-985 35306 rtGEF acgGGCUGGUA---ACCUUGUAAAc ||||::|| | |||||||| uuaCCGAUUAUACCUAGAACAUUUa 2 20 711 735 [dm3:2L:20365201-20365225:+] 0.4911 162 7 -17.74 -0.9547 MIMAT0005521 dme-miR-1001 35306 rtGEF acuaGGA-ACCCUCAAAUGGGu |:| | | | ||||||: uagaCUUAUUGUAUUUUACCUa 2 18 507 528 [dm3:2L:20364997-20365018:+] 0.4911 132 0 -9.93 -0.1539 MIMAT0005521 dme-miR-1001 35306 rtGEF acuaggaacccucAAAUGGgu |||||| ucaaaaaguuguaUUUACCga 3 9 697 717 [dm3:2L:20365187-20365207:+] 0.4911 120 0 -8.90 -0.1291 MIMAT0005521 dme-miR-1001 35306 rtGEF acuaGGA-ACCCUCAAAUGGGu |:| | | | ||||||: uagaCUUAUUGUAUUUUACCUa 2 18 507 528 [dm3:2L:20364997-20365018:+] 0.4911 132 0 -9.93 -0.1535 MIMAT0005521 dme-miR-1001 35306 rtGEF acuaggaacccucAAAUGGgu |||||| ucaaaaaguuguaUUUACCga 3 9 697 717 [dm3:2L:20365187-20365207:+] 0.4911 120 0 -8.90 -0.1251 MIMAT0005022 dme-miR-1009 35306 rtGEF gacuuuacauUGUUAAAAACUCu :||| ||||||| uugccaccauGCAACUUUUGAGa 2 14 539 561 [dm3:2L:20365029-20365051:+] 0.4911 153 7 -11.94 -0.3884 MIMAT0005022 dme-miR-1009 35306 rtGEF gacuuuacauUGUUAAAAACUCu :||| ||||||| uugccaccauGCAACUUUUGAGa 2 14 539 561 [dm3:2L:20365029-20365051:+] 0.4911 153 7 -11.94 -0.3876 MIMAT0005026 dme-miR-1013 35306 rtGEF gcucaagccgUAUGAAAAUa | ||||||| ucauucuuagACACUUUUAc 2 11 87 106 [dm3:2L:20364577-20364596:+] 0.6008 142 7 -4.64 -0.5935 MIMAT0005026 dme-miR-1013 35306 rtGEF gcucaagccgUAUGAAAAUa | ||||||| ucauucuuagACACUUUUAc 2 11 87 106 [dm3:2L:20364577-20364596:+] 0.6008 142 7 -4.64 -0.5926 MIMAT0011791 dme-miR-2283 35306 rtGEF uaacagcauaaGUAC-UAUAAAAg |||| ||||||| gccuagcacaaCAUGCAUAUUUUa 2 13 461 484 [dm3:2L:20364951-20364974:+] 0.4911 151 7 -9.05 -0.4456 MIMAT0011791 dme-miR-2283 35306 rtGEF uaacagcauaaGUAC-UAUAAAAg |||| ||||||| gccuagcacaaCAUGCAUAUUUUa 2 13 461 484 [dm3:2L:20364951-20364974:+] 0.4911 151 7 -9.05 -0.4447 MIMAT0012206 dme-miR-2496* 35306 rtGEF augcuACCGGAGAGUGUGUGCGUg ||| :| :|:||||||| uuuauUGGAUUAAUAUACACGCAc 2 20 732 755 [dm3:2L:20365222-20365245:+] 0.4911 159 7 -22.80 -1.0724 MIMAT0012206 dme-miR-2496* 35306 rtGEF augcuACCGGAGAGUGUGUGCGUg ||| :| :|:||||||| uuuauUGGAUUAAUAUACACGCAc 2 20 732 755 [dm3:2L:20365222-20365245:+] 0.4911 159 7 -22.80 -1.1540 MIMAT0012212 dme-miR-2499* 35306 rtGEF cgUAACGCGACUGCAGAUGCGUGc |||| :| |: | |||||| uuAUUGGAUUAAUAUACACGCACa 2 23 733 756 [dm3:2L:20365223-20365246:+] 0.4911 130 6 -12.02 -0.3622 MIMAT0012212 dme-miR-2499* 35306 rtGEF cgUAACGCGACUGCAGAUGCGUGc |||| :| |: | |||||| uuAUUGGAUUAAUAUACACGCACa 2 23 733 756 [dm3:2L:20365223-20365246:+] 0.4911 130 6 -12.02 -0.3022 MIMAT0000109 dme-miR-4 35306 rtGEF aguuaccaacAGAUCGAAAUa |:|||||||| cgccgcugcuUUUAGCUUUAa 2 12 65 85 [dm3:2L:20364555-20364575:+] 0.6008 151 7 -10.06 -1.1806 MIMAT0000109 dme-miR-4 35306 rtGEF aguuaccaacAGAUCGAAAUa |:|||||||| cgccgcugcuUUUAGCUUUAa 2 12 65 85 [dm3:2L:20364555-20364575:+] 0.6008 151 7 -10.06 -1.1802 MIMAT0000346 dme-miR-282 35306 rtGEF ugUC-UGUU-U-CGGAU--CAUCUCCG-AUCUAa || |||| | || || || ||| ||||| cuAGCACAACAUGCAUAUUUUACUGGCAUAGAUu 2 27 463 496 [dm3:2L:20364953-20364986:+] 0.4911 122 0 -14.70 -0.5349 MIMAT0000346 dme-miR-282 35306 rtGEF ugUC-UGUU-U-CGGAU--CAUCUCCG-AUCUAa || |||| | || || || ||| ||||| cuAGCACAACAUGCAUAUUUUACUGGCAUAGAUu 2 27 463 496 [dm3:2L:20364953-20364986:+] 0.4911 122 0 -14.70 -0.5339 MIMAT0000352 dme-miR-79 35306 rtGEF uacgaaaccauuAGAUCGAAAu |:||||||| cccgccgcugcuUUUAGCUUUa 2 11 63 84 [dm3:2L:20364553-20364574:+] 0.6008 146 7 -12.14 -1.1548 MIMAT0000352 dme-miR-79 35306 rtGEF uacgaaaccauuAGAUCGAAAu |:||||||| cccgccgcugcuUUUAGCUUUa 2 11 63 84 [dm3:2L:20364553-20364574:+] 0.6008 146 7 -12.14 -1.1543 MIMAT0000355 dme-miR-210 35306 rtGEF aucggcgacaGUGUGCGUGUu :||||||||| uggauuaauaUACACGCACAg 2 12 737 757 [dm3:2L:20365227-20365247:+] 0.4911 151 7 -18.80 -0.9800 MIMAT0000355 dme-miR-210 35306 rtGEF aucggcgacaGUGUGCGUGUu :||||||||| uggauuaauaUACACGCACAg 2 12 737 757 [dm3:2L:20365227-20365247:+] 0.4911 151 7 -18.80 -0.9335 MIMAT0000362 dme-miR-263b 35306 rtGEF cacUUAAGAGGGU---CACGGUUc |||| |: | ||||||| caaAAUUAUUAAAAAUGUGCCAAu 2 19 638 661 [dm3:2L:20365128-20365151:+] 0.4911 145 7 -9.44 -1.1536 MIMAT0000362 dme-miR-263b 35306 rtGEF cacUUAAGAGGGU---CACGGUUc |||| |: | ||||||| caaAAUUAUUAAAAAUGUGCCAAu 2 19 638 661 [dm3:2L:20365128-20365151:+] 0.4911 145 7 -9.44 -1.1530 MIMAT0000407 dme-miR-315 35306 rtGEF cgAAAGACUCGUUGUUA-GUUUu |||| | :||||| |||| gaUUUCAAAUGGACAAUGCAAAa 2 21 620 642 [dm3:2L:20365110-20365132:+] 0.4911 128 0 -9.15 -1.1490 MIMAT0000407 dme-miR-315 35306 rtGEF cgAAAGACUCGUUGUUA-GUUUu |||| | :||||| |||| gaUUUCAAAUGGACAAUGCAAAa 2 21 620 642 [dm3:2L:20365110-20365132:+] 0.4911 128 0 -9.15 -1.1484 MIMAT0000413 dme-miR-iab-4-3p 35306 rtGEF caauGCAUAUGACUUCCAU--AUGGc ||||||: || ||| |||| uaauCGUAUAUGGAUUGUAUUUACCg 2 21 166 191 [dm3:2L:20364656-20364681:+] 0.5012 120 0 -20.48 -0.6381 MIMAT0000413 dme-miR-iab-4-3p 35306 rtGEF caauGCAUAUGACUUCCAU--AUGGc ||||||: || ||| |||| uaauCGUAUAUGGAUUGUAUUUACCg 2 21 166 191 [dm3:2L:20364656-20364681:+] 0.5012 120 0 -20.48 -0.6372 MIMAT0005504 dme-miR-987 35306 rtGEF guAGUUAG-GUCUG-AUAAAUGAAAu ||| || :|||| |||||||| auUCAUUCUUAGACACUUUUACUUUg 2 23 85 110 [dm3:2L:20364575-20364600:+] 0.6008 164 7 -16.16 -0.6704 MIMAT0005504 dme-miR-987 35306 rtGEF guAGUUAG-GUCUG-AUAAAUGAAAu ||| || :|||| |||||||| auUCAUUCUUAGACACUUUUACUUUg 2 23 85 110 [dm3:2L:20364575-20364600:+] 0.6008 164 7 -16.16 -0.6695 MIMAT0005520 dme-miR-1000 35306 rtGEF ugacGACACUGUCCUGUUAUa :||||| |||||||| auacUUGUGAACGGACAAUAu 2 18 212 232 [dm3:2L:20364702-20364722:+] 0.5012 165 7 -19.57 -0.2072 MIMAT0005520 dme-miR-1000 35306 rtGEF ugacGACACUGUCCUGUUAUa :||||| |||||||| auacUUGUGAACGGACAAUAu 2 18 212 232 [dm3:2L:20364702-20364722:+] 0.5012 165 7 -19.57 -0.2068 MIMAT0005030 dme-miR-1017 35306 rtGEF ccuacucaaacccaucUCGAAAg |||||| acccgccgcugcuuuuAGCUUUa 2 8 62 84 [dm3:2L:20364552-20364574:+] 0.6008 120 6 -4.91 -0.1225 MIMAT0005030 dme-miR-1017 35306 rtGEF ccuacucaaacccaucUCGAAAg |||||| acccgccgcugcuuuuAGCUUUa 2 8 62 84 [dm3:2L:20364552-20364574:+] 0.6008 120 6 -4.91 -0.1222

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score RtGEF RAID00142713 dme-mir-iab-4 miRNA MI0000432 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID00329434 dme-miR-282-5p miRNA MIMAT0000346 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID00540476 dme-miR-8-3p miRNA MIMAT0000113 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID00555371 dme-miR-4-3p miRNA MIMAT0000109 RtGEF mRNA 35306 Prediction 0.2381 RtGEF RAID00624824 dme-miR-284-3p miRNA MIMAT0000348 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID01065977 dme-miR-304-5p miRNA MIMAT0000390 RtGEF mRNA 35306 Prediction 0.2202 RtGEF RAID01223119 dme-miR-985-3p miRNA MIMAT0005502 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID01310195 dme-miR-79-3p miRNA MIMAT0000352 RtGEF mRNA 35306 Prediction 0.2381 RtGEF RAID01333544 dme-miR-34-5p miRNA MIMAT0000350 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID01717175 dme-miR-987-5p miRNA MIMAT0005504 RtGEF mRNA 35306 Prediction 0.2381 RtGEF RAID01959466 dme-miR-929-3p miRNA MIMAT0005511 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID02042271 dme-miR-966-5p miRNA MIMAT0005481 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID02068560 dme-miR-1017-3p miRNA MIMAT0005030 RtGEF mRNA 35306 Prediction 0.2381 RtGEF RAID02078433 dme-miR-1013-3p miRNA MIMAT0005026 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID02139851 dme-miR-14-3p miRNA MIMAT0000120 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID02249169 dme-miR-1009-3p miRNA MIMAT0005022 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID02314860 dme-miR-210-3p miRNA MIMAT0000355 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID02673161 dme-miR-263b-5p miRNA MIMAT0000362 RtGEF mRNA 35306 Prediction 0.2381 RtGEF RAID02688549 dme-bantam-3p miRNA MIMAT0000365 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID02738544 dme-miR-124-3p miRNA MIMAT0000351 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID02866870 dme-miR-33-5p miRNA MIMAT0000342 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID03034792 dme-miR-iab-4-3p miRNA MIMAT0000413 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID03452362 dme-miR-315-5p miRNA MIMAT0000407 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID03578482 dme-miR-986-5p miRNA MIMAT0005503 RtGEF mRNA 35306 Prediction 0.1828 RtGEF RAID03822888 dme-miR-1000-5p miRNA MIMAT0005520 RtGEF mRNA 35306 Prediction 0.2381