DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT438519 dme-miR-998-3p Drosophila melanogaster Cbl 38961 Drosophila melanogaster Microarray//qRT-PCR Functional MTI (Weak) 25058496

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 38961 Cbl ugGUCAUGGACUACAUUAUGAGu :||| : | :| |||||||: uuUAGUUUAUUGUUUAAUACUUc 2 22 739 761 [dm3:3L:8421248-8421270:+] 0.6761 145 0 -12.74 -0.1955 MIMAT0000344 dme-miR-281-1* 38961 Cbl ugacagcugccuguCGAGAGaa |||||| auucaaauuuucuuGCUCUCac 3 9 845 866 [dm3:3L:8424281-8424302:+] 0.5019 120 0 -11.25 -0.3127 MIMAT0000344 dme-miR-281-1* 38961 Cbl ugacAGCUGCCUGU-CGAGAGAa || || || ||||||| uucuUCCACUCUCACGCUCUCUc 2 19 467 489 [dm3:3L:8420976-8420998:+] 0.4943 149 7 -14.45 -0.3387 MIMAT0000364 dme-miR-289 38961 Cbl ucAGCGU--CCGAGGUG-AAUUUAUAAAu ||||| |:||: ||||||||| auUCGCAUUAUAUUCAUGGUAAAUAUUUu 2 25 468 496 [dm3:3L:8423904-8423932:+] 0.4915 158 7 -16.86 -0.6982 MIMAT0000364 dme-miR-289 38961 Cbl ucAGCGUCCGAGGUGA-AUU-UAUAAAu |:|: |:|: :|| ||| |||||| uuUUGUUUGUUUAGCUGUAACAUAUUUa 2 25 211 238 [dm3:3L:8420720-8420747:+] 0.5297 131 6 -10.83 -1.1882 MIMAT0000364 dme-miR-289 38961 Cbl ucagcguccgAGGUG-AAUUUAUAAAu | :|| ||| |||||| uaugccuauaUAUACAUUAUAUAUUUu 2 17 110 136 [dm3:3L:8420619-8420645:+] 0.6107 127 6 -8.13 -0.1558 MIMAT0005488 dme-miR-972 38961 Cbl cggauuuAUAAGCAUAACAUGu || || ||||||| auucucuUAAUC--AUUGUACu 2 16 699 718 [dm3:3L:8421208-8421227:+] 0.5244 144 7 -7.71 -0.6007 MIMAT0005491 dme-miR-975 38961 Cbl uauguccuacauccuuCACAAAu |||||| cauuguacuccguuauGUGUUUa 2 8 710 732 [dm3:3L:8421219-8421241:+] 0.6002 120 6 -7.97 -0.3096 MIMAT0005502 dme-miR-985 38961 Cbl acGGGCUGGUAACCUUGUAAAc |:| | | | ||||||| uuCUCUAGC--UCAAACAUUUg 2 21 92 111 [dm3:3L:8423528-8423547:+] 0.5032 141 7 -11.10 -0.5551 MIMAT0005502 dme-miR-985 38961 Cbl acgggcugguaaccuUGUAAAc |||||| aauacuuccaaagauACAUUUa 2 8 754 775 [dm3:3L:8421263-8421284:+] 0.6761 120 6 -7.52 -0.1714 MIMAT0005508 dme-miR-990 38961 Cbl ccgGUUGAGUCUU-GCCACUUa || :|:| || ||||||| uagCAUUUUAUAAUCGGUGAAa 2 19 160 181 [dm3:3L:8423596-8423617:+] 0.4838 157 7 -14.29 -1.2493 MIMAT0005509 dme-miR-991 38961 Cbl ugaaaggUUUGAUGUUGAA-AUu |||:||:||||| || auauaagAAAUUAUAACUUGUAu 2 16 766 788 [dm3:3L:8424202-8424224:+] 0.5667 131 0 -9.99 -1.0673 MIMAT0010206 dme-miR-995* 38961 Cbl gcgUCGAGGGUGUAUUAAGCcc ||:|:|: :| |||||| guaAGUUUCU-UA-AAUUCGug 3 20 200 219 [dm3:3L:8423636-8423655:+] 0.4838 131 0 -14.17 -0.1276 MIMAT0010206 dme-miR-995* 38961 Cbl gcgucgaggGUGUAUUAAGCcc || | |||||| aggaaaauaCAAAAAAUUCGca 3 14 453 474 [dm3:3L:8423889-8423910:+] 0.4673 129 0 -11.19 -0.1658 MIMAT0005517 dme-miR-997 38961 Cbl acUUUGAGGAAGCUCAAACcc ||: | | |: |||||| caAAGAUACAUUUAGUUUGua 3 20 762 782 [dm3:3L:8421271-8421291:+] 0.6761 135 0 -8.51 -0.1117 MIMAT0005018 dme-miR-1005 38961 Cbl gaCGCUUAAUUUCUAA-GGUCu | || | ||| ||| |||| auGAGAUUAAAAUAUUGCCAGu 2 20 643 664 [dm3:3L:8424079-8424100:+] 0.4926 127 0 -10.67 -0.8698 MIMAT0005021 dme-miR-1008 38961 Cbl acauuuguguuuuUCGACAcu |||||| auuuuguuuguuuAGCUGUaa 3 9 210 230 [dm3:3L:8420719-8420739:+] 0.5297 120 0 -6.53 -0.1371 MIMAT0005025 dme-miR-1012 38961 Cbl gauaccCCUUUUAGAAACUGAUu | |||:|: |||||| ccguucGAAAAGUUAAUGACUAa 2 18 619 641 [dm3:3L:8424055-8424077:+] 0.4926 129 6 -10.25 -0.1255 MIMAT0005026 dme-miR-1013 38961 Cbl gcucaagccguAUGAAAAua ||||||| uaaucuaaaauUACUUUUua 3 10 221 240 [dm3:3L:8423657-8423676:+] 0.4778 125 0 -4.61 -0.2638 MIMAT0005028 dme-miR-1015 38961 Cbl gacguuCUCUCUAC---AGGGUCCu |:| ||| ||||||| uaggcuGGGCUAUGCGAUCCCAGGa 2 17 537 561 [dm3:3L:8423973-8423997:+] 0.4173 143 7 -21.56 -0.2519 MIMAT0011784 dme-miR-2279* 38961 Cbl uuAAAGUG-UGUGUCUAUAAAUu ||| :| ::| | ||||||| ugUUUAGCUGUA-ACAUAUUUAa 2 21 218 239 [dm3:3L:8420727-8420748:+] 0.5297 149 7 -5.07 -0.8858 MIMAT0011784 dme-miR-2279* 38961 Cbl uuaAAGUGUGU-GUCUAUAAAuu | :|:||| :| |||||| cuaUAUAUACAUUAUAUAUUUua 3 20 115 137 [dm3:3L:8420624-8420646:+] 0.6107 138 0 -8.81 -0.2323 MIMAT0011787 dme-miR-2280* 38961 Cbl agucAAUCGAACCUUCAUUUAa ||| || :|||||| cgcaUUAUAUUCAUGGUAAAUa 2 19 471 492 [dm3:3L:8423907-8423928:+] 0.4915 134 6 -4.01 -0.1671 MIMAT0011791 dme-miR-2283 38961 Cbl uaacAGCAUAAGUAC----UAUAAAAg |: |||||||| ||||||| cgcaUUAUAUUCAUGGUAAAUAUUUUc 2 20 471 497 [dm3:3L:8423907-8423933:+] 0.5187 162 7 -14.46 -0.7582 MIMAT0011791 dme-miR-2283 38961 Cbl uaACAGCAUAAGUACUAUAAAAg |||: ||| || ||||||| ucUGUU-UAUGAAUCAUAUUUUa 2 22 511 532 [dm3:3L:8421020-8421041:+] 0.4786 163 7 -9.18 -0.6579 MIMAT0011791 dme-miR-2283 38961 Cbl uaacagcAUAAGUA--CUAUAAAAg ||| ||| ||||||| gccuauaUAUACAUUAUAUAUUUUa 2 17 113 137 [dm3:3L:8420622-8420646:+] 0.6107 151 7 -4.34 -1.2849 MIMAT0012197 dme-miR-2490 38961 Cbl aacGUUGG-ACGAA---AUAGCGAAGu ||||| | || ||||||||| cauCAACCAUCGUUGGCUAUCGCUUCc 2 21 380 406 [dm3:3L:8420889-8420915:+] 0.5297 158 7 -20.85 -0.3174 MIMAT0012199 dme-miR-2492 38961 Cbl aaacuuuCGAGAGCUGUUUUGUa |||||| |||||| | uuuucuuGCUCUC-ACAAAAAAa 2 17 852 873 [dm3:3L:8424288-8424309:+] 0.5019 134 0 -14.45 -0.1294 MIMAT0012199 dme-miR-2492 38961 Cbl aaacuuucgagagcugUUUUGUa |||||| cgaacaaaaaaagaaaAAAACAa 2 8 45 67 [dm3:3L:8423481-8423503:+] 0.4974 120 6 -4.40 -0.2025 MIMAT0012199 dme-miR-2492 38961 Cbl aaacuuucgagagcugUUUUGUa |||||| agaaaaaaacaaaaugAAAACAa 2 8 56 78 [dm3:3L:8423492-8423514:+] 0.4974 120 6 -3.09 -0.1409 MIMAT0012201 dme-miR-2493 38961 Cbl ugcGGAGCGUGUUU--AUGUGUGCc || | || || ||||||| cauCCACAGACCAACGCACACACGc 2 21 266 290 [dm3:3L:8420775-8420799:+] 0.5297 147 7 -17.91 -0.1475 MIMAT0012202 dme-miR-2494* 38961 Cbl aaggguuagaccacGUGAAUg |||||| aauauagcuauguaCACUUAa 2 8 704 724 [dm3:3L:8424140-8424160:+] 0.5667 120 6 -9.78 -0.2233 MIMAT0012215 dme-miR-2500 38961 Cbl gacuccaggUGUGUGUUUUAgg | | ||||||| aaaaaagaaAAAAACAAAAUga 3 14 51 72 [dm3:3L:8423487-8423508:+] 0.4974 129 0 -3.70 -0.1646 MIMAT0012215 dme-miR-2500 38961 Cbl gacuccaggugugugUUUUAGg |||||| uuauuaacaaaaaaaAAAAUCg 2 8 863 884 [dm3:3L:8421372-8421393:+] 0.5161 120 6 -4.54 -0.2448 MIMAT0000109 dme-miR-4 38961 Cbl agUUA-CCAACAGAUC-GAAAUa ||| || || ||| ||||| uaAAUCGGAUG-AUAGUCUUUAa 2 20 22 43 [dm3:3L:8423458-8423479:+] 0.4862 120 0 -7.74 -0.4665 MIMAT0000112 dme-miR-7 38961 Cbl ugUUGUUUUAGU-GAU--CAGAAGGu | :||:| :| ||| |||||| aaAUUAAGACUAUCUAACUUCUUCCu 2 22 723 748 [dm3:3L:8424159-8424184:+] 0.5667 123 6 -10.50 -0.1256 MIMAT0000113 dme-miR-8 38961 Cbl cuGUAGAAAUGGACUGUCAUAAu :|| | |:|| :||||||| auUAUGUAUGCC--GCAGUAUUu 2 22 653 673 [dm3:3L:8421162-8421182:+] 0.4786 154 7 -12.87 -0.3387 MIMAT0000114 dme-miR-9a 38961 Cbl aguAUGUCGAUCUAU--UGGUUUCu ||: |:| ||| |||||| guuUAUUGUUUAAUACUUCCAAAGa 2 21 743 767 [dm3:3L:8421252-8421276:+] 0.6761 123 6 -11.66 -0.4465 MIMAT0000120 dme-miR-14 38961 Cbl auccucucucuuuUUCUGACu ||||||| aacgcgcugcccuAAGACUGu 2 9 836 856 [dm3:3L:8421345-8421365:+] 0.5007 140 7 -9.45 -0.6012 MIMAT0000332 dme-miR-274 38961 Cbl uaaugggcAAUCACAGCCAGUGUUUu || || | ||||||| uucaaauuUUCUUG-CUCUCACAAAa 2 19 846 870 [dm3:3L:8424282-8424306:+] 0.5019 144 7 -11.75 -1.0697 MIMAT0000347 dme-miR-283 38961 Cbl ucuuaauggucgacUAUAAAu |||||| uauauauacauuauAUAUUUu 2 8 116 136 [dm3:3L:8420625-8420645:+] 0.6107 120 6 -4.20 -0.1558 MIMAT0000347 dme-miR-283 38961 Cbl ucuuaauggucgacUAUAAAu |||||| uguuuagcuguaacAUAUUUa 2 8 218 238 [dm3:3L:8420727-8420747:+] 0.5297 120 6 -11.00 -0.1698 MIMAT0000349 dme-miR-281-2* 38961 Cbl ugacagcugccuAUCGAGAGaa | |||||| auucaaauuuucUUGCUCUCac 3 11 845 866 [dm3:3L:8424281-8424302:+] 0.5019 122 0 -7.90 -0.3127 MIMAT0000349 dme-miR-281-2* 38961 Cbl ugacAGCUGCCUAU-CGAGAGAa || || | ||||||| uucuUCCACUCUCACGCUCUCUc 2 19 467 489 [dm3:3L:8420976-8420998:+] 0.4943 141 7 -13.03 -0.3387 MIMAT0000355 dme-miR-210 38961 Cbl aucGGCGACAGUGUGCGUGUu || | | | ||||||| cauCCACAGACCAACGCACAc 2 19 266 286 [dm3:3L:8420775-8420795:+] 0.5297 150 7 -12.98 -0.3531 MIMAT0000361 dme-miR-87 38961 Cbl gugugGACUUUAA---AACGAGuu :| ||||| |||||| auauaUUCAAAUUUUCUUGCUCuc 3 17 841 864 [dm3:3L:8424277-8424300:+] 0.5019 131 0 -9.56 -0.1279 MIMAT0000390 dme-miR-304 38961 Cbl gaguGUAAAUG-UUUAACUCUAAu :| | || ||| ||||||| aaguUAAUGACUAAAAUGAGAUUa 2 20 628 651 [dm3:3L:8424064-8424087:+] 0.4926 158 7 -10.52 -1.2224 MIMAT0000391 dme-miR-305 38961 Cbl gucUCGUGGACUACUUCAUGUUa | ||| | |||||||| ccaAUCACAAGCACAAGUACAAc 2 21 291 313 [dm3:3L:8420800-8420822:+] 0.5297 152 7 -13.76 -0.4626 MIMAT0000392 dme-miR-9c 38961 Cbl agAUGUCGA--UCUUAUGGUUUCu ||: |:| | | | |||||| uuUAUUGUUUAAUACUUCCAAAGa 2 21 744 767 [dm3:3L:8421253-8421276:+] 0.6761 123 6 -11.27 -0.4465 MIMAT0000395 dme-miR-9b 38961 Cbl guAUGUC-GAUUUUAGUGGUUUCu ||: | :||| | : |||||| uuUAUUGUUUAAUACUUCCAAAGa 2 22 744 767 [dm3:3L:8421253-8421276:+] 0.6761 128 6 -10.54 -0.4400 MIMAT0000406 dme-miR-314 38961 Cbl ggcUUGAAU-AACC-GAGCUUAu ||| || || ||||||| cuaAACAUAGGAGGCCUCGAAUc 2 19 905 927 [dm3:3L:8421414-8421436:+] 0.5161 148 7 -12.87 -0.1822 MIMAT0000408 dme-miR-316 38961 Cbl gcggucaUUCGCCUUUUUCUgu :| | ||||||| uuuaaccGAACAAAAAAAGAaa 3 16 39 60 [dm3:3L:8423475-8423496:+] 0.4974 127 0 -8.83 -0.1873 MIMAT0000409 dme-miR-317 38961 Cbl ugACCUAUGGUGGUCGACACAAGu || | ||:::| ||||||: auUGUACUCCGUUA--UGUGUUUa 2 23 711 732 [dm3:3L:8421220-8421241:+] 0.6002 135 0 -16.92 -0.2510 MIMAT0005467 dme-miR-190 38961 Cbl guugguucuuAUAGUUUGUAUAGa ||| | ||||||: ugcugcuauuUAU-AUACAUAUUa 2 15 50 72 [dm3:3L:8420559-8420581:+] 0.5571 132 0 -6.82 -0.1015 MIMAT0005468 dme-miR-193 38961 Cbl caACCCUGA-AUCAU-CCGGUCAu || ||:| | || |||||| aaUGAGAUUAAAAUAUUGCCAGUa 2 21 642 665 [dm3:3L:8424078-8424101:+] 0.4926 122 6 -13.21 -0.1059 MIMAT0005472 dme-miR-375 38961 Cbl auugaauucGGUUUGCUUGUUu ::|| ||||||| ugauagucuUUAACCGAACAAa 2 14 31 52 [dm3:3L:8423467-8423488:+] 0.4862 149 7 -13.44 -1.0588 MIMAT0005474 dme-miR-960 38961 Cbl cgaUACGUUAGACCUUAUGAGu :| :| | | ||||||: uuaGUUUAUUGUUUAAUACUUc 2 20 740 761 [dm3:3L:8421249-8421270:+] 0.6761 131 0 -5.76 -0.1955 MIMAT0005483 dme-miR-1002 38961 Cbl agcgGGAAACAUAGGU---GAUGA-AUu ::||||||||:| ||||| || aguaUUUUUGUAUCUAUCCCUACUCUAg 2 21 667 694 [dm3:3L:8421176-8421203:+] 0.5015 135 0 -18.08 -0.6644 MIMAT0005486 dme-miR-970 38961 Cbl uaucggcgcacacAGAAUACu ||||||| auauacauauuacUCUUAUGa 2 9 61 81 [dm3:3L:8420570-8420590:+] 0.5553 140 7 -8.30 -1.0077 MIMAT0005504 dme-miR-987 38961 Cbl guAGUUAGGUCUGAUAAAUGAAAu |:||||:| | | ||||||| ugUUAAUCUA-A--AAUUACUUUu 2 23 218 238 [dm3:3L:8423654-8423674:+] 0.4778 157 7 -10.83 -1.1991 MIMAT0005507 dme-miR-137 38961 Cbl gaugcacauaaGAGUUCGUUAu | |||||||| ggcguagccagCACAAGCAAUu 2 12 588 609 [dm3:3L:8424024-8424045:+] 0.7087 147 7 -14.08 -0.3898 MIMAT0005023 dme-miR-1010 38961 Cbl gacguuUACCUUGCUAUCCACUUu || |: || |||||| auuagcAUUUUAUAAUCGGUGAAa 2 19 158 181 [dm3:3L:8423594-8423617:+] 0.4838 122 6 -10.96 -0.2271 MIMAT0005027 dme-miR-1014 38961 Cbl gacguuuacuuuuACUUAAAa ||||||| cuguauuauucguUGAAUUUu 2 9 602 622 [dm3:3L:8421111-8421131:+] 0.4786 140 7 -10.02 -0.6993

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cbl RAID00114479 dme-miR-1002-5p miRNA MIMAT0005483 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID00334012 dme-miR-4-3p miRNA MIMAT0000109 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID00347398 dme-miR-274-5p miRNA MIMAT0000332 Cbl mRNA 38961 Prediction 0.2381 Cbl RAID00401268 dme-miR-87-3p miRNA MIMAT0000361 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID00446600 dme-miR-9c-5p miRNA MIMAT0000392 Cbl mRNA 38961 Prediction 0.2202 Cbl RAID00512336 dme-miR-1006-3p miRNA MIMAT0005019 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID00525594 dme-miR-1014-3p miRNA MIMAT0005027 Cbl mRNA 38961 Prediction 0.2202 Cbl RAID00628612 dme-miR-375-3p miRNA MIMAT0005472 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID00745667 dme-miR-193-3p miRNA MIMAT0005468 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID00747027 dme-miR-317-3p miRNA MIMAT0000409 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID00791306 dme-miR-970-3p miRNA MIMAT0005486 Cbl mRNA 38961 Prediction 0.2202 Cbl RAID00824914 dme-miR-8-3p miRNA MIMAT0000113 Cbl mRNA 38961 Prediction 0.2202 Cbl RAID00884456 dme-miR-975-5p miRNA MIMAT0005491 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID01037841 dme-miR-987-5p miRNA MIMAT0005504 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID01061605 dme-miR-190-5p miRNA MIMAT0005467 Cbl mRNA 38961 Prediction 0.2202 Cbl RAID01123142 dme-miR-283-5p miRNA MIMAT0000347 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID01198972 dme-miR-316-5p miRNA MIMAT0000408 Cbl mRNA 38961 Prediction 0.2202 Cbl RAID01251644 dme-miR-7-5p miRNA MIMAT0000112 Cbl mRNA 38961 Prediction 0.2202 Cbl RAID01454412 dme-miR-14-3p miRNA MIMAT0000120 Cbl mRNA 38961 Prediction 0.2455 Cbl RAID01850455 dme-miR-985-3p miRNA MIMAT0005502 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID02003046 dme-miR-314-3p miRNA MIMAT0000406 Cbl mRNA 38961 Prediction 0.2202 Cbl RAID02214560 dme-miR-1010-3p miRNA MIMAT0005023 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID02384790 dme-miR-998-3p miRNA MIMAT0005518 Cbl mRNA 38961 RT-PCR//Microarray 0.8785 Cbl RAID02473304 dme-miR-9a-5p miRNA MIMAT0000114 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID02604430 dme-miR-960-5p miRNA MIMAT0005474 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID02633436 dme-miR-281-2-5p miRNA MIMAT0000349 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID02983738 dme-miR-305-5p miRNA MIMAT0000391 Cbl mRNA 38961 Prediction 0.2202 Cbl RAID03028665 dme-miR-9b-5p miRNA MIMAT0000395 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID03180192 dme-miR-137-3p miRNA MIMAT0005507 Cbl mRNA 38961 Prediction 0.2202 Cbl RAID03274912 dme-miR-210-3p miRNA MIMAT0000355 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID03377814 dme-miR-304-5p miRNA MIMAT0000390 Cbl mRNA 38961 Prediction 0.1828 Cbl RAID04012932 dme-miR-972-3p miRNA MIMAT0005488 Cbl mRNA 38961 Prediction 0.1828