DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 37602 ppa auaguaAAGUAUACGUUGCAUUUAUgu | || || ||: |||||| agcagaUGCAAAU-AAAUUUAAAUAgu 3 22 1043 1068 [dm3:2R:18573542-18573567:-] 0.6380 135 0 -10.36 -0.1691 MIMAT0000363 dme-miR-288 37602 ppa guacUUUACUUUAGCUGUACUUu ||:| | | ||||||| acacAAGUUAUAAAAACAUGAAa 2 20 1515 1537 [dm3:2R:18573073-18573095:-] 0.5417 151 7 -9.06 -1.2054 MIMAT0005502 dme-miR-985 37602 ppa acGGGCUGGUAACCUUGUAAAc ::|||: | | ||||||| uuUUCGAUGUUAGAAACAUUUu 2 21 358 379 [dm3:2R:18574231-18574252:-] 0.5244 156 7 -9.62 -0.5701 MIMAT0005502 dme-miR-985 37602 ppa acGGGCUGGUAACCUUGUAAAc |:: ::: || ||||||| uuCUUAGUUCUU--AACAUUUg 2 21 1447 1466 [dm3:2R:18573144-18573163:-] 0.5417 141 7 -9.14 -0.6589 MIMAT0005022 dme-miR-1009 37602 ppa gaCUUUACAUUGUUAAAAACUCu |||| | : |||||||| uaGAAACAUUUUCUUUUUUGAGa 2 22 368 390 [dm3:2R:18574220-18574242:-] 0.5174 153 7 -11.49 -1.0157 MIMAT0011791 dme-miR-2283 37602 ppa uaacagcauaaguacuAUAAAAg |||||| auaaauuuaaauaguuUAUUUUa 2 8 1054 1076 [dm3:2R:18573534-18573556:-] 0.6380 120 6 -2.83 -0.1285 MIMAT0012197 dme-miR-2490 37602 ppa aacguugGACGAAAUAGCGA-AGu || ||| ||||| || cacuccgCUCAUUUCUCGCUCUCc 2 17 1188 1211 [dm3:2R:18573399-18573422:-] 0.5216 120 0 -10.82 -0.2748 MIMAT0012198 dme-miR-2491 37602 ppa ucGUUGACGUUUCCGUUGUCGc |||| |||| |||||||| agCAACAACAAAAGCAACAGCg 2 21 1119 1140 [dm3:2R:18573470-18573491:-] 0.6640 176 7 -29.10 -0.8089 MIMAT0012199 dme-miR-2492 37602 ppa aaaCUUUCGAGAGCUGUUUUGUa | || || |||||||| auaGCAAAAACUACACAAAACAc 2 21 1553 1575 [dm3:2R:18573035-18573057:-] 0.5177 152 7 -9.33 -0.5652 MIMAT0012199 dme-miR-2492 37602 ppa aaacuuucgagagcUGUUUUGUa |||||||| acgagcagagaggcACAAAACAa 2 10 176 198 [dm3:2R:18574412-18574434:-] 0.5536 145 7 -12.64 -0.5360 MIMAT0012199 dme-miR-2492 37602 ppa aaaCUUUCGAGAGCUGUU-UUGUa |||| || | :||| |||| aacGAAAACU-UAAGCAACAACAa 2 21 1385 1407 [dm3:2R:18573203-18573225:-] 0.5417 122 0 -6.72 -0.9327 MIMAT0012206 dme-miR-2496* 37602 ppa auGCUACCGGAG-AGUGUGUGCGUg || | || || | :||||||| gcCGCUAGCGUCGGCUUACACGCAc 2 23 786 810 [dm3:2R:18573800-18573824:-] 0.6121 157 7 -23.93 -0.1359 MIMAT0012206 dme-miR-2496* 37602 ppa augcuaccggagaGUG-UGUGCGUg ||| ||||||| gaggcacacacaaCACAACACGCAc 2 12 225 249 [dm3:2R:18574361-18574385:-] 0.5536 146 7 -21.77 -0.3519 MIMAT0012208 dme-miR-2497* 37602 ppa uuguUGAUGUAAAACGUUACGAAUg ::|:|| ||| | ||||||| uuucGUUGCAGUUU-CUAUGCUUAg 2 22 554 577 [dm3:2R:18574033-18574056:-] 0.5278 163 7 -11.44 -0.5341 MIMAT0012212 dme-miR-2499* 37602 ppa cguaacgcgacugcagaUGCGUGc |||||| uuuuguauacuaguaaaACGCACa 2 8 603 626 [dm3:2R:18573984-18574007:-] 0.5278 120 6 -11.80 -0.1000 MIMAT0012215 dme-miR-2500 37602 ppa gacuccaggUGUGUGUUUUAgg ||| ||||||| agcgauaaaACA-ACAAAAUga 3 14 1137 1157 [dm3:2R:18573453-18573473:-] 0.6640 131 0 -6.24 -0.1791 MIMAT0012216 dme-miR-2501 37602 ppa aaucgggUCCGUGAGGUUUGAAUg | |:| ||||||| acguaaaAUGUAACGAAAACUUAa 2 18 1374 1397 [dm3:2R:18573213-18573236:-] 0.5417 141 7 -11.76 -0.9291 MIMAT0012216 dme-miR-2501 37602 ppa aaucggguccgugagGUUUGAAUg :||||||| cuuaaugaaaaugcgUAAACUUAa 2 10 1423 1446 [dm3:2R:18573164-18573187:-] 0.5417 141 7 -8.08 -0.9771 MIMAT0012531 dme-miR-10-3p 37602 ppa uuUGGAGAGAUCUUGGCUUAAAc ||:|| :|: ||||||| cgACUUCGUUG----CGAAUUUg 2 22 1303 1321 [dm3:2R:18573289-18573307:-] 0.5699 144 7 -15.48 -0.2819 MIMAT0000319 dme-miR-263a 37602 ppa cacuuaagaaggucacGGUAAUUg ||||||| aaaagggggagaauaaCCAUUAAc 2 9 1493 1516 [dm3:2R:18573094-18573117:-] 0.5417 140 7 -12.22 -0.8104 MIMAT0000334 dme-miR-92a 37602 ppa uauccggcCCUGUUCACGUUAc | ::: ||||||| acgcauguGUGUGUGUGCAAUg 2 15 1008 1029 [dm3:2R:18573581-18573602:-] 0.6121 142 7 -14.66 -0.1024 MIMAT0000352 dme-miR-79 37602 ppa uaCGAAACCAUUAGAUCGAAAu |||| | || ||||||| auGCUUAGAAAACAUAGCUUUu 2 21 570 591 [dm3:2R:18574019-18574040:-] 0.5278 160 7 -12.69 -0.6444 MIMAT0000352 dme-miR-79 37602 ppa uacgaaACCAUU-AG-AUCGAAAu || || || ||||||| auacacUGAAAACUCAUAGCUUUc 2 17 103 126 [dm3:2R:18574484-18574507:-] 0.7288 146 7 -8.08 -0.7682 MIMAT0000355 dme-miR-210 37602 ppa aucggcgacagUGUGCGUGUu ||||||||| cacacaacacaACACGCACAc 2 11 231 251 [dm3:2R:18574359-18574379:-] 0.5536 150 7 -14.92 -0.2103 MIMAT0000355 dme-miR-210 37602 ppa aucggcGA-CAGUGUGCGUGUu || || | ||||||| uguauaCUAGUAAAACGCACAc 2 16 606 627 [dm3:2R:18573983-18574004:-] 0.5278 150 7 -14.21 -0.9214 MIMAT0000358 dme-miR-92b 37602 ppa cgUCCG-GCCCUGAU-CACGUUAa | || :| | |: ||||||| gcACGCAUGUGUGUGUGUGCAAUg 2 21 1006 1029 [dm3:2R:18573581-18573604:-] 0.6121 142 7 -14.31 -0.1024 MIMAT0000389 dme-miR-31b 37602 ppa guCGAUAAG-GCUGU----AGAACGGu ||| | | | :|| ||||||| ucGCUCUCCACCGCAUUUUUCUUGCCu 2 21 1203 1229 [dm3:2R:18573381-18573407:-] 0.5699 142 7 -17.03 -0.5962 MIMAT0000400 dme-miR-31a 37602 ppa aguCGAUACG-GCUGU----AGAACGGu ||| | | | :|| ||||||| cucGCUCUCCACCGCAUUUUUCUUGCCu 2 21 1202 1229 [dm3:2R:18573381-18573408:-] 0.5699 142 7 -17.56 -0.5925 MIMAT0000402 dme-miR-310 37602 ppa uuuccggcccuuCACACGUUAu ||||||||| acgcauguguguGUGUGCAAUg 2 11 1008 1029 [dm3:2R:18573581-18573602:-] 0.6121 150 7 -16.66 -0.1024 MIMAT0000403 dme-miR-311 37602 ppa aguccggcCACUUACACGUUAu ||| :|||||||| acgcauguGUGUGUGUGCAAUg 2 15 1008 1029 [dm3:2R:18573581-18573602:-] 0.6121 158 7 -20.71 -0.1014 MIMAT0000404 dme-miR-312 37602 ppa agUCCG-GCAGA-GUUCACGUUAu | || :|| | :: ||||||| gcACGCAUGUGUGUGUGUGCAAUg 2 21 1006 1029 [dm3:2R:18573581-18573604:-] 0.6121 146 7 -16.44 -0.1014 MIMAT0000409 dme-miR-317 37602 ppa ugaccuauggugguCGACACAAGu |:||||||| cguuguuguguaguGUUGUGUUCc 2 11 736 759 [dm3:2R:18573851-18573874:-] 0.6121 146 7 -15.55 -0.1327 MIMAT0005490 dme-miR-974 37602 ppa uuaugaugaagaaaCGAGCGAa ||||||| gcucugcccauggaGCUCGCUc 2 9 709 730 [dm3:2R:18573880-18573901:-] 0.5502 140 7 -14.94 -0.1246 MIMAT0005019 dme-miR-1006 37602 ppa gauacuuauucuuuaGCUUAAAu ||||||| uucccgacuucguugCGAAUUUg 2 9 1299 1321 [dm3:2R:18573289-18573311:-] 0.5699 140 7 -9.73 -0.3012

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ppa RAID00019585 dme-miR-252-5p miRNA MIMAT0005516 Ppa mRNA 37602 Prediction 0.1828 Ppa RAID00137617 dme-miR-985-3p miRNA MIMAT0005502 Ppa mRNA 37602 Prediction 0.1828 Ppa RAID00239040 dme-miR-31b-5p miRNA MIMAT0000389 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID00293372 dme-miR-10-3p miRNA MIMAT0012531 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID00668805 dme-miR-313-3p miRNA MIMAT0000405 Ppa mRNA 37602 Prediction 0.1828 Ppa RAID01090144 dme-miR-312-3p miRNA MIMAT0000404 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID01433276 dme-miR-276a-3p miRNA MIMAT0000337 Ppa mRNA 37602 Prediction 0.1828 Ppa RAID01540640 dme-miR-210-3p miRNA MIMAT0000355 Ppa mRNA 37602 Prediction 0.1828 Ppa RAID01543285 dme-miR-311-3p miRNA MIMAT0000403 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID01622066 dme-miR-31a-5p miRNA MIMAT0000400 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID01835512 dme-miR-276b-3p miRNA MIMAT0000354 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID01863744 dme-miR-973-5p miRNA MIMAT0005489 Ppa mRNA 37602 Prediction 0.1828 Ppa RAID01933521 dme-miR-92a-3p miRNA MIMAT0000334 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID01967695 dme-miR-310-3p miRNA MIMAT0000402 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID02279719 dme-miR-980-3p miRNA MIMAT0005496 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID02421921 dme-miR-1002-5p miRNA MIMAT0005483 Ppa mRNA 37602 Prediction 0.1828 Ppa RAID02563373 dme-miR-33-5p miRNA MIMAT0000342 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID02859048 dme-miR-1006-3p miRNA MIMAT0005019 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID02998576 dme-miR-92b-3p miRNA MIMAT0000358 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID03019767 dme-miR-263a-5p miRNA MIMAT0000319 Ppa mRNA 37602 Prediction 0.2381 Ppa RAID03051953 dme-miR-317-3p miRNA MIMAT0000409 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID03223291 dme-miR-79-3p miRNA MIMAT0000352 Ppa mRNA 37602 Prediction 0.2381 Ppa RAID03619490 dme-miR-974-5p miRNA MIMAT0005490 Ppa mRNA 37602 Prediction 0.2202 Ppa RAID03748332 dme-miR-14-3p miRNA MIMAT0000120 Ppa mRNA 37602 Prediction 0.1828 Ppa RAID03769650 dme-miR-1009-3p miRNA MIMAT0005022 Ppa mRNA 37602 Prediction 0.1828