DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 41718 Abi ugGUC-AUGGACUACAUUAUGAGu ||| || | || |||||||: uuCAGUUAGC--AUUUAAUACUUa 2 22 599 620 [dm3:3R:9945167-9945188:-] 0.5717 141 0 -13.10 -0.1571 MIMAT0000330 dme-miR-184* 41718 Abi gccccgcucucuuaCUAUUCc |||||| cagcugacaaugacGAUAAGa 2 8 143 163 [dm3:3R:9945624-9945644:-] 0.5540 120 6 -6.40 -0.1354 MIMAT0000364 dme-miR-289 41718 Abi ucagcguccgagGUG-AAUUUAUAAAu :|| |||||||||| cgccaauccaaaUACUUUAAAUAUUUg 2 15 460 486 [dm3:3R:9945301-9945327:-] 0.5717 157 7 -16.27 -0.8077 MIMAT0000364 dme-miR-289 41718 Abi ucAGCGUCCGAGGUGAAUUU-AUAAAu |:|| || | ||| ||| ||||| gcUUGC-UGCCCAACUAAAACUAUUUa 2 25 316 341 [dm3:3R:9945446-9945471:-] 0.5540 134 0 -13.19 -0.9165 MIMAT0005489 dme-miR-973 41718 Abi uuuUAGCUUCAAG--UUG-GUGGUUGGu ||||| ||| ||| ::|||||| cgcAUCGAUAUUCUAAACAUGCCAACCa 2 23 5 32 [dm3:3R:9945755-9945782:-] 0.5451 152 6 -21.04 -0.1535 MIMAT0005509 dme-miR-991 41718 Abi ugaaaGGUUUGAUGU-UGAAAUu |||| | | | |||||| ugccgCCAAUCCAAAUACUUUAa 2 18 457 479 [dm3:3R:9945308-9945330:-] 0.5717 125 6 -11.83 -1.1871 MIMAT0005022 dme-miR-1009 41718 Abi gaCU-UUAC-AUUGUU-AAAAACUCu || |||| :|:|| ||||||| cuGACAAUGACGAUAAGAUUUUGAGc 2 22 146 171 [dm3:3R:9945616-9945641:-] 0.5540 154 7 -14.51 -0.9586 MIMAT0005026 dme-miR-1013 41718 Abi gcucAAGC-CGUAUGAAAAUa ||:| :||||||||| aacuUUUGUUUAUACUUUUAc 2 17 637 657 [dm3:3R:9945130-9945150:-] 0.5717 155 7 -9.33 -0.8128 MIMAT0011784 dme-miR-2279* 41718 Abi uuaaaGUGUGUGUCUAUAA-AUu | |:||: |||||| || ---gcCUCGCAUCGAUAUUCUAa 2 18 1 20 [dm3:3R:9945767-9945786:-] 0.5451 125 0 -10.65 -0.8633 MIMAT0011786 dme-miR-2280 41718 Abi uauaaaauaacgguUCGAUUcu |||||| augguaaaaauaauAGCUAAua 3 9 760 781 [dm3:3R:9945006-9945027:-] 0.5717 120 0 -4.05 -0.4756 MIMAT0012196 dme-miR-2489 41718 Abi ugacGUUUAUGUU-GUAUGUUAu :||: |||| :||||||| uuaaUAAGGACAAUUAUACAAUu 2 19 175 197 [dm3:3R:9945590-9945612:-] 0.5540 161 7 -12.52 -1.0351 MIMAT0012211 dme-miR-2498 41718 Abi uucAUUCUGCCCUUA----CGGUCAAa ||| || |:| ||||||| auuUAAUACUUAAGUAUUGGCCAGUUg 2 21 609 635 [dm3:3R:9945152-9945178:-] 0.5717 143 7 -13.49 -0.5825 MIMAT0000319 dme-miR-263a 41718 Abi cacUUAAGAAGGUCACGGUAAUug || | ||| |||||| ucuAAACAUGCCA--ACCAUUAca 3 22 16 37 [dm3:3R:9945750-9945771:-] 0.5451 122 0 -10.28 -0.2074 MIMAT0000335 dme-miR-219 41718 Abi guUCUUA-ACGCAAACCUGUUAGu || || | | |||||||: ugAGCAUAUUAAUAAGGACAAUUa 2 22 167 190 [dm3:3R:9945597-9945620:-] 0.5540 132 0 -12.06 -0.1588 MIMAT0000338 dme-miR-277 41718 Abi acagcauggucuaucaCGUAAAu |||||| auauaaauuucaguuaGCAUUUa 2 8 591 613 [dm3:3R:9945174-9945196:-] 0.5717 120 6 -9.82 -0.2133 MIMAT0000361 dme-miR-87 41718 Abi guGUGGACUUUA-AAACGAGUu :||:| |||| |||||||| aaUACUUUAAAUAUUUGCUCAc 2 20 470 491 [dm3:3R:9945296-9945317:-] 0.5717 170 7 -16.13 -1.0430 MIMAT0000362 dme-miR-263b 41718 Abi caCU-UAAGAGGGUCACGGUUc || ||||| |||||| ucGAUAUUCUAAACAUGCCAAc 2 20 9 30 [dm3:3R:9945757-9945778:-] 0.5451 122 6 -13.51 -0.1438 MIMAT0000391 dme-miR-305 41718 Abi gucucguggacuacUUCAUGUua ||||||| aaauuaaacaauacAAGUACAca 3 10 727 749 [dm3:3R:9945038-9945060:-] 0.5717 125 0 -8.39 -0.1838 MIMAT0000407 dme-miR-315 41718 Abi cgaAAGACUCGUU--GUUAGUUUu || ||||| ||||||| gaaUUGCCAGCAAAGGAAUCAAAu 2 20 702 725 [dm3:3R:9945062-9945085:-] 0.5717 150 7 -11.05 -0.8357 MIMAT0005463 dme-miR-iab-4as-5p 41718 Abi gccAUAUGGAAGUC-AUAUG-CAUu |||:|| ||| |||| ||| accUAUGCCCCCAGCAAUACUGUAg 2 21 563 587 [dm3:3R:9945200-9945224:-] 0.5717 127 0 -15.67 -0.7178 MIMAT0005468 dme-miR-193 41718 Abi caacccUGAA-UCAU--CCGGUCAu |||| |||| ||||||| uuuaauACUUAAGUAUUGGCCAGUu 2 17 610 634 [dm3:3R:9945153-9945177:-] 0.5717 158 7 -18.39 -1.0163 MIMAT0005474 dme-miR-960 41718 Abi cgAUACGUUAGACCUUAUGAGu || || ||:| ||||||: guUA-GC-AUUU--AAUACUUa 2 21 603 620 [dm3:3R:9945167-9945184:-] 0.5717 129 0 -10.39 -0.1416 MIMAT0005478 dme-miR-964 41718 Abi uucaauuCGAGGGGAUAAGAUu || :| ||||||| --gccucGCAUCGAUAUUCUAa 2 16 1 20 [dm3:3R:9945767-9945786:-] 0.5451 147 7 -11.73 -1.0244 MIMAT0005479 dme-miR-932 41718 Abi gacGUUACGUGAUGCCUUAACu :|:| :| |:||||||| guuUAGU-UAAAAUGGAAUUGc 2 20 688 708 [dm3:3R:9945079-9945099:-] 0.5717 149 7 -12.04 -0.8502 MIMAT0005480 dme-miR-965 41718 Abi uuccccuuuucgaUAUGCGAau ||||||| aauacaaguacacAUACGCUcu 3 10 736 757 [dm3:3R:9945030-9945051:-] 0.5717 125 0 -8.97 -0.1419 MIMAT0005483 dme-miR-1002 41718 Abi agcgggAAACAUAGGUGAUGAAUu || | ||::| |||||| uuucagUUAGCAUUUAAUACUUAa 2 19 598 621 [dm3:3R:9945166-9945189:-] 0.5717 134 6 -9.45 -0.1640 MIMAT0005485 dme-miR-969 41718 Abi uuuUGAACGAAUCACCUUGAg |:| || : ||||||| aguAUUGGCCAGUUGGAACUu 2 19 621 641 [dm3:3R:9945146-9945166:-] 0.5717 150 7 -12.41 -0.8900 MIMAT0005501 dme-miR-927 41718 Abi ccauuuCGCAUCCUUAAGAUUu || | | ||||||| -gccucGCAUCGAUAUUCUAAa 2 17 1 21 [dm3:3R:9945766-9945786:-] 0.5451 148 7 -8.33 -0.9310 MIMAT0005504 dme-miR-987 41718 Abi guaGUUAGGUCUGAUAAA--UGAAAu ||| : | ||||||| ||||| gccCAACUAAAACUAUUUACACUUUa 2 22 323 348 [dm3:3R:9945439-9945464:-] 0.5540 125 0 -12.14 -0.9710 MIMAT0005504 dme-miR-987 41718 Abi guaguuaGGUCUGAUAAAUGAAAu ||| | | |||||| ccugccgCCAAUCCAAAUACUUUa 2 18 455 478 [dm3:3R:9945309-9945332:-] 0.5717 121 6 -14.75 -0.1356 MIMAT0005516 dme-miR-252 41718 Abi gaggacgcCGU-GAUCAUGAAUc ||| :|| |||||| uucaguuaGCAUUUAAUACUUAa 2 15 599 621 [dm3:3R:9945166-9945188:-] 0.5717 125 6 -9.80 -0.1655 MIMAT0005520 dme-miR-1000 41718 Abi ugacgacacugUCCUGUUAua |||||||| gcauauuaauaAGGACAAUua 3 11 170 190 [dm3:3R:9945597-9945617:-] 0.5540 130 0 -10.85 -0.1588 MIMAT0005520 dme-miR-1000 41718 Abi ugacgacacuguccUGUUAUa |||||| ucaaauuaaauuaaACAAUAc 2 8 720 740 [dm3:3R:9945047-9945067:-] 0.5717 120 6 -5.53 -0.1927 MIMAT0005024 dme-miR-1011 41718 Abi gacGCUCGCUAA-ACUUGGUUAUu | :|| ||| | ||||||| ugcCCGGCUAUUAUACACCAAUAc 2 21 532 555 [dm3:3R:9945232-9945255:-] 0.5717 155 7 -10.56 -0.4712

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Abi RAID00008652 dme-miR-305-5p miRNA MIMAT0000391 Abi mRNA 41718 Prediction 0.1828 Abi RAID00243288 dme-miR-137-3p miRNA MIMAT0005507 Abi mRNA 41718 Prediction 0.1828 Abi RAID00252996 dme-miR-932-5p miRNA MIMAT0005479 Abi mRNA 41718 Prediction 0.2202 Abi RAID00337454 dme-miR-263b-5p miRNA MIMAT0000362 Abi mRNA 41718 Prediction 0.1828 Abi RAID00653789 dme-miR-973-5p miRNA MIMAT0005489 Abi mRNA 41718 Prediction 0.1828 Abi RAID01130251 dme-miR-969-5p miRNA MIMAT0005485 Abi mRNA 41718 Prediction 0.2202 Abi RAID01159175 dme-miR-991-3p miRNA MIMAT0005509 Abi mRNA 41718 Prediction 0.1828 Abi RAID01203494 dme-miR-927-5p miRNA MIMAT0005501 Abi mRNA 41718 Prediction 0.2202 Abi RAID01236445 dme-miR-1002-5p miRNA MIMAT0005483 Abi mRNA 41718 Prediction 0.2202 Abi RAID01487412 dme-miR-971-3p miRNA MIMAT0005487 Abi mRNA 41718 Prediction 0.1828 Abi RAID01502019 dme-miR-87-3p miRNA MIMAT0000361 Abi mRNA 41718 Prediction 0.2202 Abi RAID01535873 dme-miR-976-3p miRNA MIMAT0005492 Abi mRNA 41718 Prediction 0.1828 Abi RAID01782168 dme-miR-263a-5p miRNA MIMAT0000319 Abi mRNA 41718 Prediction 0.1828 Abi RAID01869417 dme-miR-193-3p miRNA MIMAT0005468 Abi mRNA 41718 Prediction 0.2202 Abi RAID01987133 dme-miR-219-5p miRNA MIMAT0000335 Abi mRNA 41718 Prediction 0.1828 Abi RAID02021813 dme-miR-1013-3p miRNA MIMAT0005026 Abi mRNA 41718 Prediction 0.1828 Abi RAID02021917 dme-miR-964-5p miRNA MIMAT0005478 Abi mRNA 41718 Prediction 0.2202 Abi RAID02129505 dme-miR-987-5p miRNA MIMAT0005504 Abi mRNA 41718 Prediction 0.2202 Abi RAID02194726 dme-miR-283-5p miRNA MIMAT0000347 Abi mRNA 41718 Prediction 0.1828 Abi RAID02522211 dme-miR-1009-3p miRNA MIMAT0005022 Abi mRNA 41718 Prediction 0.1828 Abi RAID02522518 dme-miR-14-3p miRNA MIMAT0000120 Abi mRNA 41718 Prediction 0.1828 Abi RAID02580999 dme-miR-1000-5p miRNA MIMAT0005520 Abi mRNA 41718 Prediction 0.2381 Abi RAID02683090 dme-miR-315-5p miRNA MIMAT0000407 Abi mRNA 41718 Prediction 0.2381 Abi RAID02817036 dme-miR-277-3p miRNA MIMAT0000338 Abi mRNA 41718 Prediction 0.2455 Abi RAID02844155 dme-miR-252-5p miRNA MIMAT0005516 Abi mRNA 41718 Prediction 0.2202 Abi RAID02888222 dme-miR-1011-3p miRNA MIMAT0005024 Abi mRNA 41718 Prediction 0.2202 Abi RAID03295739 dme-miR-965-3p miRNA MIMAT0005480 Abi mRNA 41718 Prediction 0.1828 Abi RAID03681862 dme-miR-iab-8-5p miRNA MIMAT0005463 Abi mRNA 41718 Prediction 0.1828 Abi RAID03701876 dme-miR-960-5p miRNA MIMAT0005474 Abi mRNA 41718 Prediction 0.1828