DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 44235 bon auaGUAAAGUAUACGU---UGCAUUUAUGu | |||||||| :| |: ||||||: cagCUUUUCAUAUAUAUUUAUAUAAAUAUa 2 25 1163 1192 [dm3:3R:16437721-16437750:+] 0.5595 155 0 -11.52 -0.1062 MIMAT0000364 dme-miR-289 44235 bon ucaGCGUCCGAGGUGAAUUUAUAAAu | :| | | :|| ||||||||| aagCAUAAGAUGUACAUAAAUAUUUc 2 24 1126 1151 [dm3:3R:16437684-16437709:+] 0.5595 167 7 -9.97 -0.4422 MIMAT0000364 dme-miR-289 44235 bon ucagcGUCCGAGGUGAAUUUAUAAAu :||| ||:: |||||||| aacuuUAGGGUCUG--GAAAUAUUUa 2 22 357 380 [dm3:3R:16436915-16436938:+] 0.5595 154 7 -14.17 -0.9157 MIMAT0000364 dme-miR-289 44235 bon ucagcGUCCGAGGUGAAUUUAUAAAu || |||:: | || |||||| agaauCA-GCUUUUCAUAUAUAUUUa 2 22 1158 1182 [dm3:3R:16437716-16437740:+] 0.5595 135 6 -11.45 -0.2072 MIMAT0005475 dme-miR-961 44235 bon uaGAGUCAA--UGACCAC-UAGUUu || |||| :| | || ||||| cuCUAAGUUUCGCAGAUGAAUCAAa 2 21 975 999 [dm3:3R:16437533-16437557:+] 0.5595 123 0 -9.83 -0.5572 MIMAT0005491 dme-miR-975 44235 bon uauguccuacauccUUCACAAau ||||||| uuuagcuaaauuuuAAGUGUUga 3 10 494 516 [dm3:3R:16437052-16437074:+] 0.5595 125 0 -5.74 -0.2202 MIMAT0005494 dme-miR-978 44235 bon gacgUUAAAUGCCGUGACCUGu |||| | ||||||| acagAAUUAA---AACUGGACa 2 19 1327 1345 [dm3:3R:16437885-16437903:+] 0.5595 142 7 -15.82 -1.1419 MIMAT0005502 dme-miR-985 44235 bon acgggcuGGUAACCUUGUAAac |||| |||||| ugaauauCCAU--AAACAUUga 3 16 514 533 [dm3:3R:16437072-16437091:+] 0.5595 124 0 -9.08 -0.1954 MIMAT0005509 dme-miR-991 44235 bon ugaAAGGUUUGAUGUUGAAAUu | || :|:| ||||||| aggUGCCCGAUU--AACUUUAg 2 20 345 364 [dm3:3R:16436903-16436922:+] 0.5595 148 7 -12.03 -0.2965 MIMAT0005510 dme-miR-992 44235 bon gaAUCAUGGUCUUUGCA-CAUGa | |||| :|||| |||| ugUUGUACGUUUGACGUAGUACc 2 21 1036 1058 [dm3:3R:16437594-16437616:+] 0.5595 120 0 -13.38 -0.3357 MIMAT0005025 dme-miR-1012 44235 bon gaUACCCCUUUUAGA-AACUGAUu ||| :| ||:| ||||||| acAUGUACGAUAUUUAUUGACUAu 2 22 807 830 [dm3:3R:16437365-16437388:+] 0.5595 156 7 -9.53 -0.7616 MIMAT0011784 dme-miR-2279* 44235 bon uuAAAGUGUGUGU-CUAUAAAUu ||| |||:::| |||||||| aaUUUGACAUGUACGAUAUUUAu 2 21 801 823 [dm3:3R:16437359-16437381:+] 0.5595 171 7 -15.74 -0.3168 MIMAT0011784 dme-miR-2279* 44235 bon uuaaaguguGUGUCUAUAAAUu ||:| ||||||| ucagcuuuuCAUAUAUAUUUAu 2 14 1162 1183 [dm3:3R:16437720-16437741:+] 0.5595 153 7 -9.77 -1.1516 MIMAT0011784 dme-miR-2279* 44235 bon uuAAAGUGUGUGUC--UAUAAAUu ||| : :: ::| ||||||| acUUUAGGGUCUGGAAAUAUUUAa 2 21 358 381 [dm3:3R:16436916-16436939:+] 0.5595 143 7 -4.04 -1.0439 MIMAT0011790 dme-miR-2282 44235 bon uaagaUAAAAAUCGAGUGGCUa || ||: :||||||| uugacAUCCUUGUUUCACCGAu 2 18 621 642 [dm3:3R:16437179-16437200:+] 0.5595 153 7 -15.23 -0.4982 MIMAT0011791 dme-miR-2283 44235 bon uaacagcauaaguaCUAUAAAAg |||||||| aaucaucuaaggucGAUAUUUUc 2 10 1265 1287 [dm3:3R:16437823-16437845:+] 0.5595 145 7 -10.34 -0.3961 MIMAT0011791 dme-miR-2283 44235 bon uaacagcAUAAGUA-CUAUAAAag | ||||| |||||| aaucagcUUUUCAUAUAUAUUUau 3 17 1160 1183 [dm3:3R:16437718-16437741:+] 0.5595 135 0 -4.38 -0.1083 MIMAT0011791 dme-miR-2283 44235 bon uaaCAGCAUAAGUACUA-UAAAAg ||| | || || || ||||| gcaGUCAU-UUGAU-AUGAUUUUa 2 21 410 431 [dm3:3R:16436968-16436989:+] 0.5595 120 0 -6.31 -1.1316 MIMAT0011791 dme-miR-2283 44235 bon uaacagcauaaguacuAUAAAAg |||||| gugaaacuauggaaauUAUUUUa 2 8 1577 1599 [dm3:3R:16438135-16438157:+] 0.6277 120 6 -4.65 -0.1208 MIMAT0012199 dme-miR-2492 44235 bon aaacuuucGAGAGCUGUUUUGUa || |:| ||||||| uagcuaucCUAUUG-CAAAACAc 2 16 1502 1523 [dm3:3R:16438060-16438081:+] 0.6277 149 7 -11.24 -0.2931 MIMAT0012205 dme-miR-2495* 44235 bon ccgcccguaaaguuaaUCCACGGc ||||||| agaccuuaaaaagcagAGGUGCCc 2 9 329 352 [dm3:3R:16436887-16436910:+] 0.5595 140 7 -13.72 -0.1396 MIMAT0012209 dme-miR-2497 44235 bon gacguUUGUAACAUUUACAACa ||::|| |:||||||| aauucAAUGUU-UGAAUGUUGu 2 18 1021 1041 [dm3:3R:16437579-16437599:+] 0.5595 159 7 -11.14 -0.4242 MIMAT0012215 dme-miR-2500 44235 bon gacuccaGGUGUGUGUUU-UAGg | | ||||||| ||| uucaacgCAAGACACAAAGAUCa 2 16 1297 1319 [dm3:3R:16437855-16437877:+] 0.5595 123 0 -13.33 -0.5481 MIMAT0012531 dme-miR-10-3p 44235 bon uuUGGAGA-GAUCUU--GGCUUAAAc | :||| | | | :||||||| aaAGUUCUACCAUCAUUUCGAAUUUg 2 22 781 806 [dm3:3R:16437339-16437364:+] 0.5595 143 7 -15.88 -0.6803 MIMAT0012531 dme-miR-10-3p 44235 bon uuuggAG-AGAUCUUGGCU-UAAAc || |||| :::||| |||| ccaaaUCAUCUAAGGUCGAUAUUUu 2 19 1262 1286 [dm3:3R:16437820-16437844:+] 0.5595 125 0 -13.21 -0.5714 MIMAT0000319 dme-miR-263a 44235 bon cacuUAAGAAGGUCACGGUAAUUg || :| ::| | ||||||| auauAUAUUAUUAUUACCAUUAAa 2 21 743 766 [dm3:3R:16437301-16437324:+] 0.5595 156 7 -8.35 -1.2725 MIMAT0000333 dme-miR-275 44235 bon gcgcgCGAUGAAGU-C-CAUG-GACu |:||:| || | |||| ||| cuucaGUUAUUACACGCGUACGCUGc 2 19 181 206 [dm3:3R:16436739-16436764:+] 0.5595 120 0 -22.24 -0.1227 MIMAT0000347 dme-miR-283 44235 bon ucUUAAUGG--UCGA-CUAUAAAu ||| |:| || | ||||||| caAAUCAUCUAAGGUCGAUAUUUu 2 20 1263 1286 [dm3:3R:16437821-16437844:+] 0.5595 153 7 -7.09 -0.4833 MIMAT0000347 dme-miR-283 44235 bon ucUUAAUGGUCGA--CUAUAAAu | ||: || | ||||||| gaAUUUGACAUGUACGAUAUUUa 2 20 800 822 [dm3:3R:16437358-16437380:+] 0.5595 146 7 -10.17 -0.7287 MIMAT0000347 dme-miR-283 44235 bon ucuuaauggucgacUAUAAAu |||||| ucagcuuuucauauAUAUUUa 2 8 1162 1182 [dm3:3R:16437720-16437740:+] 0.5595 120 6 -8.21 -0.2072 MIMAT0000352 dme-miR-79 44235 bon uacgaaaccauuagaUCGAAAu |||||| uuccgacacagaaucAGCUUUu 2 8 1149 1170 [dm3:3R:16437707-16437728:+] 0.5595 120 6 -8.91 -0.1039 MIMAT0000407 dme-miR-315 44235 bon cgAAAGACUCGUUGUUAGUUUu |||| || | ||||||| agUUUCGCAG-AUGAAUCAAAc 2 21 980 1000 [dm3:3R:16437538-16437558:+] 0.5595 154 7 -8.90 -0.1913 MIMAT0000413 dme-miR-iab-4-3p 44235 bon caAUGCAUAUGACUUCCAUAUGGc || |||| | ||||||| uaUAACUAUA-AAUAUGUAUACCu 2 23 540 562 [dm3:3R:16437098-16437120:+] 0.5595 148 7 -9.84 -1.0583 MIMAT0000413 dme-miR-iab-4-3p 44235 bon caaUG-CAUAUGACUUCCAUAUGGc || | |||| ||||||| aaaACAGCAUAC-AUUCGUAUACCa 2 22 911 934 [dm3:3R:16437469-16437492:+] 0.5595 142 7 -11.25 -0.7710 MIMAT0000413 dme-miR-iab-4-3p 44235 bon caauGCAUAUGACUUCCAU-AUGGc :||| ::| :| ||| |||| auguUGUACGUUUGACGUAGUACCa 2 21 1035 1059 [dm3:3R:16437593-16437617:+] 0.5595 124 0 -12.98 -0.4973 MIMAT0005472 dme-miR-375 44235 bon auugaauucggUUUGCUUGUUu |:|:|||||| gaaaaacaauaAGAUGAACAAa 2 12 708 729 [dm3:3R:16437266-16437287:+] 0.5595 135 6 -11.91 -0.1570 MIMAT0005476 dme-miR-962 44235 bon cuGUCGUAGUUAAAGAGAUG--GAAUa |||||| ||| | ||| |||| aaCAGCAUACAUUCGUAUACCACUUAa 2 24 913 939 [dm3:3R:16437471-16437497:+] 0.5595 123 0 -15.58 -0.9239 MIMAT0005476 dme-miR-962 44235 bon cuGUCGUAGUUAA-AGAGAUGG-AAUa :| :|| ||| |: :|||| ||| auUAAUAUAUAUUAUUAUUACCAUUAa 2 24 739 765 [dm3:3R:16437297-16437323:+] 0.5595 122 0 -5.70 -1.2555 MIMAT0005479 dme-miR-932 44235 bon gacGUUACGUGAU-GCCUUAACu |||| | :|: :||||||| aacCAAU-CUUUGUUGGAAUUGu 2 20 668 689 [dm3:3R:16437226-16437247:+] 0.5595 152 7 -13.14 -0.9986 MIMAT0005483 dme-miR-1002 44235 bon agcgggAAACAUAGGUGAUGAAUu | || || :|||||||| acuguaUAUGAAUGUACUACUUAc 2 19 1641 1664 [dm3:3R:16438199-16438222:+] 0.6277 162 7 -13.33 -0.9657 MIMAT0005484 dme-miR-968 44235 bon guUGG-GAAAU-UACCU--AUGAUGAAu ||| || || ||| | |||||||| uaACCACUGUAUAUGAAUGUACUACUUa 2 23 1636 1663 [dm3:3R:16438194-16438221:+] 0.6277 163 7 -19.93 -1.0913 MIMAT0005492 dme-miR-976 44235 bon cguAACUACUAUUG-AUUAGGUu | |: :||:: ||||||| gccUGGGCAGUAGUGUAAUCCAa 2 20 140 162 [dm3:3R:16436698-16436720:+] 0.5595 146 7 -12.23 -0.3083 MIMAT0005504 dme-miR-987 44235 bon guaguuaggucugAUAAAUGAAAu |||||||||| uuuguuggaauugUAUUUACUUUu 2 12 676 699 [dm3:3R:16437234-16437257:+] 0.5595 155 7 -9.95 -0.7083 MIMAT0005511 dme-miR-929 44235 bon guuagacuGAGGCAAUCCCUc :|:| ||||||| uguauaccUUUCAUUAGGGAu 2 14 554 574 [dm3:3R:16437112-16437132:+] 0.5595 149 7 -11.26 -0.5999 MIMAT0005516 dme-miR-252 44235 bon gaggacgccgugaucAUGAAUc |||||| uguauaugaauguacUACUUAc 2 8 1643 1664 [dm3:3R:16438201-16438222:+] 0.6277 120 6 -7.24 -0.1008 MIMAT0005518 dme-miR-998 44235 bon cuCGACUUAGAGUAC-CACGAu || || :| ||| ||||| uaGCGGACGUUGAUGUGUGCUa 2 20 1482 1503 [dm3:3R:16438040-16438061:+] 0.5766 123 0 -18.35 -0.4295 MIMAT0005019 dme-miR-1006 44235 bon gauacuuauucuuuAGCUUAAAu |||||||| guucuaccaucauuUCGAAUUUg 2 10 784 806 [dm3:3R:16437342-16437364:+] 0.5595 145 7 -9.22 -0.6766 MIMAT0005030 dme-miR-1017 44235 bon ccuacucaaacccaucUCGAAAg |||||| uuuccgacacagaaucAGCUUUu 2 8 1148 1170 [dm3:3R:16437706-16437728:+] 0.5595 120 6 -5.21 -0.1049

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score bon RAID00103580 dme-miR-998-3p miRNA MIMAT0005518 bon mRNA 44235 Prediction 0.1828 bon RAID00569931 dme-miR-iab-4-3p miRNA MIMAT0000413 bon mRNA 44235 Prediction 0.2202 bon RAID00663938 dme-miR-13b-3p miRNA MIMAT0000119 bon mRNA 44235 Prediction 0.1828 bon RAID00834137 dme-miR-957-3p miRNA MIMAT0005470 bon mRNA 44235 Prediction 0.1828 bon RAID00916018 dme-miR-932-5p miRNA MIMAT0005479 bon mRNA 44235 Prediction 0.2202 bon RAID01051537 dme-miR-13a-3p miRNA MIMAT0000118 bon mRNA 44235 Prediction 0.2202 bon RAID01104440 dme-miR-304-5p miRNA MIMAT0000390 bon mRNA 44235 Prediction 0.2202 bon RAID01106260 dme-miR-308-3p miRNA MIMAT0000399 bon mRNA 44235 Prediction 0.1828 bon RAID01177803 dme-mir-2a-1 miRNA MI0000117 bon mRNA 44235 Prediction 0.1828 bon RAID01301620 dme-miR-2b-3p miRNA MIMAT0000107 bon mRNA 44235 Prediction 0.1828 bon RAID01388795 dme-miR-978-3p miRNA MIMAT0005494 bon mRNA 44235 Prediction 0.1828 bon RAID01469218 dme-mir-iab-4 miRNA MI0000432 bon mRNA 44235 Prediction 0.1828 bon RAID01700682 dme-miR-2a-3p miRNA MIMAT0000106 bon mRNA 44235 Prediction 0.1828 bon RAID01713808 dme-miR-275-3p miRNA MIMAT0000333 bon mRNA 44235 Prediction 0.1828 bon RAID01824119 dme-miR-991-3p miRNA MIMAT0005509 bon mRNA 44235 Prediction 0.1828 bon RAID01900201 dme-miR-1002-5p miRNA MIMAT0005483 bon mRNA 44235 Prediction 0.2381 bon RAID02192763 dme-miR-976-3p miRNA MIMAT0005492 bon mRNA 44235 Prediction 0.2202 bon RAID02252966 dme-miR-968-5p miRNA MIMAT0005484 bon mRNA 44235 Prediction 0.2381 bon RAID02310867 dme-miR-1006-3p miRNA MIMAT0005019 bon mRNA 44235 Prediction 0.2202 bon RAID02397458 dme-miR-375-3p miRNA MIMAT0005472 bon mRNA 44235 Prediction 0.2381 bon RAID02466369 dme-miR-263a-5p miRNA MIMAT0000319 bon mRNA 44235 Prediction 0.1828 bon RAID02538735 dme-miR-317-3p miRNA MIMAT0000409 bon mRNA 44235 Prediction 0.1828 bon RAID02657327 dme-miR-79-3p miRNA MIMAT0000352 bon mRNA 44235 Prediction 0.1828 bon RAID02769118 dme-miR-11-3p miRNA MIMAT0000116 bon mRNA 44235 Prediction 0.1828 bon RAID02806404 dme-miR-987-5p miRNA MIMAT0005504 bon mRNA 44235 Prediction 0.2381 bon RAID02911912 dme-miR-283-5p miRNA MIMAT0000347 bon mRNA 44235 Prediction 0.1828 bon RAID03123260 dme-miR-1012-3p miRNA MIMAT0005025 bon mRNA 44235 Prediction 0.1828 bon RAID03194630 dme-miR-1017-3p miRNA MIMAT0005030 bon mRNA 44235 Prediction 0.1828 bon RAID03288943 dme-miR-1000-5p miRNA MIMAT0005520 bon mRNA 44235 Prediction 0.2202 bon RAID03379344 dme-miR-315-5p miRNA MIMAT0000407 bon mRNA 44235 Prediction 0.2381 bon RAID03406113 dme-miR-929-3p miRNA MIMAT0005511 bon mRNA 44235 Prediction 0.2202 bon RAID03458486 dme-miR-6-3p miRNA MIMAT0000111 bon mRNA 44235 Prediction 0.2202 bon RAID03551528 dme-miR-252-5p miRNA MIMAT0005516 bon mRNA 44235 Prediction 0.1828 bon RAID03553295 dme-miR-962-5p miRNA MIMAT0005476 bon mRNA 44235 Prediction 0.2202 bon RAID03824705 dme-miR-10-3p miRNA MIMAT0012531 bon mRNA 44235 Prediction 0.2202 bon RAID03837606 dme-miR-2c-3p miRNA MIMAT0000411 bon mRNA 44235 Prediction 0.1828