DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 35998 Uba1 auaguaaaguauacguugcaUUUAUGu |||||| aaaauaauacgcaucauacgAAAUACa 2 8 199 225 [dm3:2R:5576048-5576074:-] 0.5691 120 6 -12.65 -0.1284 MIMAT0000360 dme-miR-287 35998 Uba1 cacguuugcuaaaaGUUGUGu |||||| gacucgacuaaaagCAACACu 2 8 228 248 [dm3:2R:5576025-5576045:-] 0.5691 120 6 -9.76 -0.1828 MIMAT0000364 dme-miR-289 35998 Uba1 ucagcguccGAGGUGAAUUUAUAAAu ||:|||| | |||||| aaaauuucuCUUCACUCAUAUAUUUu 2 18 372 397 [dm3:2R:5575876-5575901:-] 0.5691 141 6 -13.19 -0.1251 MIMAT0005465 dme-miR-954 35998 Uba1 uguGUGUUGC-GUUGU-GGGUCu ||: ||| |:|| ||||| cacCAUUACGAGAGCAGCCCAGa 2 19 132 154 [dm3:2R:5576119-5576141:-] 0.5691 121 0 -22.17 -1.0676 MIMAT0005499 dme-miR-983 35998 Uba1 agUAAUCAAGCUUUGCAUAAUa |||| || | :|||||| uaAUUACGUC--AUUGUAUUAa 2 21 418 437 [dm3:2R:5575836-5575855:-] 0.5691 137 6 -8.41 -0.2603 MIMAT0005021 dme-miR-1008 35998 Uba1 acaUUUGUGUUUUUCGACAcu |||:: | |||||||| agcAAAUGAAUAAAGCUGUau 3 19 447 467 [dm3:2R:5575806-5575826:-] 0.5691 146 0 -10.03 -0.2393 MIMAT0011784 dme-miR-2279* 35998 Uba1 uuaAAGUGUGUGUCUAUAAAuu ||||| ||: |||||| cucUUCACUCAU--AUAUUUuu 3 20 379 398 [dm3:2R:5575875-5575894:-] 0.5691 140 0 -8.97 -0.1095 MIMAT0011787 dme-miR-2280* 35998 Uba1 agucaaucgaacCUUCAUUUaa |:|||||| auuguauuaaaaGGAGUAAAgc 3 11 428 449 [dm3:2R:5575824-5575845:-] 0.5691 126 0 -6.99 -0.1025 MIMAT0011791 dme-miR-2283 35998 Uba1 uaACAGCA-UAAGUACUAUAAAAg | || | | |||| ||||||| uuUCUCUUCACUCAU-AUAUUUUu 2 22 376 398 [dm3:2R:5575875-5575897:-] 0.5691 158 7 -6.13 -1.1553 MIMAT0012202 dme-miR-2494* 35998 Uba1 aaggguuagaccacGUGAAUg |||||| ucgacuaaaagcaaCACUUAa 2 8 231 251 [dm3:2R:5576022-5576042:-] 0.5691 120 6 -9.78 -0.1576 MIMAT0012209 dme-miR-2497 35998 Uba1 gaCGUUUGUAACAUUUACA-ACa | || :|| |||||| || uaGAAAUUAUAUAAAAUGUGUGu 2 21 157 179 [dm3:2R:5576094-5576116:-] 0.5691 120 0 -5.56 -0.9014 MIMAT0012212 dme-miR-2499* 35998 Uba1 cguaacgcgacugcagAUGCGUGc ||||||: aggaauggcaaaauaaUACGCAUc 2 9 190 213 [dm3:2R:5576060-5576083:-] 0.5691 124 0 -12.43 -0.1105 MIMAT0000105 dme-miR-1 35998 Uba1 gagguaugaagAAAUGUAAGGu | ||:||||| ------gcccgUCUAUAUUCCu 2 12 1 16 [dm3:2R:5576257-5576272:-] 0.6268 131 0 -11.62 -0.1994 MIMAT0000319 dme-miR-263a 35998 Uba1 cacuUAAGAAGGUCA-CGGUAAUUg |||| | | ||||||| cuauAUUCCUAAUUUAACCAUUAAa 2 21 7 31 [dm3:2R:5576242-5576266:-] 0.4903 143 7 -9.88 -1.3257 MIMAT0000338 dme-miR-277 35998 Uba1 acaGCAUGGUCUAU-CACGUAAAu :|| |:|| |: ||||||| uacUGU-CUAGCUGUUUGCAUUUu 2 21 98 120 [dm3:2R:5576153-5576175:-] 0.4903 149 7 -12.09 -0.9664 MIMAT0000347 dme-miR-283 35998 Uba1 ucUUAAUGGUCGAC-UAUAAAu ||| | ||||| |||||| ugAAUAA--AGCUGUAUAUUUc 2 20 453 472 [dm3:2R:5575801-5575820:-] 0.5691 128 6 -11.68 -0.7657 MIMAT0000347 dme-miR-283 35998 Uba1 ucuuaauggucgacUAUAAAu |||||| uucucuucacucauAUAUUUu 2 8 377 397 [dm3:2R:5575876-5575896:-] 0.5691 120 6 -2.99 -0.1289 MIMAT0005479 dme-miR-932 35998 Uba1 gaCGUUACGUGAU--GCC-UUAACu ||| || |:|| :|| ||||| ucGCAUUG-AUUAAUUGGAAAUUGa 2 21 328 351 [dm3:2R:5575922-5575945:-] 0.5691 121 0 -13.82 -1.1591 MIMAT0005487 dme-miR-971 35998 Uba1 agugacauucuucaUUGUGGUu ||||||| auuuuaauuuucacAACACCAu 2 9 116 137 [dm3:2R:5576136-5576157:-] 0.5297 140 7 -9.79 -0.7499 MIMAT0005503 dme-miR-986 35998 Uba1 agucAGUGUUGCGAUAA-GCUCu ||||||| | ||| |||| auuuUCACAACACCAUUACGAGa 2 19 122 144 [dm3:2R:5576129-5576151:-] 0.5297 138 0 -18.86 -0.7038 MIMAT0005507 dme-miR-137 35998 Uba1 gaugcacauaagagUUCGUUau |||||| aaagacucgacuaaAAGCAAca 3 9 225 246 [dm3:2R:5576027-5576048:-] 0.5691 120 0 -7.02 -0.1542 MIMAT0005024 dme-miR-1011 35998 Uba1 gacgcucGCUAAACUUGGUUAUu | | || ||||| || uauauucCUAAUUUAACCAUUAa 2 17 8 30 [dm3:2R:5576243-5576265:-] 0.4903 124 0 -6.37 -0.1283

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Uba1 RAID00054822 dme-miR-981-3p miRNA MIMAT0005497 Uba1 mRNA 35998 Prediction 0.1828 Uba1 RAID00204095 dme-miR-932-5p miRNA MIMAT0005479 Uba1 mRNA 35998 Prediction 0.1828 Uba1 RAID00395080 dme-miR-137-3p miRNA MIMAT0005507 Uba1 mRNA 35998 Prediction 0.1828 Uba1 RAID00711947 dme-miR-1011-3p miRNA MIMAT0005024 Uba1 mRNA 35998 Prediction 0.1828 Uba1 RAID00865312 dme-miR-283-5p miRNA MIMAT0000347 Uba1 mRNA 35998 Prediction 0.1828 Uba1 RAID01866053 dme-miR-971-3p miRNA MIMAT0005487 Uba1 mRNA 35998 Prediction 0.2202 Uba1 RAID01897239 dme-miR-1-3p miRNA MIMAT0000105 Uba1 mRNA 35998 Prediction 0.1828 Uba1 RAID02653931 dme-miR-277-3p miRNA MIMAT0000338 Uba1 mRNA 35998 Prediction 0.2381 Uba1 RAID03253024 dme-miR-986-5p miRNA MIMAT0005503 Uba1 mRNA 35998 Prediction 0.1828 Uba1 RAID03889176 dme-miR-263a-5p miRNA MIMAT0000319 Uba1 mRNA 35998 Prediction 0.1828