DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000344 dme-miR-281-1* 35378 Dap160 ugacAGCUGCCUGUCGAGAGAa || | | :|||||||| ccgaUCCA-GCUUAGCUCUCUa 2 19 11 31 [dm3:2L:21137446-21137466:-] 0.5736 148 7 -17.15 -1.3359 MIMAT0000364 dme-miR-289 35378 Dap160 ucagcguccgAGGUGAAUUUAUAAAu |::::| ||||||| uuaguguuuaUUUGUUGCAAUAUUUc 2 17 137 162 [dm3:2L:21137315-21137340:-] 0.5736 148 7 -7.80 -0.5605 MIMAT0005464 dme-miR-iab-4as-3p 35378 Dap160 auUUGCAUAUGACUUACAUAGg ||: | | | :||||||| gcAAUAUUUCCAAGAUGUAUCu 2 21 153 174 [dm3:2L:21137303-21137324:-] 0.6885 152 7 -9.15 -1.2323 MIMAT0005464 dme-miR-iab-4as-3p 35378 Dap160 auUUGC-AUAUG--ACUUACAUAGg |::| ||| : | ||||||: cuAGUGUUAUUUCAUUUAUGUAUUu 2 21 258 282 [dm3:2L:21137195-21137219:-] 0.5042 126 0 -8.32 -0.1621 MIMAT0005482 dme-miR-967 35378 Dap160 gcgaAGAGG-UCUCCAUAGAga |:||| ||| |||||| aauaUUUCCAAGAUGUAUCUaa 3 18 155 176 [dm3:2L:21137301-21137322:-] 0.6885 144 0 -15.68 -0.5470 MIMAT0005488 dme-miR-972 35378 Dap160 cgGAUUUAUA-AGCAUAACAUGu :|: || | | |||||||| uuUUGUAUUUCACUUAUUGUACa 2 21 303 325 [dm3:2L:21137152-21137174:-] 0.4871 151 7 -11.56 -1.2676 MIMAT0005491 dme-miR-975 35378 Dap160 uauguccuacauccuUCACAAAu ||||||| ugaaacccccacuuuAGUGUUUa 2 9 124 146 [dm3:2L:21137331-21137353:-] 0.5736 140 7 -8.37 -1.2341 MIMAT0011784 dme-miR-2279* 35378 Dap160 uuAAAGUGUGUGUCUAUAAAUu |||||: :|: :|||||| uaUUUCAUUUAU--GUAUUUAu 2 21 265 284 [dm3:2L:21137193-21137212:-] 0.5042 141 6 -8.87 -0.1647 MIMAT0011784 dme-miR-2279* 35378 Dap160 uuaaAG-UGUGUGUCUAUAAAuu || :||:| |||||| uuagUCGGCAUAAUUAUAUUUug 3 19 285 307 [dm3:2L:21137170-21137192:-] 0.4957 129 0 -7.26 -0.1321 MIMAT0011784 dme-miR-2279* 35378 Dap160 uuaAAGUGUGUGUCUAUAAAuu ||::: ::|| |||||| uuaUUUGU-UGCA-AUAUUUcc 3 20 144 163 [dm3:2L:21137314-21137333:-] 0.6885 127 0 -1.70 -0.1715 MIMAT0011784 dme-miR-2279* 35378 Dap160 uuaaagugugugucuAUAAAUu |||||| auuguuaauugugauUAUUUAg 2 8 176 197 [dm3:2L:21137280-21137301:-] 0.6885 120 6 -3.53 -0.4006 MIMAT0011791 dme-miR-2283 35378 Dap160 uaaCAGCAUAAGUACUAUAAAAg |||| | || ||||||| uuaGUCGGCAUAAUUAUAUUUUg 2 21 285 307 [dm3:2L:21137170-21137192:-] 0.4957 160 7 -10.50 -1.0780 MIMAT0012202 dme-miR-2494* 35378 Dap160 aaggguuagaccacGUGAAUg |||||| uauauuuuguauuuCACUUAu 2 8 299 319 [dm3:2L:21137158-21137178:-] 0.4957 120 6 -9.87 -0.1677 MIMAT0012214 dme-miR-2500* 35378 Dap160 ccaUAACAUAUACACA-CAAG-GAAUg ||| ||| | ||| ||| |||| auaAUUAUAU-UUUGUAUUUCACUUAu 2 23 294 319 [dm3:2L:21137158-21137183:-] 0.4957 127 0 -7.01 -1.1632 MIMAT0000105 dme-miR-1 35378 Dap160 gaGGUAUGAAGAAAUGUAAGGu |: || || ||||||| cuCUCUAGUU-ACCACAUUCCg 2 21 25 45 [dm3:2L:21137432-21137452:-] 0.5161 142 7 -15.59 -0.5482 MIMAT0000106 dme-miR-2a 35378 Dap160 cgaGUAGUUU--CGACCGACACUAu :||| || |:| :|||||| augUAUCUAAUUGUUAAUUGUGAUu 2 21 167 191 [dm3:2L:21137286-21137310:-] 0.6885 139 6 -12.37 -0.4266 MIMAT0000107 dme-miR-2b 35378 Dap160 cgaGGAGUUUCGACCGACACUAu :|| | |:| :|||||| guaUCUAAUUGUUAAUUGUGAUu 2 21 169 191 [dm3:2L:21137286-21137308:-] 0.6885 136 6 -12.65 -0.4266 MIMAT0000111 dme-miR-6 35378 Dap160 uuuuucUUGUCGG-UGACACUAu ||: |:: |:|||||| guaucuAAUUGUUAAUUGUGAUu 2 17 169 191 [dm3:2L:21137286-21137308:-] 0.6885 135 6 -9.72 -0.4234 MIMAT0000116 dme-miR-11 35378 Dap160 cguucUUGA-GUCUGACACUAc ||:| : |:|||||| uaucuAAUUGUUAAUUGUGAUu 2 17 170 191 [dm3:2L:21137286-21137307:-] 0.6885 131 6 -7.86 -0.4203 MIMAT0000118 dme-miR-13a 35378 Dap160 ugaGUAGUUUUAC---CGACACUAu :||| || || :|||||| augUAUCUAAUUGUUAAUUGUGAUu 2 20 167 191 [dm3:2L:21137286-21137310:-] 0.6885 134 6 -10.57 -0.4266 MIMAT0000119 dme-miR-13b 35378 Dap160 ugagcAGUUUUAC---CGACACUAu || || || :|||||| auguaUCUAAUUGUUAAUUGUGAUu 2 18 167 191 [dm3:2L:21137286-21137310:-] 0.6885 128 6 -11.91 -0.4266 MIMAT0000334 dme-miR-92a 35378 Dap160 uauccggcccuguucACGUUAc |||||| uuaguguuuauuuguUGCAAUa 2 8 137 158 [dm3:2L:21137319-21137340:-] 0.5736 120 6 -5.55 -0.2289 MIMAT0000341 dme-miR-279 35378 Dap160 aauuacucacaccuAGAUCAgu |||||| ucgcuuagcuaauuUCUAGUgu 3 9 243 264 [dm3:2L:21137213-21137234:-] 0.5042 120 0 -5.34 -0.1344 MIMAT0000347 dme-miR-283 35378 Dap160 ucUUAAUGGUCG--ACU-AUAAAu ||||:::| : ||| ||||| cuAAUUGUUAAUUGUGAUUAUUUa 2 20 173 196 [dm3:2L:21137281-21137304:-] 0.6885 122 0 -9.76 -1.2761 MIMAT0000349 dme-miR-281-2* 35378 Dap160 ugacAGCUGCCUAUCGAGAGAa || | | ||||||||| ccgaUCCA-GCUUAGCUCUCUa 2 19 11 31 [dm3:2L:21137446-21137466:-] 0.5736 152 7 -16.82 -1.3359 MIMAT0000358 dme-miR-92b 35378 Dap160 cguccggcccugaucACGUUAa |||||| uuaguguuuauuuguUGCAAUa 2 8 137 158 [dm3:2L:21137319-21137340:-] 0.5736 120 6 -8.47 -0.2289 MIMAT0000359 dme-miR-286 35378 Dap160 ucgugcucacaagccAGAUCAgu |||||| uucgcuuagcuaauuUCUAGUgu 3 9 242 264 [dm3:2L:21137213-21137235:-] 0.5042 120 0 -7.86 -0.1357 MIMAT0000390 dme-miR-304 35378 Dap160 gaguGUAAAUGUUUAACUCUAAu :| ||:: ||||| |||| uaucUAAUUGUUAAUUGUGAUUa 2 20 170 192 [dm3:2L:21137285-21137307:-] 0.6885 135 0 -10.09 -0.2729 MIMAT0000399 dme-miR-308 35378 Dap160 gagUGUCAUAUUAGGACACUAa |: || ||| :|||||| cuaAUUGU-UAA--UUGUGAUu 2 20 173 191 [dm3:2L:21137286-21137304:-] 0.6885 130 6 -8.79 -0.3992 MIMAT0000402 dme-miR-310 35378 Dap160 uuuccggcccuucacACGUUAu |||||| uuaguguuuauuuguUGCAAUa 2 8 137 158 [dm3:2L:21137319-21137340:-] 0.5736 120 6 -8.69 -0.2289 MIMAT0000403 dme-miR-311 35378 Dap160 aguccggccacuuacACGUUAu |||||| uuaguguuuauuuguUGCAAUa 2 8 137 158 [dm3:2L:21137319-21137340:-] 0.5736 120 6 -10.09 -0.2248 MIMAT0000404 dme-miR-312 35378 Dap160 aguccggcagaguucACGUUAu |||||| uuaguguuuauuuguUGCAAUa 2 8 137 158 [dm3:2L:21137319-21137340:-] 0.5736 120 6 -11.76 -0.2228 MIMAT0000405 dme-miR-313 35378 Dap160 agcccgacacuuuucACGUUAu |||||| uuaguguuuauuuguUGCAAUa 2 8 137 158 [dm3:2L:21137319-21137340:-] 0.5736 120 6 -8.98 -0.2208 MIMAT0000411 dme-miR-2c 35378 Dap160 cggGUAGUUU--CGACCGACACUAu :||| || |:| :|||||| augUAUCUAAUUGUUAAUUGUGAUu 2 21 167 191 [dm3:2L:21137286-21137310:-] 0.6885 139 6 -12.76 -0.4266 MIMAT0005492 dme-miR-976 35378 Dap160 cgUAACUACUAUUGA-UUAGGUu ||| | | ||:| |||||| aaAUU-AAAAGAAUUAAAUCCAa 2 21 327 348 [dm3:2L:21137129-21137150:-] 0.4871 122 6 -8.80 -1.3323 MIMAT0005513 dme-miR-994 35378 Dap160 uagUGCCGAUGAU-AAAG-GAAUc || || ||| |||| |||| gcgACCUCU-CUAUUUUCGCUUAg 2 20 228 250 [dm3:2L:21137227-21137249:-] 0.5042 120 0 -13.39 -1.0232 MIMAT0005513 dme-miR-994 35378 Dap160 uaGUGCCGAUGAUAAAG-GAAUc :|: :| |||||| |||| auUAUAUUUUGUAUUUCACUUAu 2 21 297 319 [dm3:2L:21137158-21137180:-] 0.4957 120 0 -7.47 -1.1688 MIMAT0005515 dme-miR-996 35378 Dap160 ucugcUCGUACUUUAGAUCAgu ||| | | |||||| cgcuuAGC-UAAUUUCUAGUgu 3 18 244 264 [dm3:2L:21137213-21137233:-] 0.5042 127 0 -8.13 -0.1331

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Dap160 RAID00006628 dme-miR-312-3p miRNA MIMAT0000404 Dap160 mRNA 35378 Prediction 0.2202 Dap160 RAID00045243 dme-miR-7-5p miRNA MIMAT0000112 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID00094139 dme-mir-281-1 miRNA MI0000366 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID00187007 dme-miR-970-3p miRNA MIMAT0005486 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID00205101 dme-miR-974-5p miRNA MIMAT0005490 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID00254690 dme-miR-305-5p miRNA MIMAT0000391 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID00315415 dme-miR-313-3p miRNA MIMAT0000405 Dap160 mRNA 35378 Prediction 0.2202 Dap160 RAID00319677 dme-miR-6-3p miRNA MIMAT0000111 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID00499378 dme-miR-975-5p miRNA MIMAT0005491 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID00709873 dme-miR-972-3p miRNA MIMAT0005488 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID00941038 dme-miR-286-3p miRNA MIMAT0000359 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID01002863 dme-miR-932-5p miRNA MIMAT0005479 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID01042729 dme-miR-1-3p miRNA MIMAT0000105 Dap160 mRNA 35378 Prediction 0.2381 Dap160 RAID01045173 dme-miR-2c-3p miRNA MIMAT0000411 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID01303880 dme-miR-976-3p miRNA MIMAT0005492 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID01317862 dme-miR-994-5p miRNA MIMAT0005513 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID01794036 dme-miR-2a-3p miRNA MIMAT0000106 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID01933161 dme-miR-308-3p miRNA MIMAT0000399 Dap160 mRNA 35378 Prediction 0.2202 Dap160 RAID02009678 dme-miR-283-5p miRNA MIMAT0000347 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID02076762 dme-miR-2b-3p miRNA MIMAT0000107 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID02120899 dme-miR-11-3p miRNA MIMAT0000116 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID02186149 dme-miR-1011-3p miRNA MIMAT0005024 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID02368281 dme-miR-279-3p miRNA MIMAT0000341 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID02433689 dme-miR-996-3p miRNA MIMAT0005515 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID02666351 dme-miR-92b-3p miRNA MIMAT0000358 Dap160 mRNA 35378 Prediction 0.2381 Dap160 RAID02817243 dme-mir-281-2 miRNA MI0000370 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID02929857 dme-miR-92a-3p miRNA MIMAT0000334 Dap160 mRNA 35378 Prediction 0.2202 Dap160 RAID03537700 dme-miR-310-3p miRNA MIMAT0000402 Dap160 mRNA 35378 Prediction 0.2202 Dap160 RAID03702160 dme-miR-13a-3p miRNA MIMAT0000118 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID03798563 dme-miR-311-3p miRNA MIMAT0000403 Dap160 mRNA 35378 Prediction 0.2202 Dap160 RAID03977576 dme-miR-13b-3p miRNA MIMAT0000119 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID04002807 dme-miR-1000-5p miRNA MIMAT0005520 Dap160 mRNA 35378 Prediction 0.1828 Dap160 RAID04025245 dme-miR-281-2-5p miRNA MIMAT0000349 Dap160 mRNA 35378 Prediction 0.2202 Dap160 RAID04063566 dme-miR-304-5p miRNA MIMAT0000390 Dap160 mRNA 35378 Prediction 0.1828