DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005491 dme-miR-975 40111 Chd3 uauguccuacauccUUCACAAAu |||||||| auucuuaguaauuuAAGUGUUUa 2 10 229 251 [dm3:3L:19443256-19443278:+] 0.4854 145 7 -10.32 -1.3065 MIMAT0005502 dme-miR-985 40111 Chd3 acGGGCUGGUAACCUUGUAAac ::| |:|||| |||||| uaUUCUAUCAUU--AACAUUcu 3 21 214 233 [dm3:3L:19443241-19443260:+] 0.4600 137 0 -9.57 -0.1064 MIMAT0005026 dme-miR-1013 40111 Chd3 gcucaagcCGUAUGAAAAua |: ||||||| auuuauaaGUUUACUUUUca 3 13 66 85 [dm3:3L:19443093-19443112:+] 0.5171 128 0 -4.60 -0.1105 MIMAT0011784 dme-miR-2279* 40111 Chd3 uuAAAGUGUGU-GUCUAUAA-AUu ||||:| || :| ||||| || uuUUUCGCCCAGUAAAUAUUCUAu 2 21 198 221 [dm3:3L:19443225-19443248:+] 0.4453 131 0 -8.44 -0.9761 MIMAT0011784 dme-miR-2279* 40111 Chd3 uuaaagugugugucuAUAAAUu |||||| uuauguuugucaaauUAUUUAa 2 8 253 274 [dm3:3L:19443280-19443301:+] 0.4854 120 6 -3.82 -0.3534 MIMAT0011787 dme-miR-2280* 40111 Chd3 agucaaucgaaccuUCAUUUAa ||||||| acaauuuuucgcccAGUAAAUa 2 9 194 215 [dm3:3L:19443221-19443242:+] 0.4453 140 7 -4.18 -0.7500 MIMAT0012199 dme-miR-2492 40111 Chd3 aaACUUUCGAGAGCU--GUUUUGUa | ||| : :|: | :|||||| ugUCAAAUUAUUUAAUUUAAAACAg 2 22 260 284 [dm3:3L:19443287-19443311:+] 0.4854 132 6 -4.65 -0.1497 MIMAT0000108 dme-miR-3 40111 Chd3 acucUGUGUGAAA-CGGGUCAcu ||| :||| ||||||| uguaACAAUUUUUCGCCCAGUaa 3 19 190 212 [dm3:3L:19443217-19443239:+] 0.4453 141 0 -16.39 -0.1433 MIMAT0000114 dme-miR-9a 40111 Chd3 aguAUGUCGAUCUAUUGGUUUcu |: | | ||| ||||||| auuUGAAAC-AGA-AACCAAAuu 3 21 41 61 [dm3:3L:19443068-19443088:+] 0.5171 132 0 -9.02 -0.1059 MIMAT0012531 dme-miR-10-3p 40111 Chd3 uuUGGAGAGAUCUUGGCUUAAAc || || | || :|||||| guACAAAUCAACAAAUGAAUUUg 2 22 23 45 [dm3:3L:19443050-19443072:+] 0.4988 141 6 -10.78 -0.1102 MIMAT0000319 dme-miR-263a 40111 Chd3 cacUUAAGAAGGUCACGGUAAUUg || | |||:| :|||||| aguAAAUAUUCUA---UCAUUAAc 2 22 208 228 [dm3:3L:19443235-19443255:+] 0.4586 137 6 -11.52 -0.1352 MIMAT0000348 dme-miR-284 40111 Chd3 guuaacgaccuuaguucaacgaCUGAAGu |||||| auauauaguuauuuugcuccaaGACUUCa 2 8 112 140 [dm3:3L:19443139-19443167:+] 0.4749 120 6 -15.86 -0.1338 MIMAT0000361 dme-miR-87 40111 Chd3 guguggacuuUAAAACGAGuu ||||||||| auauauaguuAUUUUGCUCca 3 12 112 132 [dm3:3L:19443139-19443159:+] 0.4749 135 0 -13.39 -0.1540 MIMAT0000395 dme-miR-9b 40111 Chd3 guAUGUCGAUUUU---AGUGGUUUcu |: | :|:||| |||||| aaUGAAUUUGAAACAGAAACCAAAuu 3 22 36 61 [dm3:3L:19443063-19443088:+] 0.5171 124 0 -8.32 -0.1048 MIMAT0000401 dme-miR-309 40111 Chd3 auccUGUUUGAAA-UGGGUCAcg |||| :||| :|||||| uguaACAAUUUUUCGCCCAGUaa 3 19 190 212 [dm3:3L:19443217-19443239:+] 0.4453 145 0 -15.43 -0.1405 MIMAT0000407 dme-miR-315 40111 Chd3 cgaaaGACUCGUUGUUAGUUuu :||:|:| |||||| cgccaUUGGGUACAAAUCAAca 3 18 14 35 [dm3:3L:19443041-19443062:+] 0.4988 137 0 -11.15 -0.1337 MIMAT0000410 dme-miR-318 40111 Chd3 acucuauuuguuuCGGGUCAcu ||||||| guaacaauuuuucGCCCAGUaa 3 10 191 212 [dm3:3L:19443218-19443239:+] 0.4453 125 0 -13.25 -0.1433 MIMAT0005478 dme-miR-964 40111 Chd3 uucaauucgaggggAUAAGAUu ||||||| uuucgcccaguaaaUAUUCUAu 2 9 200 221 [dm3:3L:19443227-19443248:+] 0.4453 140 7 -10.88 -1.0365 MIMAT0005496 dme-miR-980 40111 Chd3 auUCGGGAAGUGUUC-CGUCGAu || |:| | :||| |||||| caAG-CUUGCCUAAGCGCAGCUa 2 21 84 105 [dm3:3L:19443111-19443132:+] 0.4960 126 6 -20.70 -0.9565 MIMAT0005501 dme-miR-927 40111 Chd3 ccauuucgCAUCCUUAAGAUuu ||| |||||| uucgcccaGUAAAUAUUCUAuc 3 15 201 222 [dm3:3L:19443228-19443249:+] 0.4586 126 0 -5.52 -0.1312 MIMAT0005504 dme-miR-987 40111 Chd3 guAGUUAGGUCUGAUAAAUGAAAu |:|||::| | :|||||||| ugUUAAUUUAUA-AGUUUACUUUu 2 23 61 83 [dm3:3L:19443088-19443110:+] 0.5171 164 7 -11.60 -0.9637 MIMAT0005504 dme-miR-987 40111 Chd3 guaGUUA-GGUC-UGAUAAAUGAAAu :||| ||| |||| ||||||| aagUAAUAGCAGUACUA-UUACUUUu 2 22 156 180 [dm3:3L:19443183-19443207:+] 0.4559 161 7 -15.01 -0.7761 MIMAT0005019 dme-miR-1006 40111 Chd3 gauacUUA-UUCUUUAGCUUAAAu ||| || ||| :|||||| guacaAAUCAACAAA-UGAAUUUg 2 19 23 45 [dm3:3L:19443050-19443072:+] 0.4988 143 6 -6.43 -0.1030 MIMAT0005027 dme-miR-1014 40111 Chd3 gacGUUUACU--UUUACUUAAAa ||||| | |||||||||| guaCAAAUCAACAAAUGAAUUUg 2 19 23 45 [dm3:3L:19443050-19443072:+] 0.4988 169 7 -10.74 -1.0030

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Chd3 RAID00228256 dme-miR-1014-3p miRNA MIMAT0005027 Chd3 mRNA 40111 Prediction 0.2202 Chd3 RAID00407162 dme-miR-1006-3p miRNA MIMAT0005019 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID00415678 dme-miR-987-5p miRNA MIMAT0005504 Chd3 mRNA 40111 Prediction 0.2202 Chd3 RAID00697942 dme-miR-964-5p miRNA MIMAT0005478 Chd3 mRNA 40111 Prediction 0.2202 Chd3 RAID00803339 dme-miR-318-3p miRNA MIMAT0000410 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID01208825 dme-miR-87-3p miRNA MIMAT0000361 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID01211215 dme-miR-9b-5p miRNA MIMAT0000395 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID01400008 dme-miR-315-5p miRNA MIMAT0000407 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID01702715 dme-miR-284-3p miRNA MIMAT0000348 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID01811189 dme-miR-309-3p miRNA MIMAT0000401 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID01887313 dme-miR-263a-5p miRNA MIMAT0000319 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID02931185 dme-miR-10-3p miRNA MIMAT0012531 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID02985189 dme-miR-980-3p miRNA MIMAT0005496 Chd3 mRNA 40111 Prediction 0.2202 Chd3 RAID03277418 dme-miR-927-5p miRNA MIMAT0005501 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID03297906 dme-miR-975-5p miRNA MIMAT0005491 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID03377745 dme-miR-9a-5p miRNA MIMAT0000114 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID03385093 dme-miR-305-5p miRNA MIMAT0000391 Chd3 mRNA 40111 Prediction 0.1828 Chd3 RAID03720879 dme-miR-3-3p miRNA MIMAT0000108 Chd3 mRNA 40111 Prediction 0.1828