DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 42504 slmb auAGUAAAGUAUAC-GUUGCAUUUAUGu |::| : || | :||| |||||| aaUUGUAAUCUAAGUUAACCGAAAUACa 2 26 906 933 [dm3:3R:16945509-16945536:-] 0.5696 128 6 -8.67 -0.1308 MIMAT0000364 dme-miR-289 42504 slmb ucagcguccgaggugaaUUUAUAAAu |||||||| uaaguuaaccgaaauacAAAUAUUUu 2 10 916 941 [dm3:3R:16945501-16945526:-] 0.5696 145 7 -7.63 -1.0642 MIMAT0005475 dme-miR-961 42504 slmb uagAGUCAAUGACCACUAGUUu |: |||: | |||||||| ccgUUCGUUGAUUGUGAUCAAu 2 20 1168 1189 [dm3:3R:16945253-16945274:-] 0.5716 163 7 -16.59 -0.3056 MIMAT0005488 dme-miR-972 42504 slmb cggaUUUAUAAGCAUAACAUGu ||||: : ||||||| uugaAAAUGGAUCCAUUGUACu 2 19 1023 1044 [dm3:3R:16945398-16945419:-] 0.5153 150 7 -9.34 -0.2575 MIMAT0005491 dme-miR-975 42504 slmb uauguccuacauccUUCACAAAu |||||||| uugggcguuauuuuAAGUGUUUc 2 10 650 672 [dm3:3R:16945770-16945792:-] 0.5682 145 7 -10.95 -0.9728 MIMAT0005509 dme-miR-991 42504 slmb ugAAAGGU-UUG-AUGUUGAAAUu | | || ||| | : |||||| uaUGUACAUAACGUUUUACUUUAa 2 21 1284 1307 [dm3:3R:16945135-16945158:-] 0.5716 122 6 -7.83 -0.1050 MIMAT0005510 dme-miR-992 42504 slmb gaAUC-AUGGUCU---UUGCACAUGa |:| |:::||: : ||||||| acUGGCUGUUAGGUUUGUCGUGUACg 2 21 492 517 [dm3:3R:16945925-16945950:-] 0.5682 142 7 -18.36 -0.6663 MIMAT0005022 dme-miR-1009 42504 slmb gaCUUUACAUUGUUAAAAACUCu || : | :|::| ||||||| acGACGAG-GAUGA-UUUUGAGg 2 22 80 100 [dm3:3R:16946342-16946362:-] 0.6615 145 7 -9.52 -0.3637 MIMAT0005028 dme-miR-1015 42504 slmb gacgUUCUC-UCUACAGGGUCCu || || | || ||||||| agaaAAUAGCAAAU-UCCCAGGc 2 19 1115 1136 [dm3:3R:16945306-16945327:-] 0.5716 151 7 -14.79 -0.9669 MIMAT0011784 dme-miR-2279* 42504 slmb uuaaagUGUGUGUCUAUAAAuu | |:||| |||||| uaaccgAAAUACAAAUAUUUua 3 17 921 942 [dm3:3R:16945500-16945521:-] 0.5696 140 0 -7.60 -0.1455 MIMAT0011787 dme-miR-2280* 42504 slmb aguCAAUCGAACCUUCAUUUAa |||| :| |||||||| uguGUUAAUUGUAAAGUAAAUc 2 20 863 884 [dm3:3R:16945558-16945579:-] 0.5596 159 7 -9.12 -0.8919 MIMAT0011787 dme-miR-2280* 42504 slmb agucaaucgaaccUUCAUUUaa ||||||| ggaaggacagaaaAAGUAAAau 3 10 547 568 [dm3:3R:16945874-16945895:-] 0.5682 125 0 -5.21 -0.1208 MIMAT0011791 dme-miR-2283 42504 slmb uaAC-AGCAUAAG-UA-CUAUAAAAg || |:||: || || |||||||| guUGAUUGUGAUCAAUGGAUAUUUUa 2 22 1174 1199 [dm3:3R:16945243-16945268:-] 0.5716 162 7 -15.31 -0.7233 MIMAT0011791 dme-miR-2283 42504 slmb uaacagcaUAAGUACUAUAAAAg || || ||||||| uaaccgaaAUACA-AAUAUUUUa 2 16 921 942 [dm3:3R:16945500-16945521:-] 0.5696 145 7 -3.65 -1.2038 MIMAT0012194 dme-miR-307-as* 42504 slmb gguaguguuggaggaACUCACu |||||| gauuaugaugaauaaUGAGUGa 2 8 247 268 [dm3:3R:16946174-16946195:-] 0.5682 120 6 -11.47 -0.1694 MIMAT0012196 dme-miR-2489 42504 slmb ugACGUUUA--U-GUUGUAUGUUau | :||:| | |:| |||||| aaUCUAAGUUAACCGAAAUACAAau 3 21 912 936 [dm3:3R:16945506-16945530:-] 0.5696 130 0 -6.45 -0.1090 MIMAT0012201 dme-miR-2493 42504 slmb ugcgGAGCGUGUUUAUGUGUGCc | | |||| | ||||||| uccaCACACACACACACACACGa 2 20 378 400 [dm3:3R:16946042-16946064:-] 0.5682 163 7 -17.87 -0.8615 MIMAT0012206 dme-miR-2496* 42504 slmb augcuaccggagagugUGUGCGUg ||||||| aauuguguaaagaaggACACGCAg 2 9 954 977 [dm3:3R:16945465-16945488:-] 0.5424 140 7 -12.18 -0.1617 MIMAT0012208 dme-miR-2497* 42504 slmb uuGUUGAUGUAAAACGUUACGA-AUg :|| | :| || ||||||| || ugUAAGU-UAAGUUCCAAUGCUAUAc 2 24 1217 1241 [dm3:3R:16945201-16945225:-] 0.5716 125 0 -11.97 -0.4821 MIMAT0000334 dme-miR-92a 42504 slmb uauccggcccuguucACGUUAc |||||| auggauccauuguacUGCAAUa 2 8 1029 1050 [dm3:3R:16945392-16945413:-] 0.5153 120 6 -6.45 -0.1201 MIMAT0000338 dme-miR-277 42504 slmb acAGCAUGGU-C-UAUCACG-UAAAu |: |||:| | :|| ||| |||| uaUUUUACUAUGUGUAUUGCUAUUUg 2 22 1193 1218 [dm3:3R:16945224-16945249:-] 0.5716 123 0 -8.39 -1.0689 MIMAT0000347 dme-miR-283 42504 slmb ucuUAAUGGUCGACUAUAAAu :| |:|| : ||||||| auuGUGAUCAAUGGAUAUUUu 2 19 1178 1198 [dm3:3R:16945244-16945264:-] 0.5716 154 7 -8.64 -0.5496 MIMAT0000347 dme-miR-283 42504 slmb ucUUAAUGGUCGACUAUAAAu | |||: || ||||||| ccAUUUAU--GCAGAUAUUUc 2 20 468 486 [dm3:3R:16945956-16945974:-] 0.5682 152 7 -5.93 -0.3235 MIMAT0000358 dme-miR-92b 42504 slmb cguccggcccugaucACGUUAa |||||| auggauccauuguacUGCAAUa 2 8 1029 1050 [dm3:3R:16945392-16945413:-] 0.5153 120 6 -7.73 -0.1201 MIMAT0000402 dme-miR-310 42504 slmb uuuccggcccuucacACGUUAu |||||| auggauccauuguacUGCAAUa 2 8 1029 1050 [dm3:3R:16945392-16945413:-] 0.5153 120 6 -8.69 -0.1201 MIMAT0000403 dme-miR-311 42504 slmb aguccggccacuuacACGUUAu |||||| auggauccauuguacUGCAAUa 2 8 1029 1050 [dm3:3R:16945392-16945413:-] 0.5153 120 6 -9.80 -0.1166 MIMAT0000404 dme-miR-312 42504 slmb aguccggcagaguucACGUUAu |||||| auggauccauuguacUGCAAUa 2 8 1029 1050 [dm3:3R:16945392-16945413:-] 0.5153 120 6 -8.47 -0.1177 MIMAT0000405 dme-miR-313 42504 slmb agcccgacacuuuucACGUUAu |||||| auggauccauuguacUGCAAUa 2 8 1029 1050 [dm3:3R:16945392-16945413:-] 0.5153 120 6 -9.72 -0.1177 MIMAT0000413 dme-miR-iab-4-3p 42504 slmb caaugcaUAUGACUUCCAUAUGGc ||:| |:| ||||||| acaauaaAUGCAGGA-GUAUACCa 2 18 448 470 [dm3:3R:16945972-16945994:-] 0.5682 155 7 -13.34 -0.9447 MIMAT0005467 dme-miR-190 42504 slmb guUGGUUCUUAUAGUU-UGUAU-AGa | ||| ||||| || ||||| || uuAACAAAAAUAUGAACACAUACUCc 2 23 1316 1341 [dm3:3R:16945101-16945126:-] 0.5716 141 0 -11.32 -0.6674 MIMAT0005479 dme-miR-932 42504 slmb gaCGUUAC--GUGAUG-CCUU-AACu |||:|| ::| || |||| ||| caGCAGUGUCUGCAACUGGAAGUUGc 2 21 975 1000 [dm3:3R:16945442-16945467:-] 0.5153 122 0 -17.81 -0.1172 MIMAT0005496 dme-miR-980 42504 slmb auucGGGAAGUGUU-CCGUCGAu :::| ::||| ||||||| --caUUUUGUGCAACGGCAGCUg 2 19 1 21 [dm3:3R:16946421-16946441:-] 0.6615 153 7 -19.50 -0.2604 MIMAT0005496 dme-miR-980 42504 slmb auucgggaaguguUCCGUCGAu |||||||| aaguaucgcguuuAGGCAGCUg 2 10 689 710 [dm3:3R:16945732-16945753:-] 0.5682 145 7 -22.52 -0.2412 MIMAT0005504 dme-miR-987 42504 slmb guaguUAGGU-CUGAUAAAUGAAAu :| || || |||||||| uguauGUACAUAACGUUUUACUUUa 2 20 1282 1306 [dm3:3R:16945136-16945160:-] 0.5716 150 7 -8.88 -1.1293 MIMAT0005506 dme-miR-989 42504 slmb caAGGUGAUGCAGUGUAG-UGu | |:| | ||:||||| || gcUGCGCGA-GUUACAUCUACa 2 20 18 38 [dm3:3R:16946404-16946424:-] 0.6615 121 0 -17.71 -0.7145 MIMAT0005507 dme-miR-137 42504 slmb gaugcACAU-AAGA-GUUCGUUau || | || | |||||| uuaaaUGAAGUUAUAAAAGCAAac 3 18 422 445 [dm3:3R:16945997-16946020:-] 0.5682 123 0 -6.28 -0.1452 MIMAT0005511 dme-miR-929 42504 slmb guUAGACUGAGGCAAUC-CCUc || | | |:||||| ||| uuAUGUAAAACUGUUAGUGGAa 2 20 1345 1366 [dm3:3R:16945076-16945097:-] 0.5716 123 0 -13.32 -0.6953 MIMAT0005516 dme-miR-252 42504 slmb gaggacgcCGUGAUCAU-GAAUc || |||||| |||| aaaucuaaGC-CUAGUAUCUUAu 2 15 880 901 [dm3:3R:16945541-16945562:-] 0.5696 120 0 -12.64 -0.4983 MIMAT0005519 dme-miR-999 42504 slmb ucuGUGUCAGAAUGUCAAUUGu :::| || || ||||||| aauUGUAAUC-UA-AGUUAACc 2 20 906 925 [dm3:3R:16945517-16945536:-] 0.5696 147 7 -8.13 -0.8915 MIMAT0005519 dme-miR-999 42504 slmb ucugugucagaauguCAAUUGu |||||| uacuuuaacaaaaguGUUAACa 2 8 1300 1321 [dm3:3R:16945121-16945142:-] 0.5716 120 6 -9.66 -0.1357 MIMAT0005520 dme-miR-1000 42504 slmb ugacgacacuguccUGUUAUa |||||| auaaaagcaaacaaACAAUAa 2 8 434 454 [dm3:3R:16945988-16946008:-] 0.5682 120 6 -5.67 -0.1130 MIMAT0005016 dme-miR-1003 42504 slmb gacacuuaUACAUUUAC-ACUCu || ||:||| |||| ggauuucgAUAUAGAUGUUGAGa 2 15 216 238 [dm3:3R:16946204-16946226:-] 0.5525 122 0 -11.50 -1.1062 MIMAT0005027 dme-miR-1014 42504 slmb gacGUUUACUUUUACUUAAaa || || || ||||||| aacCACAU-AAUAUGAAUUaa 3 19 406 425 [dm3:3R:16946017-16946036:-] 0.5682 140 0 -4.21 -0.1797

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score slmb RAID00082973 dme-miR-310-3p miRNA MIMAT0000402 slmb mRNA 42504 Prediction 0.2202 slmb RAID00426410 dme-miR-190-5p miRNA MIMAT0005467 slmb mRNA 42504 Prediction 0.1828 slmb RAID00460642 dme-mir-2a-2 miRNA MI0000118 slmb mRNA 42504 Prediction 0.1828 slmb RAID00591489 dme-miR-92b-3p miRNA MIMAT0000358 slmb mRNA 42504 Prediction 0.2381 slmb RAID01182021 dme-miR-252-5p miRNA MIMAT0005516 slmb mRNA 42504 Prediction 0.1828 slmb RAID01187437 dme-miR-932-5p miRNA MIMAT0005479 slmb mRNA 42504 Prediction 0.2202 slmb RAID01324915 dme-miR-991-3p miRNA MIMAT0005509 slmb mRNA 42504 Prediction 0.1828 slmb RAID01326732 dme-miR-989-3p miRNA MIMAT0005506 slmb mRNA 42504 Prediction 0.1828 slmb RAID01374200 dme-miR-137-3p miRNA MIMAT0005507 slmb mRNA 42504 Prediction 0.1828 slmb RAID01395708 dme-miR-1000-5p miRNA MIMAT0005520 slmb mRNA 42504 Prediction 0.2202 slmb RAID01605352 dme-miR-313-3p miRNA MIMAT0000405 slmb mRNA 42504 Prediction 0.2202 slmb RAID01855554 dme-miR-283-5p miRNA MIMAT0000347 slmb mRNA 42504 Prediction 0.1828 slmb RAID01865115 dme-miR-1003-3p miRNA MIMAT0005016 slmb mRNA 42504 Prediction 0.1828 slmb RAID01876067 dme-miR-980-3p miRNA MIMAT0005496 slmb mRNA 42504 Prediction 0.2381 slmb RAID01982426 dme-miR-929-3p miRNA MIMAT0005511 slmb mRNA 42504 Prediction 0.1828 slmb RAID02020357 dme-miR-972-3p miRNA MIMAT0005488 slmb mRNA 42504 Prediction 0.1828 slmb RAID02044382 dme-miR-2c-3p miRNA MIMAT0000411 slmb mRNA 42504 Prediction 0.1828 slmb RAID02157642 dme-miR-961-5p miRNA MIMAT0005475 slmb mRNA 42504 Prediction 0.1828 slmb RAID02220704 dme-miR-927-5p miRNA MIMAT0005501 slmb mRNA 42504 Prediction 0.1828 slmb RAID02223925 dme-miR-975-5p miRNA MIMAT0005491 slmb mRNA 42504 Prediction 0.1828 slmb RAID02296082 dme-mir-iab-4 miRNA MI0000432 slmb mRNA 42504 Prediction 0.1828 slmb RAID02390354 dme-miR-1015-3p miRNA MIMAT0005028 slmb mRNA 42504 Prediction 0.1828 slmb RAID02465463 dme-miR-312-3p miRNA MIMAT0000404 slmb mRNA 42504 Prediction 0.2202 slmb RAID02801867 dme-miR-992-3p miRNA MIMAT0005510 slmb mRNA 42504 Prediction 0.1828 slmb RAID02804074 dme-miR-iab-4-3p miRNA MIMAT0000413 slmb mRNA 42504 Prediction 0.1828 slmb RAID02872504 dme-miR-1-3p miRNA MIMAT0000105 slmb mRNA 42504 Prediction 0.1828 slmb RAID03173254 dme-miR-1009-3p miRNA MIMAT0005022 slmb mRNA 42504 Prediction 0.1828 slmb RAID03240269 dme-miR-1014-3p miRNA MIMAT0005027 slmb mRNA 42504 Prediction 0.1828 slmb RAID03322260 dme-miR-311-3p miRNA MIMAT0000403 slmb mRNA 42504 Prediction 0.2202 slmb RAID03410720 dme-miR-987-5p miRNA MIMAT0005504 slmb mRNA 42504 Prediction 0.2202 slmb RAID03652220 dme-miR-277-3p miRNA MIMAT0000338 slmb mRNA 42504 Prediction 0.1828 slmb RAID03678531 dme-miR-92a-3p miRNA MIMAT0000334 slmb mRNA 42504 Prediction 0.2202 slmb RAID03902290 dme-miR-999-3p miRNA MIMAT0005519 slmb mRNA 42504 Prediction 0.2202