DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 37542 ari-2 ucagcguccgaggugaauuUAUAAAu |||||| uuuaaauuaaauuauacacAUAUUUa 2 8 114 139 [dm3:2R:18104011-18104036:+] 0.6092 120 6 -6.17 -0.1389 MIMAT0005464 dme-miR-iab-4as-3p 37542 ari-2 auuUGCAUAUGACU-UACAUAGg || |||:| | ||||||| uauACACAUAUUUACAUGUAUCc 2 20 126 148 [dm3:2R:18104023-18104045:+] 0.6092 158 7 -13.56 -0.8614 MIMAT0005482 dme-miR-967 37542 ari-2 gcgAAGAGGUCUCCAUAGAGa ||| | | ||||||| guaUUCGCAAUCUGUAUCUCg 2 19 645 665 [dm3:2R:18104542-18104562:+] 0.5588 150 7 -13.28 -0.6784 MIMAT0005509 dme-miR-991 37542 ari-2 ugaaaggUUUGAUGUUGAAAUu ||||| ||||||| aacuauaAAACU--AACUUUAa 2 16 395 414 [dm3:2R:18104292-18104311:+] 0.5588 152 7 -11.50 -1.2102 MIMAT0011784 dme-miR-2279* 37542 ari-2 uuaaaguGUGUGUCUAUAAAUu :|:||| ||||||| auuaaauUAUACACAUAUUUAc 2 16 119 140 [dm3:2R:18104016-18104037:+] 0.6092 159 7 -11.02 -0.7212 MIMAT0011785 dme-miR-2279 37542 ari-2 uuuauUUAUAGAAGCGCACUUu | || | |||||||| cuuguAUUAGCCCCGCGUGAAc 2 18 615 636 [dm3:2R:18104512-18104533:+] 0.5588 153 7 -13.16 -0.1833 MIMAT0011787 dme-miR-2280* 37542 ari-2 agUCAAUCGA--ACCUUCAU-UUAa ||| : || | |||||| ||| auAGUCGACUACUCGAAGUAUAAUu 2 21 237 261 [dm3:2R:18104134-18104158:+] 0.6874 123 0 -8.87 -0.9537 MIMAT0012196 dme-miR-2489 37542 ari-2 ugacguUUAUGUUGUAUGUUau | || :|:|||||| auuuacACUA-GAUAUACAAcu 3 17 852 872 [dm3:2R:18104749-18104769:+] 0.7013 130 0 -8.16 -0.4002 MIMAT0012196 dme-miR-2489 37542 ari-2 ugACGUUU-AUGUUGUAUGU-UAu | :||| || | :||||| || uaUUUAAAUUAAAUUAUACACAUa 2 21 112 135 [dm3:2R:18104009-18104032:+] 0.6092 123 0 -6.45 -1.3087 MIMAT0012204 dme-miR-2495 37542 ari-2 ucAGUCGGGUUA--ACUUCACGgu |:| |:||| | |||||| aaUUAAACUAAUAAUCAAGUGCau 3 21 187 210 [dm3:2R:18104084-18104107:+] 0.6428 135 0 -11.03 -0.1426 MIMAT0012208 dme-miR-2497* 37542 ari-2 uugUUGAUGUAAAACGU---UACGAAUg :|:|||: | ||:| ||||||| uagGAUUACGCUAUGUAUGUAUGCUUAu 2 23 805 832 [dm3:2R:18104702-18104729:+] 0.7013 161 7 -16.11 -1.0801 MIMAT0000110 dme-miR-5 37542 ari-2 guauaguguuGCUA--GCAAGGAAa |||| |||||||| uccccgucccCGAUCCCGUUCCUUu 2 14 726 750 [dm3:2R:18104623-18104647:+] 0.4847 152 7 -17.97 -0.2450 MIMAT0012531 dme-miR-10-3p 37542 ari-2 uuuggaGAGAUCUUGGCUUAAAc :| |: :||:|||||| guaugcUUAUGCGACUGAAUUUg 2 18 823 845 [dm3:2R:18104720-18104742:+] 0.7013 141 6 -15.90 -0.1853 MIMAT0000346 dme-miR-282 37542 ari-2 ugucuguuucggaucaucuccGAUCUAa |||||| ugaauuugaauuaaauuuacaCUAGAUa 2 8 838 865 [dm3:2R:18104735-18104762:+] 0.7013 120 6 -10.86 -0.5709 MIMAT0000347 dme-miR-283 37542 ari-2 ucUUAAUGGUCGACUAUAAAu ||||| :| | |||||| uaAAUUA-UA-CACAUAUUUa 2 20 121 139 [dm3:2R:18104018-18104036:+] 0.6092 123 6 -5.55 -0.1389 MIMAT0000348 dme-miR-284 37542 ari-2 guUAACGACCUUAGUUCAACGACUG-AAGu ||| || || ||||| |||| ||| uaAUUACU---AU--AGUUG-UGACAUUCg 2 28 257 280 [dm3:2R:18104154-18104177:+] 0.6231 122 0 -14.36 -1.0390 MIMAT0000362 dme-miR-263b 37542 ari-2 cacuuaagAGGGUCA-CGGUUc |::|||| ||||| cagacgcaUUUCAGUGGCCAAg 2 14 441 462 [dm3:2R:18104338-18104359:+] 0.5588 121 0 -19.67 -0.4239 MIMAT0000365 dme-bantam 37542 ari-2 uuAG-UCGAAAGUUUU--AC-UAGAGu || ||: |||: || || ||||| caUCAAGUAUUCGCAAUCUGUAUCUCg 2 22 639 665 [dm3:2R:18104536-18104562:+] 0.5588 123 0 -13.78 -0.8050 MIMAT0000398 dme-miR-307 37542 ari-2 gagugaguuccucCAACACu |||||| uauaauuacuauaGUUGUGa 2 8 255 274 [dm3:2R:18104152-18104171:+] 0.6231 120 6 -11.87 -0.1306 MIMAT0000404 dme-miR-312 37542 ari-2 aguccggcagAGUUCACGU-UAu ||||||||| || aaacuaauaaUCAAGUGCAUAUa 2 13 191 213 [dm3:2R:18104088-18104110:+] 0.6428 124 0 -13.83 -1.1436 MIMAT0000406 dme-miR-314 37542 ari-2 ggCUUGAAUAACC----GAGCUUau ||:| || | | |||||| uaGAGCAUAGUCGACUACUCGAAgu 3 20 231 255 [dm3:2R:18104128-18104152:+] 0.6819 126 0 -11.61 -0.1231 MIMAT0005469 dme-miR-956 37542 ari-2 uuaccuaaucucaccaGAGCUUu |||||| agagcauagucgacuaCUCGAAg 2 8 232 254 [dm3:2R:18104129-18104151:+] 0.6819 120 6 -14.47 -0.1167 MIMAT0005474 dme-miR-960 37542 ari-2 cgAUACGUUAGACCUUA-UGAGu |:|| ||: | ||| |||| guUGUGACAUUCGAAAUCACUCa 2 21 268 290 [dm3:2R:18104165-18104187:+] 0.5588 124 0 -13.54 -1.1187 MIMAT0005478 dme-miR-964 37542 ari-2 uucaauucgaggggAUAAGAUu ||||||| ugaaucauaaauuaUAUUCUAg 2 9 786 807 [dm3:2R:18104683-18104704:+] 0.7013 140 7 -7.59 -1.2025 MIMAT0005480 dme-miR-965 37542 ari-2 uuccccuuUUCGAUAUGCGAau |:| | |||||| uauauucuAGGAU-UACGCUau 3 15 798 818 [dm3:2R:18104695-18104715:+] 0.7013 124 0 -8.96 -0.1055 MIMAT0005480 dme-miR-965 37542 ari-2 uuccccuuuucgauaUGCGAAu |||||| cgcgacaguauagagACGCUUa 2 8 92 113 [dm3:2R:18103989-18104010:+] 0.6092 120 6 -10.45 -0.3615 MIMAT0005492 dme-miR-976 37542 ari-2 cguaacuACUAUUGAUUAG-GUu | :||||||||| || cuguaucUCGUAACUAAUCGCAg 2 16 656 678 [dm3:2R:18104553-18104575:+] 0.5588 127 0 -13.65 -0.6910 MIMAT0005501 dme-miR-927 37542 ari-2 ccaUUUCGCAUCCUUAAGAUUu ||| ||| |||||||| cagAAACAGUAACAAUUCUAAa 2 20 510 531 [dm3:2R:18104407-18104428:+] 0.5588 163 7 -10.69 -1.0918 MIMAT0005501 dme-miR-927 37542 ari-2 ccAUUUCGCA--UCCU-UAAGAUUu |:|| | | | | ||||||: gcUGAAUCAUAAAUUAUAUUCUAGg 2 21 784 808 [dm3:2R:18104681-18104705:+] 0.7013 126 0 -6.06 -0.3308 MIMAT0005507 dme-miR-137 37542 ari-2 gaugcacauaagAGUUCGUUAu ||||||||| uagcgccgcaagUCAAGCAAUu 2 11 536 557 [dm3:2R:18104433-18104454:+] 0.5588 150 7 -13.46 -0.5418 MIMAT0005512 dme-miR-993 37542 ari-2 ucuauggacaucuCUGCUCGAAg | ||||||| -------gcaaccGUCGAGCUUc 2 11 1 16 [dm3:2R:18103898-18103913:+] 0.6527 142 7 -17.11 -0.8583 MIMAT0005019 dme-miR-1006 37542 ari-2 gaUACUUAUUCUUUAGCUUAAAu ||| || | :| :|||||| guAUGCUUAUGCGACUGAAUUUg 2 22 823 845 [dm3:2R:18104720-18104742:+] 0.7013 145 6 -9.61 -0.1818 MIMAT0005027 dme-miR-1014 37542 ari-2 gaCGUUUACUUUUACUUAAAa || ||| :| ||||||| auGCUUAUGCGACUGAAUUUg 2 20 825 845 [dm3:2R:18104722-18104742:+] 0.7013 159 7 -11.00 -0.9617

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ari-2 RAID00118485 dme-miR-307a-3p miRNA MIMAT0000398 ari-2 mRNA 37542 Prediction 0.2202 ari-2 RAID00173567 dme-miR-5-5p miRNA MIMAT0000110 ari-2 mRNA 37542 Prediction 0.2202 ari-2 RAID00302366 dme-miR-991-3p miRNA MIMAT0005509 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID00556934 dme-miR-311-3p miRNA MIMAT0000403 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID00627088 dme-miR-993-3p miRNA MIMAT0005512 ari-2 mRNA 37542 Prediction 0.2202 ari-2 RAID00655386 dme-miR-283-5p miRNA MIMAT0000347 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID00734339 dme-bantam-3p miRNA MIMAT0000365 ari-2 mRNA 37542 Prediction 0.2202 ari-2 RAID00775025 dme-miR-263b-5p miRNA MIMAT0000362 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID00969846 dme-miR-313-3p miRNA MIMAT0000405 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID01007132 dme-miR-976-3p miRNA MIMAT0005492 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID01051445 dme-miR-92b-3p miRNA MIMAT0000358 ari-2 mRNA 37542 Prediction 0.2202 ari-2 RAID01199439 dme-miR-961-5p miRNA MIMAT0005475 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID01622690 dme-miR-137-3p miRNA MIMAT0005507 ari-2 mRNA 37542 Prediction 0.2202 ari-2 RAID01825647 dme-miR-965-3p miRNA MIMAT0005480 ari-2 mRNA 37542 Prediction 0.2381 ari-2 RAID01999535 dme-miR-1012-3p miRNA MIMAT0005025 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID02314488 dme-mir-iab-4 miRNA MI0000432 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID02353345 dme-miR-1014-3p miRNA MIMAT0005027 ari-2 mRNA 37542 Prediction 0.2381 ari-2 RAID02371177 dme-miR-967-5p miRNA MIMAT0005482 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID02413588 dme-miR-310-3p miRNA MIMAT0000402 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID02447249 dme-miR-282-5p miRNA MIMAT0000346 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID02536073 dme-miR-1006-3p miRNA MIMAT0005019 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID02766171 dme-miR-284-3p miRNA MIMAT0000348 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID02775965 dme-miR-927-5p miRNA MIMAT0005501 ari-2 mRNA 37542 Prediction 0.2202 ari-2 RAID02827650 dme-miR-312-3p miRNA MIMAT0000404 ari-2 mRNA 37542 Prediction 0.2202 ari-2 RAID02990885 dme-miR-960-5p miRNA MIMAT0005474 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID03134023 dme-miR-956-3p miRNA MIMAT0005469 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID03238799 dme-miR-314-3p miRNA MIMAT0000406 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID03539543 dme-mir-307a miRNA MI0000418 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID03816301 dme-miR-92a-3p miRNA MIMAT0000334 ari-2 mRNA 37542 Prediction 0.1828 ari-2 RAID03818834 dme-miR-964-5p miRNA MIMAT0005478 ari-2 mRNA 37542 Prediction 0.2202 ari-2 RAID03869118 dme-miR-10-3p miRNA MIMAT0012531 ari-2 mRNA 37542 Prediction 0.1828