DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 31110 CG32810 gccccGCUCUCUUACUAUUCc | | | |||||||| gauauCUAUAAUAUGAUAAGu 2 17 1155 1175 [dm3:X:1410578-1410598:+] 0.5847 148 7 -7.50 -0.9834 MIMAT0000343 dme-miR-280 31110 CG32810 auaguaaaguauacgUUGCAUUUAUGu ||: ||||||| cacacaacccuugaaAAUUUAAAUACc 2 13 17 43 [dm3:X:1409440-1409466:+] 0.5634 148 7 -5.18 -0.6764 MIMAT0000363 dme-miR-288 31110 CG32810 guACUUUAC--UUUA-GCUGUACUUu | | ||| ||:| | ||||||| uaUAAUAUGAUAAGUACUACAUGAAu 2 22 1161 1186 [dm3:X:1410584-1410609:+] 0.5847 155 7 -12.00 -0.9278 MIMAT0005488 dme-miR-972 31110 CG32810 cgGAUUUAUAAGCAUAACAUGu :|| |||| ||||||: uuUUAUAUAUGAUAAUUGUAUa 2 21 2059 2080 [dm3:X:1411482-1411503:+] 0.5343 140 0 -10.20 -0.1122 MIMAT0005509 dme-miR-991 31110 CG32810 ugaaagGUUUGAUGUUGAAAUu |:|| |||||||| gcaaggCGAAGAUCAACUUUAg 2 17 979 1000 [dm3:X:1410402-1410423:+] 0.5868 152 7 -12.76 -0.2730 MIMAT0005018 dme-miR-1005 31110 CG32810 gaCGC--UUAAUUUCUA--AGGUCu ||| ||||:||||| ||||| aaGCGAAAAUUGAAGAUGAUCCAGa 2 20 1233 1257 [dm3:X:1410656-1410680:+] 0.6580 126 0 -23.10 -0.7351 MIMAT0011784 dme-miR-2279* 31110 CG32810 uuAAAGUGUGUGUCUAUAAAUu | | |:| :: ||||||| uaUAUGAUAAUUGUAUAUUUAu 2 21 2064 2085 [dm3:X:1411487-1411508:+] 0.5282 148 7 -3.89 -0.7031 MIMAT0011788 dme-miR-2281* 31110 CG32810 aacGUAGACGUCGACGUCUAUUa |: | || | ||||||| acaCGGCAACAAGUACAGAUAAc 2 21 1473 1495 [dm3:X:1410896-1410918:+] 0.5733 148 7 -10.59 -0.5696 MIMAT0011789 dme-miR-2281 31110 CG32810 cguuaugacGUCUAUGUCUAu || :||||||| acacggcaaCAAGUACAGAUa 2 13 1473 1493 [dm3:X:1410896-1410916:+] 0.5733 148 7 -14.01 -0.4226 MIMAT0012196 dme-miR-2489 31110 CG32810 ugACGUUUAUGUUGUA-UGUUAu | ||:| :||::|| ||||| uuUACAGAAGCAGUAUGACAAUc 2 21 1839 1861 [dm3:X:1411262-1411284:+] 0.5526 132 0 -12.26 -0.2261 MIMAT0012196 dme-miR-2489 31110 CG32810 ugACGUUUAUGUUGUAU-GUUAu | | :|||| | ||| |||| gaUACCGAUACCA-AUACCAAUa 2 21 784 805 [dm3:X:1410207-1410228:+] 0.5113 122 0 -7.96 -0.1626 MIMAT0012203 dme-miR-2494 31110 CG32810 gaacauucACCUGUAAUGACCCUu |||:| |||||||| cgagccgcUGGGC--UACUGGGAc 2 17 568 589 [dm3:X:1409991-1410012:+] 0.5961 153 7 -18.12 -0.1681 MIMAT0012207 dme-miR-2496 31110 CG32810 auacgcacacacuCACGGGGCg |||||||| cuuuaaacagccuGUGCCCCGu 2 10 1569 1590 [dm3:X:1410992-1411013:+] 0.5733 145 7 -18.49 -0.1672 MIMAT0012208 dme-miR-2497* 31110 CG32810 uugUUGAUGUAAAACGUUACGAAUg :| ||:| || ||||||| auaGAGUAUAACUU---AUGCUUAc 2 23 1330 1351 [dm3:X:1410753-1410774:+] 0.6188 146 7 -12.92 -0.4159 MIMAT0000109 dme-miR-4 31110 CG32810 aguuaccaacAGAUCGAAAUa |: ||||||| uuuuacuaccUUGAGCUUUAu 2 12 946 966 [dm3:X:1410369-1410389:+] 0.5868 143 7 -7.89 -0.3922 MIMAT0000109 dme-miR-4 31110 CG32810 aguuaccaacagaUCGAAAUa ||||||| gcccgauaauauaAGCUUUAa 2 9 1937 1957 [dm3:X:1411360-1411380:+] 0.5343 140 7 -6.44 -0.9323 MIMAT0000335 dme-miR-219 31110 CG32810 guUCUUAACG-CAAACCUGUUAGu |||| || || | ||||||| acAGAA--GCAGUAU-GACAAUCa 2 22 1842 1862 [dm3:X:1411265-1411285:+] 0.5526 151 7 -14.58 -0.6440 MIMAT0000338 dme-miR-277 31110 CG32810 acaGCAUGGUCUA---UC-ACGUAAAu || ||:||:| || ||||||| uacCGCACUAGGUUCGAGCUGCAUUUa 2 21 744 770 [dm3:X:1410167-1410193:+] 0.6126 158 7 -19.59 -0.1323 MIMAT0000352 dme-miR-79 31110 CG32810 uacgaaaCCAUUAGA-UCGAAAu | |||| | |||||| gaagcccGAUAAUAUAAGCUUUa 2 16 1934 1956 [dm3:X:1411357-1411379:+] 0.5343 123 6 -9.09 -0.7071 MIMAT0000355 dme-miR-210 31110 CG32810 aucggcGACAGU--GUGCGUGUu :| ||| ||||||| ccgggaUUAUCAAGGACGCACAa 2 16 1908 1930 [dm3:X:1411331-1411353:+] 0.5343 142 7 -17.46 -0.1885 MIMAT0000409 dme-miR-317 31110 CG32810 ugACCUAUGGUGGU-CG-ACACAAGu || :|:| : |: || ||||||| agUGUGUGCGGGCGUGCAUGUGUUCa 2 23 348 373 [dm3:X:1409771-1409796:+] 0.5489 152 7 -21.44 -0.2021 MIMAT0005477 dme-miR-963 31110 CG32810 cuuugUUGGACUAUAA--AUGGAACa ::|| |:| || ||||||| guguaGGCCCGGUUUUACUACCUUGa 2 20 934 959 [dm3:X:1410357-1410382:+] 0.5868 154 7 -14.30 -0.4568 MIMAT0005478 dme-miR-964 31110 CG32810 uucaaUUCG-AGGGGAU-AAGAUu |||| |:|::|| ||||| uucaaAAGCGUUCUUUACUUCUAa 2 18 2011 2034 [dm3:X:1411434-1411457:+] 0.5343 128 0 -15.16 -0.9599 MIMAT0005480 dme-miR-965 31110 CG32810 uuccCCUUUUCGAUAUGCGAAu ||:|:| | ||||||| cgcaGGGAGA-C--UACGCUUc 2 19 251 269 [dm3:X:1409674-1409692:+] 0.5489 145 7 -15.36 -0.1066 MIMAT0005487 dme-miR-971 31110 CG32810 agUGACAUUCUUCAUUGUGGUu || | | | ||||||| ccACAGCCACAUCAAACACCAc 2 21 149 170 [dm3:X:1409572-1409593:+] 0.4809 144 7 -9.92 -0.1871 MIMAT0005487 dme-miR-971 31110 CG32810 agugacauuCUUCAUUGUGGUu || ||||||| agccacaccGACCCAACACCAa 2 14 96 117 [dm3:X:1409519-1409540:+] 0.4809 141 7 -12.29 -0.1168 MIMAT0005493 dme-miR-977 31110 CG32810 aaucuguugcacUUAUAGAGu |||||||: uucuuuacuucuAAUAUCUUa 2 10 2021 2041 [dm3:X:1411444-1411464:+] 0.5343 129 0 -7.55 -0.1357 MIMAT0005503 dme-miR-986 31110 CG32810 agucAGUGUUGCGAUAAGCUCu |||: :|| ||||||| cgcuUCAU-UUGC-AUUCGAGa 2 19 264 283 [dm3:X:1409687-1409706:+] 0.5489 146 7 -17.90 -0.2747 MIMAT0005512 dme-miR-993 31110 CG32810 ucuauggacaUCUCUGCUCGAAg || ||||||| aauuagacucAGUUUCGAGCUUa 2 14 457 479 [dm3:X:1409880-1409902:+] 0.5489 141 7 -13.17 -0.5192 MIMAT0005518 dme-miR-998 31110 CG32810 cuCGACUUAG---AGUACC-ACGAu ||||:||| || ||| |||| gaGCUGGAUCGGAUCCUGGAUGCUg 2 20 1674 1698 [dm3:X:1411097-1411121:+] 0.5500 130 0 -25.17 -0.1705 MIMAT0005519 dme-miR-999 31110 CG32810 ucugugucagaaUGUCAAUUGu | ||||||| ugcauucgagacAAAGUUAACa 2 11 273 294 [dm3:X:1409696-1409717:+] 0.5489 142 7 -13.57 -0.5942 MIMAT0005020 dme-miR-1007 31110 CG32810 acguuugucaauuAACUCGAAu |||||||| cgguuuuacuaccUUGAGCUUu 2 10 943 964 [dm3:X:1410366-1410387:+] 0.5868 145 7 -11.24 -0.5587 MIMAT0005024 dme-miR-1011 31110 CG32810 gacgcUCGCUA-AACU-UGGUUAUu | |||| || ||||||| ccgauACCGAUACCGAUACCAAUAc 2 19 776 800 [dm3:X:1410199-1410223:+] 0.5620 148 7 -14.05 -0.2253 MIMAT0005027 dme-miR-1014 31110 CG32810 gacGUUUACU-UUUACUUAAAa ::||| | :| ||||||| aauUGAAUCACGACUGAAUUUa 2 19 1007 1028 [dm3:X:1410430-1410451:+] 0.5858 153 7 -4.70 -0.4968 MIMAT0005030 dme-miR-1017 31110 CG32810 ccuacucaaacccAUCUCGAAAg | ||||||| cgguuuuacuaccUUGAGCUUUa 2 11 943 965 [dm3:X:1410366-1410388:+] 0.5868 142 7 -10.08 -0.9353

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score inc RAID00758396 dme-miR-137-3p miRNA MIMAT0005507 inc mRNA 31110 Prediction 0.1828 inc RAID00852918 dme-miR-210-3p miRNA MIMAT0000355 inc mRNA 31110 Prediction 0.1828 inc RAID01568875 dme-miR-972-3p miRNA MIMAT0005488 inc mRNA 31110 Prediction 0.1828 inc RAID01631487 dme-miR-977-3p miRNA MIMAT0005493 inc mRNA 31110 Prediction 0.1828 inc RAID01681553 dme-miR-991-3p miRNA MIMAT0005509 inc mRNA 31110 Prediction 0.1828 inc RAID01686199 dme-miR-927-5p miRNA MIMAT0005501 inc mRNA 31110 Prediction 0.1828 inc RAID01952320 dme-miR-4-3p miRNA MIMAT0000109 inc mRNA 31110 Prediction 0.2202 inc RAID01972407 dme-miR-971-3p miRNA MIMAT0005487 inc mRNA 31110 Prediction 0.2202 inc RAID02102988 dme-miR-1014-3p miRNA MIMAT0005027 inc mRNA 31110 Prediction 0.2202 inc RAID02113819 dme-miR-1006-3p miRNA MIMAT0005019 inc mRNA 31110 Prediction 0.1828 inc RAID02254099 dme-miR-375-3p miRNA MIMAT0005472 inc mRNA 31110 Prediction 0.1828 inc RAID02366914 dme-miR-317-3p miRNA MIMAT0000409 inc mRNA 31110 Prediction 0.2202 inc RAID02503797 dme-miR-79-3p miRNA MIMAT0000352 inc mRNA 31110 Prediction 0.2202 inc RAID02505612 dme-miR-219-5p miRNA MIMAT0000335 inc mRNA 31110 Prediction 0.2202 inc RAID02531719 dme-miR-993-3p miRNA MIMAT0005512 inc mRNA 31110 Prediction 0.2202 inc RAID02540435 dme-miR-964-5p miRNA MIMAT0005478 inc mRNA 31110 Prediction 0.1828 inc RAID02945828 dme-miR-963-5p miRNA MIMAT0005477 inc mRNA 31110 Prediction 0.2202 inc RAID03033822 dme-miR-1017-3p miRNA MIMAT0005030 inc mRNA 31110 Prediction 0.2202 inc RAID03064525 dme-miR-986-5p miRNA MIMAT0005503 inc mRNA 31110 Prediction 0.2202 inc RAID03099398 dme-miR-1000-5p miRNA MIMAT0005520 inc mRNA 31110 Prediction 0.1828 inc RAID03323599 dme-miR-277-3p miRNA MIMAT0000338 inc mRNA 31110 Prediction 0.2381 inc RAID03381996 dme-miR-1011-3p miRNA MIMAT0005024 inc mRNA 31110 Prediction 0.2202 inc RAID03444757 dme-miR-959-3p miRNA MIMAT0005473 inc mRNA 31110 Prediction 0.1828 inc RAID03485645 dme-miR-985-3p miRNA MIMAT0005502 inc mRNA 31110 Prediction 0.1828 inc RAID03563237 dme-miR-999-3p miRNA MIMAT0005519 inc mRNA 31110 Prediction 0.2202 inc RAID03741180 dme-miR-303-5p miRNA MIMAT0000388 inc mRNA 31110 Prediction 0.1828 inc RAID03798202 dme-miR-965-3p miRNA MIMAT0005480 inc mRNA 31110 Prediction 0.2202 inc RAID03898172 dme-miR-1007-3p miRNA MIMAT0005020 inc mRNA 31110 Prediction 0.2202 inc RAID04031681 dme-miR-998-3p miRNA MIMAT0005518 inc mRNA 31110 Prediction 0.1828