DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 31016 skpA auAGUAAAGUAUACGUUGCAUUUAUGu | |||||| | :|| ||||||: cuUGAUUUCA-CUUUAA--UAAAUAUa 2 26 266 289 [dm3:X:551897-551920:+] 0.5215 144 0 -7.76 -0.1371 MIMAT0000360 dme-miR-287 31016 skpA cacguuugcuaaaaGUUGUGu |||||| uaaauauaacuaccCAACACa 2 8 282 302 [dm3:X:551913-551933:+] 0.5160 120 6 -9.01 -0.1917 MIMAT0005482 dme-miR-967 31016 skpA gcGAAGAG-GUCUCCAUAGAGa :|| || :| | |||||| uuUUUGUCGUAAAUAUAUCUCa 2 20 192 213 [dm3:X:551823-551844:+] 0.5215 122 6 -7.42 -0.2337 MIMAT0005495 dme-miR-979 31016 skpA aaUCGGACUC--AAGCCCUU-CUu |||: |:| |||||||| || acAGCUAGGGGAUUCGGGAACGAa 2 20 36 59 [dm3:X:551667-551690:+] 0.4701 130 0 -22.84 -0.5914 MIMAT0005502 dme-miR-985 31016 skpA acgggcugguaaccuUGUAAAc |||||| uugcuacuuucauuuACAUUUu 2 8 90 111 [dm3:X:551721-551742:+] 0.4618 120 6 -10.36 -0.1842 MIMAT0005509 dme-miR-991 31016 skpA ugAAAGGUU-UGAUGUUGAAAUu ||| ||: |:|:|||||||| gaUUUGCAGCAUUGCAACUUUAc 2 21 63 85 [dm3:X:551694-551716:+] 0.5011 171 7 -15.87 -0.4689 MIMAT0005509 dme-miR-991 31016 skpA ugaaagguuugauguUGAAAUu |||||| guaacacuugauuucACUUUAa 2 8 260 281 [dm3:X:551891-551912:+] 0.5215 120 6 -7.57 -0.3387 MIMAT0011787 dme-miR-2280* 31016 skpA agucaaucgaaccuuCAUUUAa |||||| gguucauuuuuugucGUAAAUa 2 8 185 206 [dm3:X:551816-551837:+] 0.5215 120 6 -4.31 -0.1513 MIMAT0000114 dme-miR-9a 31016 skpA agUAUGUCGAUCUAUUG-GUUUCu |||:| ||| ||| ||||| aaAUAUAACUACCCAACACAAAGa 2 22 283 306 [dm3:X:551914-551937:+] 0.5160 133 0 -13.30 -1.2723 MIMAT0000332 dme-miR-274 31016 skpA uaaugggcaaucacagccaGUGUUUu |||||| aauaaauauaacuacccaaCACAAAg 2 8 280 305 [dm3:X:551911-551936:+] 0.5160 120 6 -12.35 -0.1872 MIMAT0000340 dme-miR-133 31016 skpA ugucgaccAACUUCCCCUGGUu || : ||||||| gcgcggcaUUUCGCGGGACCAa 2 15 2 23 [dm3:X:551633-551654:+] 0.6173 142 7 -19.13 -1.1815 MIMAT0000392 dme-miR-9c 31016 skpA agAUGUCGAUCUUAUG-GUUUCu ||:| ||| || ||||| aaUAUAACUACCCAACACAAAGa 2 21 284 306 [dm3:X:551915-551937:+] 0.5160 120 0 -10.67 -1.2723 MIMAT0005483 dme-miR-1002 31016 skpA agcggGAAACAUAGGUGAUGAAUu | ||| | |: :|||||| ugcagCAUUGCAACU-UUACUUAg 2 20 67 89 [dm3:X:551698-551720:+] 0.5011 137 6 -11.15 -0.1358 MIMAT0005493 dme-miR-977 31016 skpA aaucuguuGCACU--UAUAGAGu ||| | ||||||| uuuuuuguCGUAAAUAUAUCUCa 2 14 191 213 [dm3:X:551822-551844:+] 0.5215 144 7 -12.67 -1.2620 MIMAT0005504 dme-miR-987 31016 skpA guaGUUAGGUCUGAUAAAUGAAau || | || || ||||||| cagCAUUGCA-AC--UUUACUUag 3 22 69 89 [dm3:X:551700-551720:+] 0.5011 132 0 -7.64 -0.1239 MIMAT0005504 dme-miR-987 31016 skpA guAGUUAGGUCUGA--UAAA-UGAAAu | :| : | ||| |||| ||||| auUGGAGUAACACUUGAUUUCACUUUa 2 23 254 280 [dm3:X:551885-551911:+] 0.5215 121 0 -7.73 -1.2756 MIMAT0005504 dme-miR-987 31016 skpA guaguuaggucugauaaAUGAAAu |||||| caacuuuacuuaguugcUACUUUc 2 8 77 100 [dm3:X:551708-551731:+] 0.5011 120 6 -7.26 -0.1260 MIMAT0005516 dme-miR-252 31016 skpA gaggacgccgugaucAUGAAUc |||||| gcagcauugcaacuuUACUUAg 2 8 68 89 [dm3:X:551699-551720:+] 0.5011 120 6 -14.31 -0.1494

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score SkpA RAID00006478 dme-miR-987-5p miRNA MIMAT0005504 SkpA mRNA 31016 Prediction 0.1828 Dredd RAID00479151 dme-miR-305-5p miRNA MIMAT0000391 Dredd mRNA 31011 Prediction 0.2202 SkpA RAID00793470 dme-miR-977-3p miRNA MIMAT0005493 SkpA mRNA 31016 Prediction 0.2202 Dredd RAID00824637 dme-miR-11-3p miRNA MIMAT0000116 Dredd mRNA 31011 Prediction 0.1828 Dredd RAID01040746 dme-miR-2c-3p miRNA MIMAT0000411 Dredd mRNA 31011 Prediction 0.1828 SkpA RAID01283749 dme-miR-284-3p miRNA MIMAT0000348 SkpA mRNA 31016 Prediction 0.1828 Dredd RAID01283930 dme-miR-281-2-5p miRNA MIMAT0000349 Dredd mRNA 31011 Prediction 0.1828 Dredd RAID01364778 dme-miR-2b-3p miRNA MIMAT0000107 Dredd mRNA 31011 Prediction 0.1828 Dredd RAID01403915 dme-miR-6-3p miRNA MIMAT0000111 Dredd mRNA 31011 Prediction 0.1828 SkpA RAID01528746 dme-miR-967-5p miRNA MIMAT0005482 SkpA mRNA 31016 Prediction 0.1828 Dredd RAID01616103 dme-miR-282-5p miRNA MIMAT0000346 Dredd mRNA 31011 Prediction 0.1828 Dredd RAID01675879 dme-miR-13b-3p miRNA MIMAT0000119 Dredd mRNA 31011 Prediction 0.1828 SkpA RAID01856289 dme-miR-252-5p miRNA MIMAT0005516 SkpA mRNA 31016 Prediction 0.1828 Dredd RAID01896200 dme-miR-284-3p miRNA MIMAT0000348 Dredd mRNA 31011 Prediction 0.1828 SkpA RAID01983834 dme-miR-991-3p miRNA MIMAT0005509 SkpA mRNA 31016 Prediction 0.1828 SkpA RAID02202721 dme-miR-9c-5p miRNA MIMAT0000392 SkpA mRNA 31016 Prediction 0.1828 Dredd RAID02638143 dme-miR-308-3p miRNA MIMAT0000399 Dredd mRNA 31011 Prediction 0.1828 Dredd RAID02711856 dme-miR-955-5p miRNA MIMAT0005466 Dredd mRNA 31011 Prediction 0.1828 SkpA RAID02842674 dme-miR-133-3p miRNA MIMAT0000340 SkpA mRNA 31016 Prediction 0.2202 SkpA RAID02846412 dme-miR-274-5p miRNA MIMAT0000332 SkpA mRNA 31016 Prediction 0.1828 SkpA RAID02959269 dme-miR-9a-5p miRNA MIMAT0000114 SkpA mRNA 31016 Prediction 0.1828 Dredd RAID03156869 dme-miR-2a-3p miRNA MIMAT0000106 Dredd mRNA 31011 Prediction 0.1828 Dredd RAID03423061 dme-miR-375-3p miRNA MIMAT0005472 Dredd mRNA 31011 Prediction 0.2202 Dredd RAID03517129 dme-miR-13a-3p miRNA MIMAT0000118 Dredd mRNA 31011 Prediction 0.1828 SkpA RAID03734022 dme-miR-1002-5p miRNA MIMAT0005483 SkpA mRNA 31016 Prediction 0.1828