DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 35478 gus ugGUCAUGGACUACAUUAUGAGu || | | | | |||||||: uaCAAUUCGUAA--UAAUACUUu 2 22 135 155 [dm3:2R:1005013-1005033:-] 0.5396 134 0 -8.68 -0.1047 MIMAT0000363 dme-miR-288 35478 gus guacuUUACUUUAGCUGUACUUu ||| | |: ||||||| cuaacAAU--AUUUAACAUGAAa 2 19 375 395 [dm3:2R:1004773-1004793:-] 0.3726 147 7 -8.37 -1.1838 MIMAT0000364 dme-miR-289 35478 gus ucagcguccgagguGAAU-UUAUAAAu || | ||||||| auguauaaauaauuCUAACAAUAUUUa 2 13 361 387 [dm3:2R:1004781-1004807:-] 0.3726 143 7 -8.21 -0.8949 MIMAT0000364 dme-miR-289 35478 gus ucagcguccgAGGUGAAUUUAUAAau |:::: |||||||| aaaaagcauaUUUGUAUAAAUAUUaa 3 17 301 326 [dm3:2R:1004842-1004867:-] 0.3654 136 0 -6.14 -0.1072 MIMAT0005488 dme-miR-972 35478 gus cggAUUUAUAAGCAUAACAUGu |||| ||| | ||||||: cuaUAAAGAUU-G-AUUGUAUa 2 20 163 182 [dm3:2R:1004986-1005005:-] 0.5261 143 0 -9.97 -0.1492 MIMAT0005499 dme-miR-983 35478 gus agUAAUC-AAGCUUUGCAUAAUa :|||| || || |||||| guGUUAGAUUAUAAUAGUAUUAg 2 21 72 94 [dm3:2R:1005074-1005096:-] 0.5531 131 6 -7.74 -0.1323 MIMAT0005509 dme-miR-991 35478 gus ugaaAGGUUUGAUGUUGAAAUu |:|: | || |||||| acaaUUCGUAAUAAUACUUUAc 2 19 136 157 [dm3:2R:1005011-1005032:-] 0.5396 126 6 -6.18 -0.2019 MIMAT0010206 dme-miR-995* 35478 gus gcgucgaggGUGUAUUAAGCcc :|:| |||||| aaucauaggUAUACAAUUCGua 3 14 124 145 [dm3:2R:1005023-1005044:-] 0.5531 129 0 -9.57 -0.2095 MIMAT0011784 dme-miR-2279* 35478 gus uuaAAGUGUGUGUCUAUAAAUu ||| :| ||| ||||||| uaaUUC-UA-ACA-AUAUUUAa 2 20 370 388 [dm3:2R:1004780-1004798:-] 0.3726 149 7 -7.94 -1.0033 MIMAT0012196 dme-miR-2489 35478 gus ugaCGUUUA-UGU-UGUAUGUUAu | |||| |:| ::||||||| cagGAAAAUCAUAGGUAUACAAUu 2 20 118 141 [dm3:2R:1005027-1005050:-] 0.5531 157 7 -8.79 -0.9157 MIMAT0012196 dme-miR-2489 35478 gus ugACGUUUAU-GUUGUAUG-UUAu || ||: | ||| |||| ||| gaUGAAAGCAGCAA-AUACUAAUu 2 21 49 71 [dm3:2R:1005097-1005119:-] 0.5742 121 0 -10.34 -0.7292 MIMAT0012216 dme-miR-2501 35478 gus aaucggguccgugAGGUUUGAAUg |: ||||||| auuuguauaaauaUUAAAACUUAa 2 12 310 333 [dm3:2R:1004835-1004858:-] 0.3654 143 7 -7.66 -1.2226 MIMAT0000113 dme-miR-8 35478 gus cuguagaAAUGGACUGUCAUAAu ||| | |:|||||| uguuagaUUA--UAAUAGUAUUa 2 17 73 93 [dm3:2R:1005075-1005095:-] 0.5531 133 6 -9.04 -0.1313 MIMAT0000361 dme-miR-87 35478 gus gugUGGACUUUAAAACGA-GUu |::| || ||||||| || gcaAUUUCAAUUUUUGCUGCAu 2 19 25 46 [dm3:2R:1005122-1005143:-] 0.5954 130 0 -8.88 -0.8290 MIMAT0000389 dme-miR-31b 35478 gus gucgauaaggcuGUAGAACGgu |||||||| ggaaugacaucuCAUCUUGCaa 3 11 214 235 [dm3:2R:1004933-1004954:-] 0.4932 130 0 -14.74 -0.1181 MIMAT0000400 dme-miR-31a 35478 gus agucgauacggcuGUAGAACGgu |||||||| cggaaugacaucuCAUCUUGCaa 3 11 213 235 [dm3:2R:1004933-1004955:-] 0.4932 130 0 -16.54 -0.1181 MIMAT0000409 dme-miR-317 35478 gus ugaccuaUGGUGGUCGACACAAgu | :||:| :|||||| agcagcaAAUACUAAUUGUGUUag 3 18 55 78 [dm3:2R:1005090-1005113:-] 0.5742 137 0 -13.50 -0.2137 MIMAT0000412 dme-miR-iab-4-5p 35478 gus agUCCUAUGUA--AGUCAUAUGca |||| | || | :|||||| acAGGA-AAAUCAUAGGUAUACaa 3 21 117 139 [dm3:2R:1005029-1005051:-] 0.5531 133 0 -16.32 -0.1230 MIMAT0000413 dme-miR-iab-4-3p 35478 gus caaUG-CAUAUGACU-UCCAUAUGgc || | | | | | |||||||| ccaACAGGAAAAUCAUAGGUAUACaa 3 22 114 139 [dm3:2R:1005029-1005054:-] 0.5531 135 0 -11.55 -0.1242 MIMAT0005474 dme-miR-960 35478 gus cgAUACGUUAGAC---CUUAUGAGu ||| ||||: | ||||||: ggUAUACAAUUCGUAAUAAUACUUu 2 21 131 155 [dm3:2R:1005013-1005037:-] 0.5396 139 0 -7.97 -0.1068 MIMAT0005478 dme-miR-964 35478 gus uucaauucgaggggaUAAGAUu |||||| auguauguauaaauaAUUCUAa 2 8 357 378 [dm3:2R:1004790-1004811:-] 0.3726 120 6 -5.49 -0.1461 MIMAT0005483 dme-miR-1002 35478 gus agcgggaaacaUAGGUGAUGAAUu || | :|||||| aauucguaauaAUACUUUACUUAa 2 14 138 161 [dm3:2R:1005007-1005030:-] 0.5396 133 6 -9.50 -0.1413 MIMAT0005501 dme-miR-927 35478 gus ccauuucgcauccUUAAGAUUu |||||||| uguauguauaaauAAUUCUAAc 2 10 358 379 [dm3:2R:1004789-1004810:-] 0.3726 145 7 -6.62 -1.0250 MIMAT0005504 dme-miR-987 35478 gus guAGUUAGGUCUGA-UAAAUGAAAu | || :| |:| :|||||||| ucUGAAAGUA-AUUGGUUUACUUUu 2 23 399 422 [dm3:2R:1004746-1004769:-] 0.3726 151 7 -7.24 -0.6920 MIMAT0005504 dme-miR-987 35478 gus guaGUUAGGUCUGAU----AAAUGAAau ||||:|: | || ||||||| auaCAAUUCGUAAUAAUACUUUACUUaa 3 22 134 161 [dm3:2R:1005007-1005034:-] 0.5396 140 0 -12.67 -0.1095 MIMAT0005507 dme-miR-137 35478 gus gaUGCACAUAAGAGUUCGUUAu | || || :|||||| uuAAGUAGAUGGAGGAGCAAUu 2 21 9 30 [dm3:2R:1005138-1005159:-] 0.5617 128 6 -7.43 -0.2936 MIMAT0005516 dme-miR-252 35478 gus gaggacgccgugaucAUGAAUc |||||| uucguaauaauacuuUACUUAa 2 8 140 161 [dm3:2R:1005007-1005028:-] 0.5396 120 6 -6.56 -0.1455

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score gus RAID00440867 dme-miR-313-3p miRNA MIMAT0000405 gus mRNA 35478 Prediction 0.1828 gus RAID00574219 dme-miR-960-5p miRNA MIMAT0005474 gus mRNA 35478 Prediction 0.2202 gus RAID00846857 dme-miR-312-3p miRNA MIMAT0000404 gus mRNA 35478 Prediction 0.1828 gus RAID00857488 dme-miR-iab-4-3p miRNA MIMAT0000413 gus mRNA 35478 Prediction 0.1828 gus RAID01181834 dme-miR-137-3p miRNA MIMAT0005507 gus mRNA 35478 Prediction 0.1828 gus RAID01249907 dme-miR-311-3p miRNA MIMAT0000403 gus mRNA 35478 Prediction 0.1828 gus RAID01358249 dme-miR-31a-5p miRNA MIMAT0000400 gus mRNA 35478 Prediction 0.1828 gus RAID01363547 dme-miR-iab-4-5p miRNA MIMAT0000412 gus mRNA 35478 Prediction 0.1828 gus RAID01653621 dme-miR-310-3p miRNA MIMAT0000402 gus mRNA 35478 Prediction 0.1828 gus RAID01666017 dme-miR-92a-3p miRNA MIMAT0000334 gus mRNA 35478 Prediction 0.1828 gus RAID02159989 dme-miR-927-5p miRNA MIMAT0005501 gus mRNA 35478 Prediction 0.2202 gus RAID02189896 dme-miR-1002-5p miRNA MIMAT0005483 gus mRNA 35478 Prediction 0.2202 gus RAID02454527 dme-miR-87-3p miRNA MIMAT0000361 gus mRNA 35478 Prediction 0.1828 gus RAID02755973 dme-miR-92b-3p miRNA MIMAT0000358 gus mRNA 35478 Prediction 0.1828 gus RAID02813573 dme-miR-317-3p miRNA MIMAT0000409 gus mRNA 35478 Prediction 0.1828 gus RAID02863027 dme-miR-8-3p miRNA MIMAT0000113 gus mRNA 35478 Prediction 0.2202 gus RAID02960714 dme-miR-964-5p miRNA MIMAT0005478 gus mRNA 35478 Prediction 0.2202 gus RAID03062158 dme-miR-11-3p miRNA MIMAT0000116 gus mRNA 35478 Prediction 0.1828 gus RAID03097619 dme-miR-987-5p miRNA MIMAT0005504 gus mRNA 35478 Prediction 0.2202 gus RAID03811652 dme-miR-252-5p miRNA MIMAT0005516 gus mRNA 35478 Prediction 0.2202 gus RAID04037921 dme-miR-31b-5p miRNA MIMAT0000389 gus mRNA 35478 Prediction 0.1828