DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 43793 bip2 cacGUUUGCUAAAAGUUGUGu :||| || | |||||| uaaUAAA--AUGUGCAACACc 2 19 116 134 [dm3:4:480513-480531:-] 0.4327 123 6 -10.29 -0.2022 MIMAT0005500 dme-miR-984 43793 bip2 uuUAAGGUUGGCAUAAAUGGAGu :| :||| || ||||||: gaGUAUCAA--GUUAUUACCUUa 2 22 97 117 [dm3:4:480530-480550:-] 0.3958 134 0 -12.67 -0.1949 MIMAT0000334 dme-miR-92a 43793 bip2 uauccggcccUGUUCACGUUac | | |||||| uaccuuaauaAAAUGUGCAAca 3 13 111 132 [dm3:4:480515-480536:-] 0.4327 124 0 -8.01 -0.2077 MIMAT0000358 dme-miR-92b 43793 bip2 cguccggcccugauCACGUUaa |||||| uaccuuaauaaaauGUGCAAca 3 9 111 132 [dm3:4:480515-480536:-] 0.4327 120 0 -6.77 -0.2077 MIMAT0000391 dme-miR-305 43793 bip2 gucucguGGACUACUUCAU-GUUa |:||:| :|||| ||| uaaauuuCUUGGUCGAGUAUCAAg 2 17 83 106 [dm3:4:480541-480564:-] 0.3958 124 0 -12.09 -1.0826 MIMAT0000402 dme-miR-310 43793 bip2 uuuccggcccUUCACACGUUau || ||||||| uaccuuaauaAAAUGUGCAAca 3 13 111 132 [dm3:4:480515-480536:-] 0.4327 132 0 -7.95 -0.2077 MIMAT0000403 dme-miR-311 43793 bip2 aguccggccacUUACACGUUau ||||||||| uaccuuaauaaAAUGUGCAAca 3 12 111 132 [dm3:4:480515-480536:-] 0.4327 135 0 -10.75 -0.2058 MIMAT0000404 dme-miR-312 43793 bip2 aguccggcagagUUCACGUUau | |||||| uaccuuaauaaaAUGUGCAAca 3 11 111 132 [dm3:4:480515-480536:-] 0.4327 122 0 -7.27 -0.2058 MIMAT0000405 dme-miR-313 43793 bip2 agcccgacACUUUUCACGUUau | ||| |||||| uaccuuaaUAAAAUGUGCAAca 3 15 111 132 [dm3:4:480515-480536:-] 0.4327 134 0 -6.80 -0.2020 MIMAT0005476 dme-miR-962 43793 bip2 cugUCGUAGUUAAAGAGAUGGAAUa ||:||||| || | ||||||| ucgAGUAUCAAGUUAU-UACCUUAa 2 23 95 118 [dm3:4:480529-480552:-] 0.3958 176 7 -18.55 -1.2345 MIMAT0005477 dme-miR-963 43793 bip2 cuUUGUUGGACUAUAAAUGGAAca |::| | | || ||||||| cgAGUAUCAAGUUA-UUACCUUaa 3 23 96 118 [dm3:4:480529-480551:-] 0.3958 136 0 -8.36 -0.1954 MIMAT0005478 dme-miR-964 43793 bip2 uucaauucgaggggaUAAGAUu |||||| ---------------AUUCUAa 2 8 1 7 [dm3:4:480640-480646:-] 0.5103 120 6 -4.60 -0.2219 MIMAT0005487 dme-miR-971 43793 bip2 agugacAUUCUUCA--UUGUGGUu ||| | || ||||||| ccuuaaUAAAAUGUGCAACACCAa 2 17 113 136 [dm3:4:480511-480534:-] 0.4327 151 7 -11.23 -0.6592 MIMAT0005501 dme-miR-927 43793 bip2 ccauuucgcauccuUAAGAUUu ||||||| --------------AUUCUAAu 2 9 1 8 [dm3:4:480639-480646:-] 0.5103 140 7 -3.94 -0.7938

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score bip2 RAID00632794 dme-miR-962-5p miRNA MIMAT0005476 bip2 mRNA 43793 Prediction 0.2202 bip2 RAID00923093 dme-miR-313-3p miRNA MIMAT0000405 bip2 mRNA 43793 Prediction 0.1828 bip2 RAID01532679 dme-miR-927-5p miRNA MIMAT0005501 bip2 mRNA 43793 Prediction 0.1828 bip2 RAID01616658 dme-miR-305-5p miRNA MIMAT0000391 bip2 mRNA 43793 Prediction 0.1828 bip2 RAID01782883 dme-miR-312-3p miRNA MIMAT0000404 bip2 mRNA 43793 Prediction 0.1828 bip2 RAID02163042 dme-miR-971-3p miRNA MIMAT0005487 bip2 mRNA 43793 Prediction 0.2202 bip2 RAID02640618 dme-miR-311-3p miRNA MIMAT0000403 bip2 mRNA 43793 Prediction 0.1828 bip2 RAID03001554 dme-miR-964-5p miRNA MIMAT0005478 bip2 mRNA 43793 Prediction 0.1828 bip2 RAID03012377 dme-miR-92a-3p miRNA MIMAT0000334 bip2 mRNA 43793 Prediction 0.1828 bip2 RAID03464236 dme-miR-310-3p miRNA MIMAT0000402 bip2 mRNA 43793 Prediction 0.1828 bip2 RAID03850261 dme-miR-963-5p miRNA MIMAT0005477 bip2 mRNA 43793 Prediction 0.1828 bip2 RAID03943569 dme-miR-92b-3p miRNA MIMAT0000358 bip2 mRNA 43793 Prediction 0.1828