DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005473 dme-miR-959 43785 Rad23 aaguauuaugggggCUACUGUu ||||||| --------------GAUGACAa 2 9 1 8 [dm3:4:330816-330823:+] 0.6004 140 7 -9.40 -1.2519 MIMAT0005473 dme-miR-959 43785 Rad23 aaguauuaugggggCUACUGUu ||||||| --------------GAUGACAa 2 9 1 8 [dm3:4:330816-330823:+] 0.6004 140 7 -9.40 -0.9239 MIMAT0005026 dme-miR-1013 43785 Rad23 gcucAAGCCGUAUGAAAAUa ||: :|| |||||| auucUUUUAUAUUCUUUUAa 2 17 96 115 [dm3:4:330911-330930:+] 0.4975 124 6 -4.90 -0.6523 MIMAT0005026 dme-miR-1013 43785 Rad23 gcucaagccguauGAAAAUa |||||| gaucauaaaaauuCUUUUAu 2 8 86 105 [dm3:4:330901-330920:+] 0.4989 120 6 -5.57 -0.2613 MIMAT0005026 dme-miR-1013 43785 Rad23 gcucAAGCCGUAUGAAAAUa ||: :|| |||||| auucUUUUAUAUUCUUUUAa 2 17 96 115 [dm3:4:330911-330930:+] 0.4975 124 6 -4.90 -0.2900 MIMAT0005026 dme-miR-1013 43785 Rad23 gcucaagccguauGAAAAUa |||||| gaucauaaaaauuCUUUUAu 2 8 86 105 [dm3:4:330901-330920:+] 0.4989 120 6 -5.57 -0.2120 MIMAT0012215 dme-miR-2500 43785 Rad23 gacuccaggugugUGUUUUAgg ||||||| ---------gaugACAAAAUgu 3 10 1 13 [dm3:4:330816-330828:+] 0.6004 125 0 -4.88 -0.2165 MIMAT0000332 dme-miR-274 43785 Rad23 uaAUGGGCA-AUCACAGCCAGUGUUUu || :|| | ||||| |||:||| auUAAAUGUAAAAUGUCGAUCAUAAAa 2 25 69 95 [dm3:4:330884-330910:+] 0.4989 151 0 -19.24 -0.1159 MIMAT0000332 dme-miR-274 43785 Rad23 uaAUGGGCA-AUCACAGCCAGUGUUUu || :|| | ||||| |||:||| auUAAAUGUAAAAUGUCGAUCAUAAAa 2 25 69 95 [dm3:4:330884-330910:+] 0.4989 151 0 -19.24 -0.1087 MIMAT0005478 dme-miR-964 43785 Rad23 uucaauucGAGGGGAUAAGAuu ||::: |||||| uaaaaauuCUUUUAUAUUCUuu 3 15 91 112 [dm3:4:330906-330927:+] 0.4975 130 0 -8.48 -0.1519 MIMAT0005478 dme-miR-964 43785 Rad23 uucaauucGAGGGGAUAAGAuu ||::: |||||| uaaaaauuCUUUUAUAUUCUuu 3 15 91 112 [dm3:4:330906-330927:+] 0.4975 130 0 -8.48 -0.2575 MIMAT0005016 dme-miR-1003 43785 Rad23 gacacUUAUACAUUUACACUCu :||: |||||| || -----GAUGACAAAAUGUAAGa 2 18 1 17 [dm3:4:330816-330832:+] 0.6004 121 0 -8.11 -0.2018

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rad23 RAID00108734 dme-miR-1013-3p miRNA MIMAT0005026 Rad23 mRNA 43785 Prediction 0.1828 Rad23 RAID01594481 dme-miR-959-3p miRNA MIMAT0005473 Rad23 mRNA 43785 Prediction 0.1828 Rad23 RAID02225223 dme-miR-274-5p miRNA MIMAT0000332 Rad23 mRNA 43785 Prediction 0.1828 Rad23 RAID03312711 dme-miR-985-3p miRNA MIMAT0005502 Rad23 mRNA 43785 Prediction 0.1828 Rad23 RAID03786548 dme-miR-964-5p miRNA MIMAT0005478 Rad23 mRNA 43785 Prediction 0.1828 Rad23 RAID03883728 dme-miR-1003-3p miRNA MIMAT0005016 Rad23 mRNA 43785 Prediction 0.1828