DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005464 dme-miR-iab-4as-3p 34505 Stam auuugcauAUGACUUACAUAGg ||:| ||||||: gagauaacUAUU--AUGUAUUa 2 15 393 412 [dm3:2L:10861914-10861933:+] 0.5737 127 0 -7.00 -0.1277 MIMAT0005488 dme-miR-972 34505 Stam cgGAUUUAUAA-GC--AUAACAUGu :|| :|||| :| |||||||| uaUUAUGUAUUAUGUUUAUUGUACg 2 21 401 425 [dm3:2L:10861922-10861946:+] 0.5737 158 7 -13.15 -1.0229 MIMAT0005491 dme-miR-975 34505 Stam uauguccuacauccuuCACAAAu |||||| cgaguuuucguuuuuuGUGUUUa 2 8 248 270 [dm3:2L:10861769-10861791:+] 0.4424 120 6 -7.21 -0.1070 MIMAT0005509 dme-miR-991 34505 Stam ugAAAGGUUUGAUGUUGAAAUu || || :| :|||||||| aaUUGCCCGA--GCAACUUUAa 2 21 43 62 [dm3:2L:10861564-10861583:+] 0.4424 153 7 -15.28 -0.2548 MIMAT0005022 dme-miR-1009 34505 Stam gacuuUACAUUGUUAAAAACUCu |||| ||| ||||||| cugcuAUGU-ACA--UUUUGAGa 2 19 146 165 [dm3:2L:10861667-10861686:+] 0.4424 153 7 -16.72 -0.8422 MIMAT0011787 dme-miR-2280* 34505 Stam agucaaucgaaccUUCAUUUaa ||||||| auaaaaauauacuAAGUAAAca 3 10 469 490 [dm3:2L:10861990-10862011:+] 0.5377 125 0 -3.88 -0.2794 MIMAT0011791 dme-miR-2283 34505 Stam uaacaGCAUAAGUACUAUAAAAg || | | || ||||||| uccaaCGAAAUGAU-AUAUUUUu 2 19 278 299 [dm3:2L:10861799-10861820:+] 0.4424 152 7 -7.89 -0.6214 MIMAT0012198 dme-miR-2491 34505 Stam ucgUUGACGUUUCCGUUGUCGc | |||: | ||||||| auaAUCUGU--AUUCAACAGCa 2 20 347 366 [dm3:2L:10861868-10861887:+] 0.5737 144 7 -15.39 -1.2588 MIMAT0012215 dme-miR-2500 34505 Stam gacuccAG-GUGUGU-GUUUUAGg || ||: || :|||||| aacgaaUCACAUUCAUUAAAAUCa 2 17 446 469 [dm3:2L:10861967-10861990:+] 0.5737 134 6 -12.71 -0.4897 MIMAT0000105 dme-miR-1 34505 Stam gagguaugaagaAAUGUAAGgu | |||||| uaacgaaacgaaUCACAUUCau 3 11 440 461 [dm3:2L:10861961-10861982:+] 0.5737 122 0 -6.72 -0.1409 MIMAT0000319 dme-miR-263a 34505 Stam cacuuaagaaGGUCACGGUAAUUg :|| :|||||| acgaaacgaaUCACAUUCAUUAAa 2 15 442 465 [dm3:2L:10861963-10861986:+] 0.5737 126 6 -7.10 -0.3680 MIMAT0000332 dme-miR-274 34505 Stam uaaugggcaaucacagccAGUGUUUu |||:||| gaaucacauucauuaaaaUCAUAAAa 2 9 449 474 [dm3:2L:10861970-10861995:+] 0.5737 124 0 -9.70 -0.1812 MIMAT0000408 dme-miR-316 34505 Stam gcgGUCAU--UCGCCUUUUUCUGu || || ||: ||||||||: aggCAAUACCAGUCGAAAAAGAUa 2 20 309 332 [dm3:2L:10861830-10861853:+] 0.5737 146 0 -18.38 -0.1501 MIMAT0000413 dme-miR-iab-4-3p 34505 Stam caaugcaUAUGACUUCCAUAUGGc ||| | || ||||||| caaauuaAUA-UCAA-GUAUACCc 2 18 223 244 [dm3:2L:10861744-10861765:+] 0.4424 149 7 -8.03 -0.8764 MIMAT0000413 dme-miR-iab-4-3p 34505 Stam caaugcauaugacuuccAUAUGGc |||||| cagucgaaaaagauauaUAUACCa 2 8 318 341 [dm3:2L:10861839-10861862:+] 0.5737 120 6 -6.78 -0.4397 MIMAT0005476 dme-miR-962 34505 Stam cugucgUAGUUAAAG---AGAU-GGAAUa ||:||| || | || ||||| agccaaAUUAAUAUCAAGUAUACCCUUAc 2 20 220 248 [dm3:2L:10861741-10861769:+] 0.4424 122 0 -9.18 -0.8537 MIMAT0005487 dme-miR-971 34505 Stam agUGACAUUCUUCA-UUGUGGUu | | || |||| ||||| | aaAAUAUACUAAGUAAACACAAu 2 21 472 494 [dm3:2L:10861993-10862015:+] 0.4930 127 0 -9.53 -0.1178 MIMAT0005024 dme-miR-1011 34505 Stam gacgCUCGCUAA-----ACUUGG-UUAUu |||| ||| |||||| |||| agaaGAGCAAUUGUCAGUGAACCAAAUAu 2 20 163 191 [dm3:2L:10861684-10861712:+] 0.4424 126 0 -14.20 -0.4909

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Stam RAID00254159 dme-miR-962-5p miRNA MIMAT0005476 Stam mRNA 34505 Prediction 0.1828 Stam RAID00271480 dme-miR-991-3p miRNA MIMAT0005509 Stam mRNA 34505 Prediction 0.1828 Stam RAID00634743 dme-miR-1011-3p miRNA MIMAT0005024 Stam mRNA 34505 Prediction 0.1828 Stam RAID00735845 dme-miR-34-5p miRNA MIMAT0000350 Stam mRNA 34505 Prediction 0.1828 Stam RAID00936009 dme-miR-972-3p miRNA MIMAT0005488 Stam mRNA 34505 Prediction 0.1828 Stam RAID01086397 dme-miR-274-5p miRNA MIMAT0000332 Stam mRNA 34505 Prediction 0.1828 Stam RAID01121188 dme-miR-975-5p miRNA MIMAT0005491 Stam mRNA 34505 Prediction 0.1828 Stam RAID01210974 dme-mir-iab-4 miRNA MI0000432 Stam mRNA 34505 Prediction 0.1828 Stam RAID01717228 dme-miR-iab-4-3p miRNA MIMAT0000413 Stam mRNA 34505 Prediction 0.2202 Stam RAID01800686 dme-miR-971-3p miRNA MIMAT0005487 Stam mRNA 34505 Prediction 0.1828 Stam RAID01802742 dme-miR-1-3p miRNA MIMAT0000105 Stam mRNA 34505 Prediction 0.1828 Stam RAID02085526 dme-miR-1009-3p miRNA MIMAT0005022 Stam mRNA 34505 Prediction 0.1828 Stam RAID02378386 dme-miR-14-3p miRNA MIMAT0000120 Stam mRNA 34505 Prediction 0.1828 Stam RAID02468636 dme-miR-316-5p miRNA MIMAT0000408 Stam mRNA 34505 Prediction 0.1828 Stam RAID03808189 dme-miR-263a-5p miRNA MIMAT0000319 Stam mRNA 34505 Prediction 0.1828 Stam RAID04027782 dme-miR-981-3p miRNA MIMAT0005497 Stam mRNA 34505 Prediction 0.1828