DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 43505 CG7609 ucagcguccGAGGUGAA-UUUAUAAau ||:: :|| ||||||| guuacuuaaCUUUUUUUGAAAUAUUgg 3 18 223 249 [dm3:3R:25567720-25567746:-] 0.5026 136 0 -5.90 -0.1338 MIMAT0005475 dme-miR-961 43505 CG7609 uagaGUCAAU-GACCACUA-GUUu | |||: ||| |||| ||| aaaaCUGUUGUCUGUUGAUGCAAg 2 19 918 941 [dm3:3R:25567691-25567714:-] 0.4833 125 0 -13.78 -0.7926 MIMAT0005475 dme-miR-961 43505 CG7609 uagaGUCAAU-GACCACUA-GUUu | |||: ||| |||| ||| aaaaCUGUUGUCUGUUGAUGCAAg 2 19 255 278 [dm3:3R:25567691-25567714:-] 0.4833 125 0 -13.78 -0.9305 MIMAT0005494 dme-miR-978 43505 CG7609 gaCGUUAAA---UGCCGUGAC-CUGu |||| | |:||:|||| ||| cgGCAAGGUGGGAUGGUACUGCGACa 2 21 468 493 [dm3:3R:25568139-25568164:-] 0.6996 123 0 -24.84 -0.6550 MIMAT0005509 dme-miR-991 43505 CG7609 ugaaagguuuGAUGUUGAAAUu ||:|||||||| aaucgaucuuCUGCAACUUUAa 2 13 849 870 [dm3:3R:25567762-25567783:-] 0.5026 156 7 -17.49 -0.6579 MIMAT0005509 dme-miR-991 43505 CG7609 ugaaagguuuGAUGUUGAAAUu ||:|||||||| aaucgaucuuCUGCAACUUUAa 2 13 186 207 [dm3:3R:25567762-25567783:-] 0.5026 156 7 -17.49 -0.8052 MIMAT0005509 dme-miR-991 43505 CG7609 ugaAAGGUUUGAUGUUGAAAuu ||: ||| :|||||| augUUUGUUACU-UAACUUUuu 3 20 217 237 [dm3:3R:25567732-25567752:-] 0.5026 129 0 -6.72 -0.1108 MIMAT0005021 dme-miR-1008 43505 CG7609 acauUUGUGUUUUUCGACACu | |:| | :||||||| cugcAUCGCUAUGAGCUGUGg 2 18 337 357 [dm3:3R:25568275-25568295:-] 0.6152 153 7 -17.09 -0.2468 MIMAT0005022 dme-miR-1009 43505 CG7609 gacuuuacAUUGUUAAAAACUcu |||| ||||||| uuguuacuUAACUUUUUUUGAaa 3 16 884 906 [dm3:3R:25567726-25567748:-] 0.5026 139 0 -8.33 -0.2070 MIMAT0005022 dme-miR-1009 43505 CG7609 gacuuuacAUUGUUAAAAACUcu |||| ||||||| uuguuacuUAACUUUUUUUGAaa 3 16 221 243 [dm3:3R:25567726-25567748:-] 0.5026 139 0 -8.33 -0.2953 MIMAT0011787 dme-miR-2280* 43505 CG7609 agucaauCGAAC-CUUCAUUUAa |:||| ||||||||| gcucaacGUUUGUGAAGUAAAUu 2 16 813 835 [dm3:3R:25567797-25567819:-] 0.5026 162 7 -15.77 -0.5698 MIMAT0011787 dme-miR-2280* 43505 CG7609 agucaauCGAAC-CUUCAUUUAa |:||| ||||||||| gcucaacGUUUGUGAAGUAAAUu 2 16 150 172 [dm3:3R:25567797-25567819:-] 0.5026 162 7 -15.77 -0.7173 MIMAT0011789 dme-miR-2281 43505 CG7609 cguuaugacgucuaUGUCUAu |||||| gcacuagacacuaaACAGAUu 2 8 88 108 [dm3:3R:25567861-25567881:-] 0.5026 120 6 -7.32 -0.1323 MIMAT0012204 dme-miR-2495 43505 CG7609 ucAGUCGG---GUUAACUUCACGGu |: ||| || | ||||||| acUUUGCCAAACACUCCAAGUGCCc 2 21 608 632 [dm3:3R:25568000-25568024:-] 0.7457 147 7 -14.41 -0.3934 MIMAT0000106 dme-miR-2a 43505 CG7609 cgagUAGUUU--CGACCGAC-ACUAu || ||| |:|| ||| |||| gaaaAUAAAACUGUUGUCUGUUGAUg 2 20 912 937 [dm3:3R:25567695-25567720:-] 0.4929 126 0 -12.15 -0.6324 MIMAT0000106 dme-miR-2a 43505 CG7609 cgagUAGUUU--CGACCGAC-ACUAu || ||| |:|| ||| |||| gaaaAUAAAACUGUUGUCUGUUGAUg 2 20 249 274 [dm3:3R:25567695-25567720:-] 0.4929 126 0 -12.15 -0.7802 MIMAT0000107 dme-miR-2b 43505 CG7609 cgaggAGUUU--CGACCGAC-ACUAu | ||| |:|| ||| |||| gaaaaUAAAACUGUUGUCUGUUGAUg 2 19 912 937 [dm3:3R:25567695-25567720:-] 0.4929 121 0 -12.15 -0.6324 MIMAT0000107 dme-miR-2b 43505 CG7609 cgaggAGUUU--CGACCGAC-ACUAu | ||| |:|| ||| |||| gaaaaUAAAACUGUUGUCUGUUGAUg 2 19 249 274 [dm3:3R:25567695-25567720:-] 0.4929 121 0 -12.15 -0.7802 MIMAT0000332 dme-miR-274 43505 CG7609 uaaugggcaaucacagccaGUGUUUu |||||| cuucugcaacuuuaaauagCACAAAu 2 8 193 218 [dm3:3R:25567751-25567776:-] 0.5026 120 6 -10.61 -0.1323 MIMAT0000339 dme-miR-278 43505 CG7609 uuugccugcuuucagGGUGGCu |||||| ucauccucuuuuuagCCACCGc 2 8 43 64 [dm3:3R:25568568-25568589:-] 0.6317 120 6 -12.60 -0.1005 MIMAT0000406 dme-miR-314 43505 CG7609 ggcuugaaUA-ACCGAGCUUau || | ||||||| uuauauaaAUGUAGCUCGAAga 3 14 110 131 [dm3:3R:25567838-25567859:-] 0.5026 128 0 -10.22 -0.1315 MIMAT0000411 dme-miR-2c 43505 CG7609 cgggUAGUUU--CGACCGAC-ACUAu || ||| |:|| ||| |||| gaaaAUAAAACUGUUGUCUGUUGAUg 2 20 912 937 [dm3:3R:25567695-25567720:-] 0.4929 126 0 -12.15 -0.6324 MIMAT0000411 dme-miR-2c 43505 CG7609 cgggUAGUUU--CGACCGAC-ACUAu || ||| |:|| ||| |||| gaaaAUAAAACUGUUGUCUGUUGAUg 2 20 249 274 [dm3:3R:25567695-25567720:-] 0.4929 126 0 -12.15 -0.7802 MIMAT0005469 dme-miR-956 43505 CG7609 uuaccuaaucucaccaGAGCUUu |||||| uuuuauauaaauguagCUCGAAg 2 8 771 793 [dm3:3R:25567839-25567861:-] 0.5026 120 6 -10.30 -0.1098 MIMAT0005469 dme-miR-956 43505 CG7609 uuaccuaaucucaccaGAGCUUu |||||| uuuuauauaaauguagCUCGAAg 2 8 108 130 [dm3:3R:25567839-25567861:-] 0.5026 120 6 -10.30 -0.1627 MIMAT0005477 dme-miR-963 43505 CG7609 cuuugUUGGACUAUAAAUGGAACa |:|| ||| ||||||| acuuaAGCCCAAUAAGUACCUUGc 2 20 729 752 [dm3:3R:25567880-25567903:-] 0.5063 159 7 -15.63 -0.5079 MIMAT0005477 dme-miR-963 43505 CG7609 cuuugUUGGACUAUAAAUGGAACa |:|| ||| ||||||| acuuaAGCCCAAUAAGUACCUUGc 2 20 66 89 [dm3:3R:25567880-25567903:-] 0.5063 159 7 -15.63 -0.6555 MIMAT0005483 dme-miR-1002 43505 CG7609 agcgggaaacAUAGGUGAUGAAUu |:|::::|||||| auagcacaaaUGUUUGUUACUUAa 2 15 208 231 [dm3:3R:25567738-25567761:-] 0.5026 138 6 -13.01 -0.1117 MIMAT0005504 dme-miR-987 43505 CG7609 guaguuaggUCUGAUAAAUGAAau | ::| |||||| auagcacaaAUGUUUGUUACUUaa 3 16 208 231 [dm3:3R:25567738-25567761:-] 0.5026 123 0 -5.67 -0.1100 MIMAT0005516 dme-miR-252 43505 CG7609 gaggacgccgugaucAUGAAUc |||||| agcacaaauguuuguUACUUAa 2 8 210 231 [dm3:3R:25567738-25567759:-] 0.5026 120 6 -6.16 -0.1174 MIMAT0005519 dme-miR-999 43505 CG7609 ucugUGUCAGAAUGUC-AAUUGu |:: :|||||| ||||| cucgAUGUAUUUACAGCUUAACu 2 19 13 35 [dm3:3R:25568597-25568619:-] 0.6317 126 0 -13.14 -1.2283

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG7609 RAID00320484 dme-miR-278-3p miRNA MIMAT0000339 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID00551953 dme-miR-315-5p miRNA MIMAT0000407 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID00857801 dme-miR-314-3p miRNA MIMAT0000406 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID01055955 dme-miR-987-5p miRNA MIMAT0005504 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID01238801 dme-miR-252-5p miRNA MIMAT0005516 CG7609 mRNA 43505 Prediction 0.2202 CG7609 RAID01300485 dme-miR-1-3p miRNA MIMAT0000105 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID01302787 dme-miR-2c-3p miRNA MIMAT0000411 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID01827059 dme-miR-956-3p miRNA MIMAT0005469 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID01954136 dme-miR-999-3p miRNA MIMAT0005519 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID02034619 dme-miR-2a-3p miRNA MIMAT0000106 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID02194475 dme-miR-1002-5p miRNA MIMAT0005483 CG7609 mRNA 43505 Prediction 0.2202 CG7609 RAID02335042 dme-miR-2b-3p miRNA MIMAT0000107 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID02436266 dme-miR-1011-3p miRNA MIMAT0005024 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID03372002 dme-miR-274-5p miRNA MIMAT0000332 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID03378787 dme-miR-991-3p miRNA MIMAT0005509 CG7609 mRNA 43505 Prediction 0.1828 CG7609 RAID03383178 dme-miR-963-5p miRNA MIMAT0005477 CG7609 mRNA 43505 Prediction 0.2202 CG7609 RAID03697201 dme-miR-1009-3p miRNA MIMAT0005022 CG7609 mRNA 43505 Prediction 0.1828