DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 43654 CG31012 gccccgcucucuuaCUAUUCc |||||| uaucugauaauuucGAUAAGu 2 8 254 274 [dm3:3R:26652021-26652041:+] 0.5022 120 6 -4.55 -0.1450 MIMAT0000343 dme-miR-280 43654 CG31012 auaGUAAAGUAUACGUUGCAU-UUAUGu |:||||:| | : :| || ||||| aacCGUUUCGUUUUUCGC-UACAAUACu 2 25 212 238 [dm3:3R:26651979-26652005:+] 0.5022 130 0 -12.87 -0.6605 MIMAT0000364 dme-miR-289 43654 CG31012 ucAGCGUCCGAGGU-----GAAUUUAUAAAu ||| | | |||| |||:|||||| gaUCGAACGAUCCAGAUAUAUUAGAUAUUUa 2 25 28 58 [dm3:3R:26652510-26652540:+] 0.5022 147 6 -16.80 -0.1179 MIMAT0005464 dme-miR-iab-4as-3p 43654 CG31012 auuugcAUAUGACUUACAUAGg | || | ||||||: uuauuuUUUAAAG-AUGUAUUa 2 17 369 389 [dm3:3R:26652136-26652156:+] 0.5022 126 0 -5.70 -0.1440 MIMAT0005499 dme-miR-983 43654 CG31012 agUAAUCAAGCUUUGCAUAAUa ||| || |:|:|||||| uuAUUUUUUAAAGAUGUAUUAa 2 21 369 390 [dm3:3R:26652136-26652157:+] 0.5022 148 6 -10.19 -0.2406 MIMAT0011784 dme-miR-2279* 43654 CG31012 uuaaagUGUGU-GUCUAUAAAUu |:|:| :||||||||| auccagAUAUAUUAGAUAUUUAu 2 17 37 59 [dm3:3R:26652519-26652541:+] 0.5022 159 7 -11.92 -0.9470 MIMAT0011791 dme-miR-2283 43654 CG31012 uaacAGCAUAAGUACU-AUAAAAg ||| |||:|||| |||||| uuauUCG-AUUUAUGAUUAUUUUu 2 20 354 376 [dm3:3R:26652121-26652143:+] 0.5022 141 6 -14.05 -1.1321 MIMAT0012195 dme-miR-307-as 43654 CG31012 cugagugaguuggaCCCACACu ||||||| uccgaagagcaaaaGGGUGUGa 2 9 296 317 [dm3:3R:26652063-26652084:+] 0.5022 140 7 -17.67 -1.1033 MIMAT0012216 dme-miR-2501 43654 CG31012 aaucggguCCGUGAGGUUUGAAUg | ::| : ||||||| ucgaugauGAUGCCUAAAACUUAa 2 17 458 481 [dm3:3R:26652225-26652248:+] 0.5022 144 7 -13.02 -0.9709 MIMAT0012216 dme-miR-2501 43654 CG31012 aaucgggucCGUGAGGUUUGA-AUg |:||| :||||| || gaguaaacuGUACUAUAAACUAUAu 2 16 397 421 [dm3:3R:26652164-26652188:+] 0.5022 123 0 -11.78 -0.7612 MIMAT0000105 dme-miR-1 43654 CG31012 gaGGUAUGAAGAAAUGUAAGGu ::|||| : |||||||| uuUUAUACACUCGUACAUUCCg 2 21 278 299 [dm3:3R:26652045-26652066:+] 0.5022 156 7 -19.64 -0.6010 MIMAT0000109 dme-miR-4 43654 CG31012 aguuaccAACAGAUCGAAAua || |||||||| ucgccuuUUAGCUAGCUUUug 3 15 12 32 [dm3:3R:26651779-26651799:+] 0.5611 134 0 -10.73 -0.1761 MIMAT0000335 dme-miR-219 43654 CG31012 guucuuaacgcaaacCUGUUAGu ||||||| agagaccgaacccaaGACAAUCc 2 9 104 126 [dm3:3R:26651871-26651893:+] 0.5376 140 7 -10.14 -0.7260 MIMAT0000347 dme-miR-283 43654 CG31012 ucUUAAUGGUCGACUAUAAAu |: || :| : ||||||| ccAGAUA-UAUUAGAUAUUUa 2 20 39 58 [dm3:3R:26652521-26652540:+] 0.5022 145 7 -9.51 -1.1490 MIMAT0000352 dme-miR-79 43654 CG31012 uacGAAACCAUUAGAUCGAAAu |||| ||: |||||||| cgcCUUU--UAG-CUAGCUUUu 2 20 13 31 [dm3:3R:26651780-26651798:+] 0.5611 154 7 -11.37 -1.1979 MIMAT0000409 dme-miR-317 43654 CG31012 ugaccUAUGGUGGU-CGACACAAGu |||:| :| |||||||| cccaaAUAUCUGUACUCUGUGUUCu 2 20 125 149 [dm3:3R:26651892-26651916:+] 0.5376 154 7 -17.38 -0.4512 MIMAT0005493 dme-miR-977 43654 CG31012 aaucuguuGCACUUAUAGAgu | || |||||| uguauuccCCUGUAUAUCUga 3 14 240 260 [dm3:3R:26652007-26652027:+] 0.5022 129 0 -6.35 -0.1488 MIMAT0005503 dme-miR-986 43654 CG31012 agUCAGUGUUGC-GAUAAGCUcu | |::: :| :||||||| cgAUUUGUUUUGUUUAUUCGAuu 3 21 341 363 [dm3:3R:26652108-26652130:+] 0.5022 127 0 -8.27 -0.1055 MIMAT0005507 dme-miR-137 43654 CG31012 gaugcacauaaGAGUUCGUUAu ||:||||||| gaugccuaaaaCUUAAGCAAUa 2 12 466 487 [dm3:3R:26652233-26652254:+] 0.5022 151 7 -14.42 -1.1470 MIMAT0005516 dme-miR-252 43654 CG31012 gaGGACGCCGUGAUCAUGAAUc :|||: |: || ||||||| acUCUGU-GUUCU-GUACUUAu 2 21 138 157 [dm3:3R:26651905-26651924:+] 0.5376 152 7 -16.94 -0.9957 MIMAT0005024 dme-miR-1011 43654 CG31012 gacgcUCGCUAAACUUGGUUAUu ||| || ||||||| acuuaAGCAAU----ACCAAUAa 2 19 476 494 [dm3:3R:26652243-26652261:+] 0.5022 141 7 -10.25 -1.1784

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score cindr RAID00006079 dme-miR-310-3p miRNA MIMAT0000402 cindr mRNA 43654 Prediction 0.1828 cindr RAID00305782 dme-miR-4-3p miRNA MIMAT0000109 cindr mRNA 43654 Prediction 0.1828 cindr RAID00384021 dme-miR-284-3p miRNA MIMAT0000348 cindr mRNA 43654 Prediction 0.1828 cindr RAID00419300 dme-miR-312-3p miRNA MIMAT0000404 cindr mRNA 43654 Prediction 0.1828 cindr RAID00719845 dme-miR-981-3p miRNA MIMAT0005497 cindr mRNA 43654 Prediction 0.1828 cindr RAID00862353 dme-miR-977-3p miRNA MIMAT0005493 cindr mRNA 43654 Prediction 0.1828 cindr RAID00994955 dme-miR-1-3p miRNA MIMAT0000105 cindr mRNA 43654 Prediction 0.2202 cindr RAID01107436 dme-miR-79-3p miRNA MIMAT0000352 cindr mRNA 43654 Prediction 0.2202 cindr RAID01165252 dme-miR-308-3p miRNA MIMAT0000399 cindr mRNA 43654 Prediction 0.1828 cindr RAID01420969 dme-miR-1011-3p miRNA MIMAT0005024 cindr mRNA 43654 Prediction 0.2202 cindr RAID01438907 dme-miR-92a-3p miRNA MIMAT0000334 cindr mRNA 43654 Prediction 0.1828 cindr RAID01790319 dme-miR-252-5p miRNA MIMAT0005516 cindr mRNA 43654 Prediction 0.2202 cindr RAID02276622 dme-miR-311-3p miRNA MIMAT0000403 cindr mRNA 43654 Prediction 0.1828 cindr RAID02350568 dme-miR-283-5p miRNA MIMAT0000347 cindr mRNA 43654 Prediction 0.1828 cindr RAID02467896 dme-miR-263b-5p miRNA MIMAT0000362 cindr mRNA 43654 Prediction 0.1828 cindr RAID02595211 dme-miR-219-5p miRNA MIMAT0000335 cindr mRNA 43654 Prediction 0.2202 cindr RAID02624514 dme-miR-33-5p miRNA MIMAT0000342 cindr mRNA 43654 Prediction 0.1828 cindr RAID02678461 dme-miR-313-3p miRNA MIMAT0000405 cindr mRNA 43654 Prediction 0.1828 cindr RAID03310371 dme-miR-137-3p miRNA MIMAT0005507 cindr mRNA 43654 Prediction 0.2202 cindr RAID03340772 dme-miR-986-5p miRNA MIMAT0005503 cindr mRNA 43654 Prediction 0.1828 cindr RAID03494432 dme-miR-317-3p miRNA MIMAT0000409 cindr mRNA 43654 Prediction 0.2202 cindr RAID03972785 dme-mir-iab-4 miRNA MI0000432 cindr mRNA 43654 Prediction 0.1828