DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 43751 Acf1 auaguaaaguaUACGUUGCAUUUAUgu || ||| |||||| ggaaacaaacgAUUCAAAAUAAAUAag 3 17 247 273 [dm3:3R:27625507-27625533:+] 0.4434 136 0 -5.18 -0.1189 MIMAT0000364 dme-miR-289 43751 Acf1 ucagcguccgagGUGAAUUUAUAAau ||| ||||||| uauauauuuaagCAC--AAAUAUUaa 3 15 70 93 [dm3:3R:27625330-27625353:+] 0.5008 127 0 -5.50 -0.1124 MIMAT0000364 dme-miR-289 43751 Acf1 ucaGCGUCCGAGGU--GAAUUUAUAAAu ||:|| : | | || |||||| agcCGUAGUUGAAAACCAUAUAUAUUUa 2 24 52 79 [dm3:3R:27625312-27625339:+] 0.4720 122 6 -13.32 -0.1373 MIMAT0005510 dme-miR-992 43751 Acf1 gaaucaUGGUC-UUUGCACAUga ||||| | |||||| aucuccACCAGCUAUCGUGUAaa 3 17 12 34 [dm3:3R:27625272-27625294:+] 0.5048 135 0 -16.41 -0.1140 MIMAT0005018 dme-miR-1005 43751 Acf1 gacgcuuaaUUUCUAAGGUcu :|| |||||| agacacuacGAAAAUUCCAca 3 13 207 227 [dm3:3R:27625467-27625487:+] 0.4543 128 0 -9.12 -0.1434 MIMAT0011784 dme-miR-2279* 43751 Acf1 uuAAAGUGU-GUGUCUAUAAAUu || | | ||:| ||||||| agUUGAAAACCAUAUAUAUUUAa 2 21 58 80 [dm3:3R:27625318-27625340:+] 0.4720 155 7 -10.51 -1.2087 MIMAT0011784 dme-miR-2279* 43751 Acf1 uuAAAGUGUG-UGUCUAUAAAUu | | | || :| :|||||| uuUAUGAGACUUUAUGUAUUUAu 2 21 174 196 [dm3:3R:27625434-27625456:+] 0.4590 131 6 -3.53 -0.1058 MIMAT0012206 dme-miR-2496* 43751 Acf1 augcuaccggaGAGU-GUGUGCGUg :||| |||||||| ucaguucuaagUUCAGCACACGCAu 2 14 125 149 [dm3:3R:27625385-27625409:+] 0.4246 152 7 -20.13 -0.3271 MIMAT0012215 dme-miR-2500 43751 Acf1 gacuccaggUG-UGUGUUUUAgg || |: |||||| cggaaacaaACGAUUCAAAAUaa 3 14 246 268 [dm3:3R:27625506-27625528:+] 0.4434 124 0 -7.53 -0.1307 MIMAT0000109 dme-miR-4 43751 Acf1 aguuACCAACAGAUC-GAAAUa ||||| : || ||||| cuguUGGUUUAUGAGACUUUAu 2 18 167 188 [dm3:3R:27625427-27625448:+] 0.4442 121 0 -10.06 -0.8667 MIMAT0000332 dme-miR-274 43751 Acf1 uaaugggcaaucacagccaGUGUUUu |||||| aaaaccauauauauuuaagCACAAAu 2 8 63 88 [dm3:3R:27625323-27625348:+] 0.5008 120 6 -10.61 -0.2470 MIMAT0000335 dme-miR-219 43751 Acf1 guucuuaacgcaaaccUGUUAGu |||||| acacuacgaaaauuccACAAUCa 2 8 209 231 [dm3:3R:27625469-27625491:+] 0.4543 120 6 -8.18 -0.1211 MIMAT0000347 dme-miR-283 43751 Acf1 ucuuaauggucgacUAUAAAu |||||| guugaaaaccauauAUAUUUa 2 8 59 79 [dm3:3R:27625319-27625339:+] 0.4393 120 6 -7.64 -0.1130 MIMAT0000365 dme-bantam 43751 Acf1 uuagucgaaaguuuuACUAGAGu ||||||| ------gccggacgcUGAUCUCc 2 9 1 17 [dm3:3R:27625261-27625277:+] 0.5048 140 7 -10.81 -0.7320 MIMAT0005030 dme-miR-1017 43751 Acf1 ccUACUCAAACCCAU-CUC-GAAAg || ||| | || ||| |||| uuAUCUGUUGGUUUAUGAGACUUUa 2 22 163 187 [dm3:3R:27625423-27625447:+] 0.4442 120 0 -8.62 -1.0307

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Acf RAID00091591 dme-miR-1-3p miRNA MIMAT0000105 Acf mRNA 43751 Prediction 0.1828 Acf RAID02389548 dme-miR-4-3p miRNA MIMAT0000109 Acf mRNA 43751 Prediction 0.1828 Acf RAID02432756 dme-miR-274-5p miRNA MIMAT0000332 Acf mRNA 43751 Prediction 0.1828 Acf RAID02940055 dme-miR-219-5p miRNA MIMAT0000335 Acf mRNA 43751 Prediction 0.2202 Acf RAID03149105 dme-bantam-3p miRNA MIMAT0000365 Acf mRNA 43751 Prediction 0.2202 Acf RAID03180684 dme-miR-283-5p miRNA MIMAT0000347 Acf mRNA 43751 Prediction 0.1828 Acf RAID03487711 dme-miR-1017-3p miRNA MIMAT0005030 Acf mRNA 43751 Prediction 0.1828