DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005464 dme-miR-iab-4as-3p 33932 CG11070 auuugCAUAUGACUUACAUAGg || | : |||||||: uagugGUUUUUAAAAUGUAUUc 2 18 150 171 [dm3:2L:6661849-6661870:+] 0.4355 133 0 -10.51 -0.1141 MIMAT0005510 dme-miR-992 33932 CG11070 gaaUCAUGGUCU-UUGCACAUGa | || || | ||:|||||| uuaAUUAACAAACAAUGUGUACg 2 20 199 221 [dm3:2L:6661898-6661920:+] 0.4443 146 6 -11.87 -0.1023 MIMAT0005018 dme-miR-1005 33932 CG11070 gacgcuuaAUUUCUAAGGUCu |||: ||||||| uuuguucaUAAGAAUUCCAGu 2 14 93 113 [dm3:2L:6661792-6661812:+] 0.5001 153 7 -13.17 -0.9041 MIMAT0011790 dme-miR-2282 33932 CG11070 uaAGAUAAAAAUCG--AG-UGGCUa || |||||| | || ||||| aaUCCAUUUUUUCCUGUCAACCGAa 2 21 174 198 [dm3:2L:6661873-6661897:+] 0.4120 127 0 -11.92 -1.2027 MIMAT0000114 dme-miR-9a 33932 CG11070 aguauGUCGAUCUAUUGGUUUCu |||:|: |||||||| uggcuCAGUUGCCCAACCAAAGa 2 19 24 46 [dm3:2L:6661723-6661745:+] 0.4956 158 7 -19.13 -0.3231 MIMAT0000392 dme-miR-9c 33932 CG11070 agauGUCGAUCUUAUGGUUUCu |||:|: ||||||| ggcuCAGUUGCCCAACCAAAGa 2 19 25 46 [dm3:2L:6661724-6661745:+] 0.5359 150 7 -19.78 -0.3888 MIMAT0000395 dme-miR-9b 33932 CG11070 guAUG-UCGAUUUUA---G-UGGUUUCu |:| :||| |: | | ||||||| gcUGCUGGCUCAGUUGCCCAACCAAAGa 2 22 19 46 [dm3:2L:6661718-6661745:+] 0.4956 142 7 -18.36 -0.3285 MIMAT0000398 dme-miR-307 33932 CG11070 gaGUGAGUUCCUCCA-ACACu ||: || || ||| |||| guCAUACAUGGUGGUAUGUGu 2 19 112 132 [dm3:2L:6661811-6661831:+] 0.5001 126 0 -16.65 -0.4506 MIMAT0000409 dme-miR-317 33932 CG11070 ugaccUAUGGUGGUCGACACAAGu |||:: :||||||| uagucAUAUUUGGUUUUGUGUUCa 2 20 248 271 [dm3:2L:6661947-6661970:+] 0.4359 143 7 -18.81 -1.1766 MIMAT0005492 dme-miR-976 33932 CG11070 cguaacUAC-UAUUGAUUAGGUu ||| || :||||||| uuuaaaAUGUAUUCUUAAUCCAu 2 17 158 180 [dm3:2L:6661857-6661879:+] 0.4355 151 7 -11.12 -1.0154 MIMAT0005016 dme-miR-1003 33932 CG11070 gaCACUUAUACAUUUACAC-UCu ||| :|||||: ||||| || ugGUG-GUAUGUGUAUGUGCAGu 2 21 120 141 [dm3:2L:6661819-6661840:+] 0.4957 134 0 -19.27 -1.0226 MIMAT0005017 dme-miR-1004 33932 CG11070 gacaCUCCCUUCAC-UACAC-UCu | || | ||| ||||| || caugGUGGUAUGUGUAUGUGCAGu 2 19 118 141 [dm3:2L:6661817-6661840:+] 0.4957 121 0 -16.62 -1.0282

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG11070 RAID00134376 dme-miR-317-3p miRNA MIMAT0000409 CG11070 mRNA 33932 Prediction 0.2202 CG11070 RAID00297845 dme-miR-307a-3p miRNA MIMAT0000398 CG11070 mRNA 33932 Prediction 0.1828 CG11070 RAID00935714 dme-miR-9b-5p miRNA MIMAT0000395 CG11070 mRNA 33932 Prediction 0.2202 CG11070 RAID01183298 dme-miR-9c-5p miRNA MIMAT0000392 CG11070 mRNA 33932 Prediction 0.2381 CG11070 RAID01699033 dme-miR-976-3p miRNA MIMAT0005492 CG11070 mRNA 33932 Prediction 0.2202 CG11070 RAID02484850 dme-miR-973-5p miRNA MIMAT0005489 CG11070 mRNA 33932 Prediction 0.1828 CG11070 RAID02981340 dme-miR-1003-3p miRNA MIMAT0005016 CG11070 mRNA 33932 Prediction 0.1828 CG11070 RAID03097305 dme-miR-9a-5p miRNA MIMAT0000114 CG11070 mRNA 33932 Prediction 0.2202 CG11070 RAID03404091 dme-miR-1004-3p miRNA MIMAT0005017 CG11070 mRNA 33932 Prediction 0.1828 CG11070 RAID03848687 dme-miR-1005-3p miRNA MIMAT0005018 CG11070 mRNA 33932 Prediction 0.1828