DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 38489 Ack uggucauGGACUA-CAUUAUGAGu |:| || ||||||| aucgaauCUUUAUCAAAAUACUCc 2 17 91 114 [dm3:3L:4113878-4113901:+] 0.5451 143 7 -9.40 -0.8910 MIMAT0000364 dme-miR-289 38489 Ack ucAGCGUCCGAGGUGAAUUUAUAAAu || || : || | :||||||| uuUCUGAGAUGCCCC--GAAUAUUUu 2 25 223 246 [dm3:3L:4114010-4114033:+] 0.5451 149 7 -7.81 -0.3316 MIMAT0005464 dme-miR-iab-4as-3p 38489 Ack auUUGCAUAUGACU--UACAUAGg ||| || :|| | ||||||| uaAACUUA-GCUAACGAUGUAUCg 2 21 72 94 [dm3:3L:4113859-4113881:+] 0.5451 153 7 -10.43 -0.6917 MIMAT0005488 dme-miR-972 38489 Ack cggAUUU-AUAAGC-AUAAC-AUGu |||| ||| :| |||| ||| gaaUAAAUUAUAUGAAAUUGUUACa 2 20 347 371 [dm3:3L:4114134-4114158:+] 0.5940 121 0 -7.26 -1.3010 MIMAT0011784 dme-miR-2279* 38489 Ack uuaaagugugugucuAUAAAUu |||||| cuguacaauuuguucUAUUUAa 2 8 151 172 [dm3:3L:4113938-4113959:+] 0.5451 120 6 -5.69 -0.2041 MIMAT0011786 dme-miR-2280 38489 Ack uauAAAAUAACGGUUCGAUUcu ||||| |: |||||| uucUUUUA-AACUUAGCUAAcg 3 20 66 86 [dm3:3L:4113853-4113873:+] 0.5451 133 0 -7.78 -0.1074 MIMAT0011791 dme-miR-2283 38489 Ack uaacagcauaaguacUAUAAAAg ||||||| ucugagaugccccgaAUAUUUUa 2 9 225 247 [dm3:3L:4114012-4114034:+] 0.5451 140 7 -2.68 -0.8196 MIMAT0011791 dme-miR-2283 38489 Ack uaacAGCAUAAGUACUAUAAAAg ||||| | | |||||| gcgaUCGUA-UAAAAUUAUUUUa 2 20 178 199 [dm3:3L:4113965-4113986:+] 0.5451 125 6 -8.62 -0.2981 MIMAT0012197 dme-miR-2490 38489 Ack aacgUUGGACGAAAUAGCGAAGu :|||| | | ||||||| ugaaGACCU-CGGU-UCGCUUCg 2 20 275 295 [dm3:3L:4114062-4114082:+] 0.5451 147 7 -18.72 -0.1586 MIMAT0012207 dme-miR-2496 38489 Ack auacgcACACACUC-ACGGGGCg | | |||| ||||||| ccgcauUUUCUGAGAUGCCCCGa 2 17 217 239 [dm3:3L:4114004-4114026:+] 0.5451 155 7 -21.63 -1.0961 MIMAT0012216 dme-miR-2501 38489 Ack aaucggguccguGAGGUUUGAAUg :|::||||||| ugcugaauauucUUUUAAACUUAg 2 13 57 80 [dm3:3L:4113844-4113867:+] 0.4523 148 7 -10.91 -0.8217 MIMAT0000406 dme-miR-314 38489 Ack ggcuugAAUAACCGAGCUUAu ||| | ||||||| cauguaUUACCGCCUCGAAUg 2 16 17 37 [dm3:3L:4113804-4113824:+] 0.3596 151 7 -13.35 -0.7202 MIMAT0000406 dme-miR-314 38489 Ack ggcuUGAAUAACCGAGCUUAu |:||:|| |||||| auucAUUUGUU-UAUCGAAUa 2 18 332 351 [dm3:3L:4114119-4114138:+] 0.5940 123 6 -12.44 -0.3983 MIMAT0000406 dme-miR-314 38489 Ack ggcuugaauaaccgAGCUUAu |||||| uagcuaacgauguaUCGAAUc 2 8 78 98 [dm3:3L:4113865-4113885:+] 0.5451 120 6 -10.55 -0.1489 MIMAT0000407 dme-miR-315 38489 Ack cgaaagacucguuguUAGUUUu |||||| auguaucgaaucuuuAUCAAAa 2 8 87 108 [dm3:3L:4113874-4113895:+] 0.5451 120 6 -6.25 -0.1260 MIMAT0005469 dme-miR-956 38489 Ack uuaccuaaucucaccaGAGCUUu |||||| gaauauuuuauucacaCUCGAAa 2 8 238 260 [dm3:3L:4114025-4114047:+] 0.5451 120 6 -10.60 -0.1144 MIMAT0005474 dme-miR-960 38489 Ack cgAUACGUUAGA-----CCUUAUGAGu ||| ||||| ||||||| ugUAUCGAAUCUUUAUCAAAAUACUCc 2 21 88 114 [dm3:3L:4113875-4113901:+] 0.5451 143 7 -8.50 -0.8910 MIMAT0005023 dme-miR-1010 38489 Ack gacgUUUACCUUGCUAUCCACUUu |||| | : |||||||| aucaAAAU--ACUCCUAGGUGAAu 2 21 102 123 [dm3:3L:4113889-4113910:+] 0.5451 149 7 -12.10 -0.5676

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ack RAID00472346 dme-miR-33-5p miRNA MIMAT0000342 Ack mRNA 38489 Prediction 0.1828 Ack RAID00830469 dme-miR-12-5p miRNA MIMAT0000117 Ack mRNA 38489 Prediction 0.1828 Ack RAID00928083 dme-miR-284-3p miRNA MIMAT0000348 Ack mRNA 38489 Prediction 0.1828 Ack RAID01207069 dme-miR-1013-3p miRNA MIMAT0005026 Ack mRNA 38489 Prediction 0.1828 Ack RAID01636496 dme-miR-956-3p miRNA MIMAT0005469 Ack mRNA 38489 Prediction 0.2202 Ack RAID01870540 dme-miR-315-5p miRNA MIMAT0000407 Ack mRNA 38489 Prediction 0.2202 Ack RAID02026459 dme-miR-966-5p miRNA MIMAT0005481 Ack mRNA 38489 Prediction 0.1828 Ack RAID02267381 dme-miR-314-3p miRNA MIMAT0000406 Ack mRNA 38489 Prediction 0.2202 Ack RAID02419914 dme-miR-1010-3p miRNA MIMAT0005023 Ack mRNA 38489 Prediction 0.2202 Ack RAID02845907 dme-miR-960-5p miRNA MIMAT0005474 Ack mRNA 38489 Prediction 0.2381 Ack RAID03995582 dme-miR-1016-3p miRNA MIMAT0005029 Ack mRNA 38489 Prediction 0.1828