DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 37126 CG30116 ugGUCAUGGA-CUACAUUAUGAGu ||| | :| ||| ||||||: uuCAGCAAUUAAAUGGAAUACUUa 2 22 8 31 [dm3:2R:14345032-14345055:-] 0.6611 144 0 -12.91 -0.1939 MIMAT0000344 dme-miR-281-1* 37126 CG30116 ugACAGCUGCCUG-UCGAGAGAa || ||: || |||||||| uaUGCAGAU--ACGAGCUCUCUa 2 21 307 327 [dm3:2R:14344736-14344756:-] 0.6016 148 7 -15.35 -1.0428 MIMAT0000364 dme-miR-289 37126 CG30116 ucAGCGUC-CGAGGUGAAUUU--AUAAAu || ||| || ||||||| ||||| uuUCCCAGUAGUCAACUUAAACGUAUUUa 2 25 125 153 [dm3:2R:14347205-14347233:-] 0.6045 127 0 -13.26 -1.3190 MIMAT0000394 dme-miR-306* 37126 CG30116 cguguccgugucUCACUGGGgg | |||||| aauguuaauuguAUUGACCCaa 3 11 252 273 [dm3:2R:14344790-14344811:-] 0.6016 122 0 -10.59 -0.2271 MIMAT0005475 dme-miR-961 37126 CG30116 uaGAGUCAAUGACCACUAGUUu ||:|| | | ||||||| aaCUUAG--AAU-CUGAUCAAa 2 21 283 301 [dm3:2R:14344762-14344780:-] 0.6016 143 7 -13.39 -1.0107 MIMAT0005481 dme-miR-966 37126 CG30116 ggUGUGUCGGGUGU-UGGGUGu |:: | :||||| |||||| uaAUGAAAUCCACACACCCACa 2 20 380 401 [dm3:2R:14344662-14344683:-] 0.4832 131 6 -23.16 -0.8601 MIMAT0005491 dme-miR-975 37126 CG30116 uaugucCUACAUCCUUCACAAAu | ||||| ||||||| uuuauuGUUGUAG--AGUGUUUu 2 18 208 228 [dm3:2R:14344835-14344855:-] 0.6016 154 7 -11.68 -0.9204 MIMAT0005499 dme-miR-983 37126 CG30116 aguaaucaagcUUUGCAUAAua ||||||||| guagucaacuuAAACGUAUUua 3 12 132 153 [dm3:2R:14347205-14347226:-] 0.6045 135 0 -10.53 -0.4612 MIMAT0005502 dme-miR-985 37126 CG30116 acgggcUGGUAACCUUGUAAAc :|| || ||||||| aaguaaGCCCUU-UAACAUUUa 2 17 182 202 [dm3:2R:14344861-14344881:-] 0.6016 146 7 -9.24 -1.2327 MIMAT0005028 dme-miR-1015 37126 CG30116 gacguucUCUCUACAGGGUCcu || :| |||||| caugccuAGUUGUUUCCCAGua 3 16 113 134 [dm3:2R:14347224-14347245:-] 0.6045 127 0 -13.24 -0.1591 MIMAT0011784 dme-miR-2279* 37126 CG30116 uuaaAG-UGUGUGUCUAUAAAUu || || :| | :|||||| guagUCAACUUAAACGUAUUUAu 2 19 132 154 [dm3:2R:14347204-14347226:-] 0.6045 137 6 -4.76 -0.2034 MIMAT0011786 dme-miR-2280 37126 CG30116 uaUA-AAAUA-ACGGUUCGAUUcu || | ||| | |:||||||| gaAUGUAUAUAUACUAAGCUAAua 3 21 456 479 [dm3:2R:14344584-14344607:-] 0.5206 142 0 -10.09 -0.1246 MIMAT0011791 dme-miR-2283 37126 CG30116 uaacagcauaaguacuAUAAAAg |||||| ucaacuuaaacguauuUAUUUUa 2 8 136 158 [dm3:2R:14347200-14347222:-] 0.6045 120 6 -9.47 -0.4752 MIMAT0012208 dme-miR-2497* 37126 CG30116 uuguugauguaaaacGUUACGAAUg | ||||||| ggguaaaaagcguaaCUAUGCUUAa 2 11 331 355 [dm3:2R:14344708-14344732:-] 0.6016 142 7 -10.00 -1.0085 MIMAT0012209 dme-miR-2497 37126 CG30116 gacGUUU-GUAAC-AUUUACAAca |||: || | |||||||| uacCAAGCCAGAGCUAAAUGUUaa 3 20 236 259 [dm3:2R:14344804-14344827:-] 0.6016 137 0 -8.31 -0.1002 MIMAT0012211 dme-miR-2498 37126 CG30116 uuCAUU-CUGCCCUUACGG-UCAAa |||: :|| ||||| |||| acGUAGUUUUGGCCAUGCCUAGUUg 2 22 100 124 [dm3:2R:14347234-14347258:-] 0.6045 120 0 -16.23 -0.8815 MIMAT0012216 dme-miR-2501 37126 CG30116 aaucGGGUCCGUGAGGU-UUGAAUg |||| || | | |||||| uugaCCCAAUAACGCAAUAACUUAg 2 21 265 289 [dm3:2R:14344774-14344798:-] 0.6016 124 6 -13.92 -1.0074 MIMAT0000108 dme-miR-3 37126 CG30116 acucugugugaAACGGGUCAcu || |||||| augccuaguugUUUCCCAGUag 3 12 114 135 [dm3:2R:14347223-14347244:-] 0.6045 127 0 -11.21 -0.1094 MIMAT0000335 dme-miR-219 37126 CG30116 guucUUAACGCAAACCUGUUAGu ||| | || ||||||| cuucAAUAACUUUCUGACAAUCa 2 20 548 570 [dm3:2R:14344493-14344515:-] 0.5206 155 7 -10.89 -1.0215 MIMAT0000348 dme-miR-284 37126 CG30116 guuAACGACCUUAGUUCAACGAC-UGAAGu || :| |::||| | :|| ||||| cacUUUUUCGGGUCACGGGCUUGCACUUCc 2 27 507 536 [dm3:2R:14344527-14344556:-] 0.5206 130 0 -15.11 -0.5110 MIMAT0000349 dme-miR-281-2* 37126 CG30116 ugacagcUGCCUA---UCGAGAGAa :| ||| |||||||| gcgauauGCAGAUACGAGCUCUCUa 2 16 303 327 [dm3:2R:14344736-14344760:-] 0.6016 146 7 -16.20 -1.0428 MIMAT0000401 dme-miR-309 37126 CG30116 aucCUGUUUGA-AAUGGGUCAcg | | |::| || |||||| cauGCCUAGUUGUUUCCCAGUag 3 20 113 135 [dm3:2R:14347223-14347245:-] 0.6045 134 0 -11.46 -0.1073 MIMAT0000406 dme-miR-314 37126 CG30116 ggCUUGAAU---AACCGAGCUUAu |::|||: || ||||||| acGGGCUUGCACUUCCCUCGAAUa 2 20 521 544 [dm3:2R:14344519-14344542:-] 0.5206 150 7 -20.74 -0.4160 MIMAT0000410 dme-miR-318 37126 CG30116 acucuAUUUGUUUCGGGUCAcu ||: :: |||||| augccUAGUUGUUUCCCAGUag 3 18 114 135 [dm3:2R:14347223-14347244:-] 0.6045 121 0 -11.11 -0.1083 MIMAT0005471 dme-miR-958 37126 CG30116 uuucaucUUAU--CUUCUUAGAgu |||| ||||||| auaacgcAAUAACUUAGAAUCUga 3 16 273 296 [dm3:2R:14344767-14344790:-] 0.6016 126 0 -8.11 -0.1430 MIMAT0005474 dme-miR-960 37126 CG30116 cgauaCGUUAG---ACCUUAUGAGu |||||: |||||||||: auucaGCAAUUAAAUGGAAUACUUa 2 18 7 31 [dm3:2R:14345032-14345056:-] 0.6611 148 0 -20.29 -0.1921 MIMAT0005483 dme-miR-1002 37126 CG30116 agcgggaaACAUAG--GUGAUGAAUu || | | ||:|||||| aacacaagUGAAACAACAUUACUUAa 2 17 357 382 [dm3:2R:14344681-14344706:-] 0.6016 135 6 -12.02 -0.1449 MIMAT0005504 dme-miR-987 37126 CG30116 guaGUUAGGUCUGAU-AAAUGAAau ||| : | || | |||||| acaCAAGUGAAACAACAUUACUUaa 3 22 358 382 [dm3:2R:14344681-14344705:-] 0.6016 132 0 -5.22 -0.1100 MIMAT0005504 dme-miR-987 37126 CG30116 guAGUUAGGUCUG-AUAAAUGAAAu |||| ::| || ||||||:||| agUCAACUUAAACGUAUUUAUUUUa 2 23 134 158 [dm3:2R:14347200-14347224:-] 0.6045 161 0 -15.97 -0.1541 MIMAT0005507 dme-miR-137 37126 CG30116 gaugcacaUAAGAGUUCGUUAu || | |||||||| uauccaaaAUGC-CAAGCAAUa 2 15 30 50 [dm3:2R:14345013-14345033:-] 0.6611 148 7 -11.79 -0.8455 MIMAT0005507 dme-miR-137 37126 CG30116 gaUGCACAUAAGAGUUCGUUAu || | | || ||||||| uaACUAGGAAACU-AAGCAAUu 2 21 435 455 [dm3:2R:14344608-14344628:-] 0.4427 146 7 -9.59 -0.5149 MIMAT0005507 dme-miR-137 37126 CG30116 gaUGCACAUA-AGAGUUCG-UUAu |:|| ||| | :|||| ||| gaAUGUAUAUAUACUAAGCUAAUa 2 21 456 479 [dm3:2R:14344584-14344607:-] 0.5206 123 0 -9.66 -1.1486 MIMAT0005507 dme-miR-137 37126 CG30116 gaugcacauaagaguUCGUUAu |||||| -----gaccugauucAGCAAUu 2 8 1 17 [dm3:2R:14345046-14345062:-] 0.6611 120 6 -8.97 -0.2564 MIMAT0005516 dme-miR-252 37126 CG30116 gaggacgccgugaucAUGAAUc |||||| caagugaaacaacauUACUUAa 2 8 361 382 [dm3:2R:14344681-14344702:-] 0.6016 120 6 -6.63 -0.1477

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG30116 RAID00149021 dme-miR-958-3p miRNA MIMAT0005471 CG30116 mRNA 37126 Prediction 0.2202 CG30116 RAID00270920 dme-miR-252-5p miRNA MIMAT0005516 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID00338285 dme-miR-927-5p miRNA MIMAT0005501 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID00395998 dme-miR-960-5p miRNA MIMAT0005474 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID00655204 dme-miR-79-3p miRNA MIMAT0000352 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID00909623 dme-mir-iab-4 miRNA MI0000432 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID00925790 dme-miR-284-3p miRNA MIMAT0000348 CG30116 mRNA 37126 Prediction 0.2381 CG30116 RAID01104935 dme-miR-1012-3p miRNA MIMAT0005025 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID01159758 dme-miR-1001-5p miRNA MIMAT0005521 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID01200701 dme-miR-975-5p miRNA MIMAT0005491 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID01225682 dme-miR-1006-3p miRNA MIMAT0005019 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID01232279 dme-miR-984-5p miRNA MIMAT0005500 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID01256717 dme-miR-309-3p miRNA MIMAT0000401 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID01262149 dme-miR-281-2-5p miRNA MIMAT0000349 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID01377110 dme-miR-1-3p miRNA MIMAT0000105 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID01484398 dme-let-7-5p miRNA MIMAT0000396 CG30116 mRNA 37126 Prediction 0.2202 CG30116 RAID01746928 dme-miR-1002-5p miRNA MIMAT0005483 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID02016749 dme-miR-219-5p miRNA MIMAT0000335 CG30116 mRNA 37126 Prediction 0.2202 CG30116 RAID02087885 dme-miR-310-3p miRNA MIMAT0000402 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID02223407 dme-miR-964-5p miRNA MIMAT0005478 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID02310684 dme-miR-3-3p miRNA MIMAT0000108 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID02450137 dme-miR-318-3p miRNA MIMAT0000410 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID02454718 dme-miR-137-3p miRNA MIMAT0005507 CG30116 mRNA 37126 Prediction 0.2202 CG30116 RAID02536938 dme-miR-311-3p miRNA MIMAT0000403 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID02555155 dme-miR-1007-3p miRNA MIMAT0005020 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID02571316 dme-miR-33-5p miRNA MIMAT0000342 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID02599331 dme-miR-987-5p miRNA MIMAT0005504 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID02984921 dme-miR-312-3p miRNA MIMAT0000404 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID02994847 dme-miR-994-5p miRNA MIMAT0005513 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID03026794 dme-miR-5-5p miRNA MIMAT0000110 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID03077124 dme-miR-92b-3p miRNA MIMAT0000358 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID03428255 dme-miR-313-3p miRNA MIMAT0000405 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID03437897 dme-miR-1009-3p miRNA MIMAT0005022 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID03489760 dme-miR-283-5p miRNA MIMAT0000347 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID03591402 dme-miR-993-3p miRNA MIMAT0005512 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID03864637 dme-miR-314-3p miRNA MIMAT0000406 CG30116 mRNA 37126 Prediction 0.1828 CG30116 RAID03955295 dme-miR-92a-3p miRNA MIMAT0000334 CG30116 mRNA 37126 Prediction 0.1828