DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 38846 lqf gcCCCGCUCUCUUACUAUUcc | |: | |||||||| aaGAGUAACUUAAUGAUAAac 3 20 1012 1032 [dm3:3L:7531147-7531167:+] 0.5832 131 0 -7.85 -0.2329 MIMAT0000364 dme-miR-289 38846 lqf ucAGCGUCCGAGGU---GAAU--UUAUAAAu |:||| || || :||| |||||| acUUGCAAACUGCAAAUUUUAAGCAUAUUUu 2 25 1188 1218 [dm3:3L:7531323-7531353:+] 0.5832 126 6 -10.91 -0.1483 MIMAT0000388 dme-miR-303 38846 lqf uggucaaAGGACACUUUGGAUUu || || ||||||| agaucaaUCGAGUCCAACCUAAu 2 17 542 564 [dm3:3L:7530677-7530699:+] 0.4770 148 7 -11.95 -0.2021 MIMAT0005465 dme-miR-954 38846 lqf ugUGU-GUUGCGUUGUGGGUCu ||| ||||| |||||||| aaACAGCAACG--ACACCCAGc 2 20 287 306 [dm3:3L:7530422-7530441:+] 0.5661 163 7 -24.83 -0.4420 MIMAT0005488 dme-miR-972 38846 lqf cggAUUUAUAAGCA-UAACAUgu || :|: |:|| |||||| uuaUAUGUGCUUGUAAUUGUAaa 3 20 651 673 [dm3:3L:7530786-7530808:+] 0.6071 138 0 -8.71 -0.2250 MIMAT0005489 dme-miR-973 38846 lqf uuUUAGCUU-CAAGUUGGUGGUUGGu |||: || | :|| ||||||| auAAUUAAAUCUGUAAAAACCAACCc 2 24 376 401 [dm3:3L:7530511-7530536:+] 0.5661 158 7 -14.76 -1.0075 MIMAT0005502 dme-miR-985 38846 lqf acgggcUGGUAACCUUGUAAAc :|::|| |||||||| gaguuuGCUGUU-GAACAUUUu 2 17 852 872 [dm3:3L:7530987-7531007:+] 0.5285 154 7 -14.11 -0.3318 MIMAT0005502 dme-miR-985 38846 lqf acgGGCUGGUAACCU-UGUAAAc :|||:: || | |||||| cuaUCGAUUUUUAAACACAUUUu 2 20 752 774 [dm3:3L:7530887-7530909:+] 0.5285 123 6 -9.31 -1.0470 MIMAT0005509 dme-miR-991 38846 lqf ugAAAGGUUUGAUG---UUGAAAUu |||:|| |:||: ||||||| uaUUUUCAUAUUAUUAAAACUUUAu 2 21 1213 1237 [dm3:3L:7531348-7531372:+] 0.5832 163 7 -11.45 -1.3120 MIMAT0011784 dme-miR-2279* 38846 lqf uuAAAGUGUGUGUCUAU-AAAUu |||:|:| :|: ||| |||| auUUUUAUA-GCGAAUAGUUUAa 2 21 868 889 [dm3:3L:7531003-7531024:+] 0.5285 126 0 -7.41 -1.2255 MIMAT0011784 dme-miR-2279* 38846 lqf uuAAAGUGUGUGUCUAUAAAuu |||:| :| |||||| aaUUUUAAGC----AUAUUUuc 3 21 1202 1219 [dm3:3L:7531337-7531354:+] 0.5832 123 0 -4.30 -0.1354 MIMAT0011787 dme-miR-2280* 38846 lqf agucaauCGAACCU--UCAUUUAa ||||| | |||||| uauauguGCUUGUAAUUGUAAAUu 2 16 652 675 [dm3:3L:7530787-7530810:+] 0.6071 122 6 -9.85 -0.1544 MIMAT0011791 dme-miR-2283 38846 lqf uaacagcauAAGUAC-UAUAAAAg ||:| | ||||||| acugcaaauUUUAAGCAUAUUUUc 2 15 1196 1219 [dm3:3L:7531331-7531354:+] 0.5832 149 7 -6.07 -0.9090 MIMAT0011791 dme-miR-2283 38846 lqf uaacagcauaaguacuAUAAAAg |||||| cauauuauuaaaacuuUAUUUUa 2 8 1219 1241 [dm3:3L:7531354-7531376:+] 0.5832 120 6 -1.24 -0.1261 MIMAT0012195 dme-miR-307-as 38846 lqf cugagugaguuggacCCACACu |||||| aaagaaagccgauucGGUGUGa 2 8 1059 1080 [dm3:3L:7531194-7531215:+] 0.5832 120 6 -16.43 -0.1523 MIMAT0012196 dme-miR-2489 38846 lqf ugACGUUUAUGUUGUAUGUUAu ||||:| || | ||||||| guUGCAGAAACCAAAUACAAUu 2 21 715 736 [dm3:3L:7530850-7530871:+] 0.5285 172 7 -15.65 -0.9324 MIMAT0012196 dme-miR-2489 38846 lqf ugAC-GUUUAUGUUGUAUGU-UAu || :||| | ||:||||| || aaUGAUAAACAAAAUAUACAUAUa 2 21 1023 1046 [dm3:3L:7531158-7531181:+] 0.5832 131 0 -8.87 -1.3054 MIMAT0012199 dme-miR-2492 38846 lqf aaaCUUUCGAGAGCUGUUUUGUa |||| || |||||||| aucGAAAACU-AAAACAAAACAa 2 21 942 963 [dm3:3L:7531077-7531098:+] 0.5285 154 7 -10.94 -1.2829 MIMAT0012208 dme-miR-2497* 38846 lqf uuGUUGAUGUAAAACGU---UACGAAUg |:|:| |: | || | ||||||| gcCGAUU-CGGUGUGAAAUUAUGCUUAa 2 24 1066 1092 [dm3:3L:7531201-7531227:+] 0.5832 148 7 -14.04 -1.1497 MIMAT0012214 dme-miR-2500* 38846 lqf ccauaacauauacacacAAGGAAUg ||||||| ugucagucuucaaguacUUCCUUAg 2 9 449 473 [dm3:3L:7530584-7530608:+] 0.3870 140 7 -7.04 -0.1443 MIMAT0012215 dme-miR-2500 38846 lqf gacuccaggUGUGUGUUUUAgg |:| ||||||| aacuuaaugAUAAACAAAAUau 3 14 1018 1039 [dm3:3L:7531153-7531174:+] 0.5832 133 0 -5.93 -0.1485 MIMAT0012215 dme-miR-2500 38846 lqf gacuccaggUG-UGUGUUUUAgg || | ||||||| aaaacuaaaACAAAACAAAAUaa 3 14 946 968 [dm3:3L:7531081-7531103:+] 0.5559 128 0 -7.03 -0.2055 MIMAT0012216 dme-miR-2501 38846 lqf aaucGGGUCCGUGAGGUUUGAAug ::|| : |: |||||| uauuUUCAUAUUAUUAAAACUUua 3 21 1213 1236 [dm3:3L:7531348-7531371:+] 0.5832 124 0 -8.82 -0.2397 MIMAT0012216 dme-miR-2501 38846 lqf aaucggguccgugagguUUGAAUg |||||| acgaauuguauaagaguAACUUAa 2 8 1001 1024 [dm3:3L:7531136-7531159:+] 0.5832 120 6 -7.51 -0.1388 MIMAT0012217 dme-miR-2501* 38846 lqf uuUCUUUCAAACUAACGUUCUCa | |:| |||| |||||| acAAAGAACAAGAUUACAAGAGc 2 22 917 939 [dm3:3L:7531052-7531074:+] 0.5285 129 6 -14.31 -0.1459 MIMAT0000109 dme-miR-4 38846 lqf agUUACCAACAGAUCGAAAUa ||| ||| | |||||||| aaAAUUGUUAUAUAGCUUUAa 2 20 584 604 [dm3:3L:7530719-7530739:+] 0.5304 171 7 -10.08 -1.2414 MIMAT0000113 dme-miR-8 38846 lqf cuguagaaauggacugUCAUAAu |||||| aaauuauguguaaggaAGUAUUa 2 8 188 210 [dm3:3L:7530323-7530345:+] 0.5661 120 6 -9.07 -0.1302 MIMAT0000334 dme-miR-92a 38846 lqf uaUCCGGCCCUGUUCACGUUAc || |: ||| |||||| ugAGUCUAACACAUUUGCAAUa 2 21 357 378 [dm3:3L:7530492-7530513:+] 0.5661 124 6 -8.72 -0.2086 MIMAT0000347 dme-miR-283 38846 lqf ucuuaauggucgacUAUAAAu |||||| ugcaaauuuuaagcAUAUUUu 2 8 1198 1218 [dm3:3L:7531333-7531353:+] 0.5832 120 6 -5.61 -0.1483 MIMAT0000352 dme-miR-79 38846 lqf uacgaaACCAUUAGAUCGAAAu | || || ||||||| aaaaaaUUGUUAUAUAGCUUUa 2 17 582 603 [dm3:3L:7530717-7530738:+] 0.5304 156 7 -10.15 -1.2450 MIMAT0000358 dme-miR-92b 38846 lqf cguccggcccugaucACGUUAa |||||| ugagucuaacacauuUGCAAUa 2 8 357 378 [dm3:3L:7530492-7530513:+] 0.5661 120 6 -5.86 -0.2086 MIMAT0000402 dme-miR-310 38846 lqf uuuccggcccuucacACGUUAu |||||| ugagucuaacacauuUGCAAUa 2 8 357 378 [dm3:3L:7530492-7530513:+] 0.5661 120 6 -7.46 -0.2086 MIMAT0000403 dme-miR-311 38846 lqf aguccggccacuuacACGUUAu |||||| ugagucuaacacauuUGCAAUa 2 8 357 378 [dm3:3L:7530492-7530513:+] 0.5661 120 6 -7.72 -0.2086 MIMAT0000404 dme-miR-312 38846 lqf agUCCGGCAGAGUUCACGUUAu || |: | || |||||| ugAGUCUAACACAUUUGCAAUa 2 21 357 378 [dm3:3L:7530492-7530513:+] 0.5661 124 6 -11.44 -0.2067 MIMAT0000405 dme-miR-313 38846 lqf agcccgacacuuuucACGUUAu |||||| ugagucuaacacauuUGCAAUa 2 8 357 378 [dm3:3L:7530492-7530513:+] 0.5661 120 6 -6.55 -0.2029 MIMAT0000407 dme-miR-315 38846 lqf cgaaaGACUCGUUGUUAGUUUu || | ::|:|| |||| aguaaCUUAAUGAUAAACAAAa 2 18 1015 1036 [dm3:3L:7531150-7531171:+] 0.5832 125 0 -7.66 -0.1371 MIMAT0005463 dme-miR-iab-4as-5p 38846 lqf gcCAUAUGGAAGUC--A---UAUGCAUu |||||| ||:|| | ||||||| ugGUAUACAUUUAGGCUAGAAUACGUAa 2 22 974 1001 [dm3:3L:7531109-7531136:+] 0.5832 163 7 -23.62 -1.1079 MIMAT0005467 dme-miR-190 38846 lqf guUGGUUCUUAUAGUUUGUAUAga |: || || || | |||||| ugAUAAACAAAAU-AUACAUAUau 3 23 1025 1047 [dm3:3L:7531160-7531182:+] 0.5832 140 0 -7.32 -0.2178 MIMAT0005472 dme-miR-375 38846 lqf auUGAAUUCGGUUUGCUUGUUu || || | || |||||| acACAUAUAC--AAAGAACAAg 2 21 909 928 [dm3:3L:7531044-7531063:+] 0.5285 121 6 -10.64 -0.1129 MIMAT0005477 dme-miR-963 38846 lqf cuUUGUUGGACUAUAAAUG-GAACa || ||:| | || ||| |||| ccAAAAAUC--ACAUAUACACUUGc 2 23 1171 1193 [dm3:3L:7531306-7531328:+] 0.5832 123 0 -6.90 -1.0702 MIMAT0005501 dme-miR-927 38846 lqf ccAUUUCGCAUCCUUAAGAUUu |||| | | |||:||| auUAAAACUU---UAUUUUAAc 2 21 1225 1243 [dm3:3L:7531360-7531378:+] 0.5832 128 0 -1.18 -0.1303 MIMAT0005513 dme-miR-994 38846 lqf uagugccGAUGAUAAAGGAAUc | | || ||||||| cagucuuCAAGUACUUCCUUAg 2 16 452 473 [dm3:3L:7530587-7530608:+] 0.3870 151 7 -13.35 -0.1443 MIMAT0005016 dme-miR-1003 38846 lqf gacacUUAUACAUU---UACACUCu |||||||:| ||||||| uguaaAAUAUGUGAUGUAUGUGAGa 2 18 217 241 [dm3:3L:7530352-7530376:+] 0.5661 164 7 -19.81 -1.0659 MIMAT0005017 dme-miR-1004 38846 lqf gacacuCCCUUCACUACACUCu | || || ||||||| aaauauGUGAUGU-AUGUGAGa 2 17 221 241 [dm3:3L:7530356-7530376:+] 0.5661 150 7 -17.01 -1.0483 MIMAT0005027 dme-miR-1014 38846 lqf gaCGUUUACUUU-UACUUAAaa | :|: |||| ||||||| caGAGAGGGAAAUAUGAAUUaa 3 20 161 182 [dm3:3L:7530296-7530317:+] 0.5661 142 0 -8.72 -0.2700 MIMAT0005030 dme-miR-1017 38846 lqf ccuacucaaacccaucUCGAAAg |||||| aaaaaaauuguuauauAGCUUUa 2 8 581 603 [dm3:3L:7530716-7530738:+] 0.5304 120 6 -5.77 -0.2116

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score lqf RAID00230646 dme-miR-991-3p miRNA MIMAT0005509 lqf mRNA 38846 Prediction 0.1828 lqf RAID00258988 dme-miR-927-5p miRNA MIMAT0005501 lqf mRNA 38846 Prediction 0.1828 lqf RAID00392863 dme-miR-33-5p miRNA MIMAT0000342 lqf mRNA 38846 Prediction 0.2202 lqf RAID00503195 dme-miR-4-3p miRNA MIMAT0000109 lqf mRNA 38846 Prediction 0.2381 lqf RAID00683789 dme-miR-994-5p miRNA MIMAT0005513 lqf mRNA 38846 Prediction 0.2202 lqf RAID00692962 dme-miR-1014-3p miRNA MIMAT0005027 lqf mRNA 38846 Prediction 0.1828 lqf RAID00798359 dme-miR-375-3p miRNA MIMAT0005472 lqf mRNA 38846 Prediction 0.1828 lqf RAID00874814 dme-miR-92b-3p miRNA MIMAT0000358 lqf mRNA 38846 Prediction 0.2381 lqf RAID00988290 dme-miR-8-3p miRNA MIMAT0000113 lqf mRNA 38846 Prediction 0.2455 lqf RAID01064396 dme-miR-79-3p miRNA MIMAT0000352 lqf mRNA 38846 Prediction 0.2381 lqf RAID01145250 dme-miR-11-3p miRNA MIMAT0000116 lqf mRNA 38846 Prediction 0.1828 lqf RAID01270590 dme-miR-190-5p miRNA MIMAT0005467 lqf mRNA 38846 Prediction 0.1828 lqf RAID01288026 dme-miR-283-5p miRNA MIMAT0000347 lqf mRNA 38846 Prediction 0.1828 lqf RAID01513410 dme-miR-963-5p miRNA MIMAT0005477 lqf mRNA 38846 Prediction 0.1828 lqf RAID01533875 dme-miR-1004-3p miRNA MIMAT0005017 lqf mRNA 38846 Prediction 0.2202 lqf RAID01619180 dme-miR-1017-3p miRNA MIMAT0005030 lqf mRNA 38846 Prediction 0.2381 lqf RAID01756349 dme-miR-315-5p miRNA MIMAT0000407 lqf mRNA 38846 Prediction 0.1828 lqf RAID01939225 dme-miR-1003-3p miRNA MIMAT0005016 lqf mRNA 38846 Prediction 0.2202 lqf RAID02041677 dme-miR-985-3p miRNA MIMAT0005502 lqf mRNA 38846 Prediction 0.1828 lqf RAID02273656 dme-miR-5-5p miRNA MIMAT0000110 lqf mRNA 38846 Prediction 0.1828 lqf RAID02592096 dme-miR-313-3p miRNA MIMAT0000405 lqf mRNA 38846 Prediction 0.2202 lqf RAID02757991 dme-miR-iab-8-5p miRNA MIMAT0005463 lqf mRNA 38846 Prediction 0.1828 lqf RAID03029349 dme-miR-312-3p miRNA MIMAT0000404 lqf mRNA 38846 Prediction 0.2202 lqf RAID03381045 dme-miR-954-5p miRNA MIMAT0005465 lqf mRNA 38846 Prediction 0.1828 lqf RAID03434187 dme-miR-311-3p miRNA MIMAT0000403 lqf mRNA 38846 Prediction 0.2202 lqf RAID03445408 dme-mir-iab-8 miRNA MI0005805 lqf mRNA 38846 Prediction 0.2202 lqf RAID03752491 dme-miR-973-5p miRNA MIMAT0005489 lqf mRNA 38846 Prediction 0.1828 lqf RAID03867178 dme-miR-92a-3p miRNA MIMAT0000334 lqf mRNA 38846 Prediction 0.2202 lqf RAID03870920 dme-miR-310-3p miRNA MIMAT0000402 lqf mRNA 38846 Prediction 0.2202