DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 44131 Mkrn1 auaguaaAGUAUACGUUGCAUUU-AUGu |::||| ||: |||| ||| uccguacUUGUAUUGAAU-UAAAUUACa 2 21 226 252 [dm3:3L:21524317-21524343:-] 0.5883 122 0 -7.54 -1.2437 MIMAT0000360 dme-miR-287 44131 Mkrn1 caCGUUUGCUAAAAGU-UGUGu |:|||| || |||| |||| acGUAAACAAUAUUCACACACg 2 20 79 100 [dm3:3L:21524469-21524490:-] 0.5953 139 0 -14.54 -1.2352 MIMAT0000364 dme-miR-289 44131 Mkrn1 ucagcGUCCGAGGUGAAUUUAUAAAu :|||:| ||: ||||||| aaauuUAGGUUACAU---AAUAUUUa 2 22 168 190 [dm3:3L:21524379-21524401:-] 0.5916 153 7 -12.67 -1.1880 MIMAT0005464 dme-miR-iab-4as-3p 44131 Mkrn1 auUUGCAUA-UGACUUACAUAGg | || || | | ||||||| auAUCGAAUGAAUCUAUGUAUCa 2 21 528 550 [dm3:3L:21524019-21524041:-] 0.4222 151 7 -12.07 -0.7397 MIMAT0005488 dme-miR-972 44131 Mkrn1 cggauuuauaaGCAUAACAUgu :| |||||| ggcuuucagacUGAAUUGUAaa 3 12 381 402 [dm3:3L:21524167-21524188:-] 0.5850 123 0 -8.58 -0.1140 MIMAT0005489 dme-miR-973 44131 Mkrn1 uuuUAGCUUCAAGUUGGUG-GUUGGu ||: || ||||| :|| ||||: aucAUUAAAUUUCAA-UACACAACUu 2 23 304 328 [dm3:3L:21524241-21524265:-] 0.5850 120 0 -10.19 -0.1387 MIMAT0005500 dme-miR-984 44131 Mkrn1 uuUAAGGUUGGCAUAAAUGGAGu || |: | || |||||| uuAUACUUUCGAAAUGUACCUCu 2 22 739 761 [dm3:3L:21523808-21523830:-] 0.4740 121 6 -13.05 -0.1729 MIMAT0005502 dme-miR-985 44131 Mkrn1 acgggcugguaaccuUGUAAAc |||||| guauugaauuaaauuACAUUUa 2 8 235 256 [dm3:3L:21524313-21524334:-] 0.5883 120 6 -6.19 -0.3711 MIMAT0005509 dme-miR-991 44131 Mkrn1 ugAAAGGUUUGAUGUUGAAAUu |||| | || ||||||||| aaUUUCAAUAC-ACAACUUUAa 2 21 311 331 [dm3:3L:21524238-21524258:-] 0.5850 170 7 -16.38 -1.0113 MIMAT0005028 dme-miR-1015 44131 Mkrn1 gacguUCU-CUCUACAGGGUCCu :|| | | |||||||| aauuuGGAUGUAAAGUCCCAGGa 2 18 54 76 [dm3:3L:21524493-21524515:-] 0.5953 148 7 -19.42 -1.0015 MIMAT0011784 dme-miR-2279* 44131 Mkrn1 uuaaaguGUGUGUCUAUAAAUu :|||:| ||||||| uuuagguUACAUA-AUAUUUAu 2 16 171 191 [dm3:3L:21524378-21524398:-] 0.5916 153 7 -8.13 -1.0137 MIMAT0011788 dme-miR-2281* 44131 Mkrn1 aacguagacgucgacgUCUAUUa |||||| ucagacugaauuguaaAGAUAAa 2 8 386 408 [dm3:3L:21524161-21524183:-] 0.5850 120 6 -10.70 -0.1658 MIMAT0012201 dme-miR-2493 44131 Mkrn1 ugcggagcgUGUU-UA--UGUGUGCc |||| || ||||||| aacacguaaACAAUAUUCACACACGa 2 15 76 101 [dm3:3L:21524468-21524493:-] 0.5953 148 7 -16.47 -1.2145 MIMAT0012202 dme-miR-2494* 44131 Mkrn1 aaggguuagaccacGUGAAUg |||||| uaauauuuauucucCACUUAa 2 8 182 202 [dm3:3L:21524367-21524387:-] 0.5916 120 6 -8.79 -0.1912 MIMAT0012209 dme-miR-2497 44131 Mkrn1 gaCGUUUGUAACAUUUACAAca |:| : || ||||||| auGUACCUCUUUAAAAUGUUuu 3 21 752 773 [dm3:3L:21523796-21523817:-] 0.4740 132 0 -4.96 -0.1091 MIMAT0012210 dme-miR-2498* 44131 Mkrn1 guuuuUAUUCGUAUUG-UCGGAAAu :| | ::| |: ||||||| uuuuuGUUAUUGUUAUGAGCCUUUg 2 20 590 614 [dm3:3L:21523955-21523979:-] 0.5043 146 7 -10.47 -0.6919 MIMAT0012215 dme-miR-2500 44131 Mkrn1 gacuccagguGUGUGUUUUAgg :| ||||||| aaugcgaaauUAAACAAAAUaa 3 13 132 153 [dm3:3L:21524416-21524437:-] 0.5935 128 0 -5.37 -0.1670 MIMAT0012215 dme-miR-2500 44131 Mkrn1 gacuccAGGUGU----GUGU-UUUAGg |||||| |||| ||||| caccaaUCCACAUGAGCACAUAAAUCu 2 17 482 508 [dm3:3L:21524061-21524087:-] 0.4924 123 0 -15.93 -0.2661 MIMAT0000113 dme-miR-8 44131 Mkrn1 cuGUAGAAAUGGACUGUCAUAau :| || || :| |||||| caUACCUAUAAUU--CAGUAUaa 3 22 634 654 [dm3:3L:21523915-21523935:-] 0.5323 130 0 -10.31 -0.1123 MIMAT0000120 dme-miR-14 44131 Mkrn1 auccucucucuuuuUCUGACu |||||| aaauuauggcuuucAGACUGa 2 8 374 394 [dm3:3L:21524175-21524195:-] 0.5850 120 6 -9.80 -0.2223 MIMAT0000319 dme-miR-263a 44131 Mkrn1 caCUUAAGAAGGUCACGGUAAUUg |:| ||| | :|||||| aaGGAACCUUGAUAUAUCAUUAAa 2 23 289 312 [dm3:3L:21524257-21524280:-] 0.5850 134 6 -7.81 -0.2542 MIMAT0000319 dme-miR-263a 44131 Mkrn1 cacuuaagaaggucacgGUAAUUg |||||| aaacaucagcccaaaagCAUUAAa 2 8 31 54 [dm3:3L:21524515-21524538:-] 0.5953 120 6 -8.41 -0.2075 MIMAT0000333 dme-miR-275 44131 Mkrn1 gcgcgcgAUGAAG----UCCAUGGAcu |||||: | |||||| aaguuuaUACUUUCGAAAUGUACCUcu 3 17 735 761 [dm3:3L:21523808-21523834:-] 0.4740 127 0 -11.30 -0.1425 MIMAT0000347 dme-miR-283 44131 Mkrn1 ucuuaauggucgacUAUAAAu |||||| auuuagguuacauaAUAUUUa 2 8 170 190 [dm3:3L:21524379-21524399:-] 0.5916 120 6 -6.67 -0.1408 MIMAT0000355 dme-miR-210 44131 Mkrn1 aucggcgaCAGUGUGCGUGUu || | ||||||| acaacuaaGUGAAACGCACAc 2 14 462 482 [dm3:3L:21524087-21524107:-] 0.4924 149 7 -12.26 -0.6780 MIMAT0000393 dme-miR-306 44131 Mkrn1 aacucucAGUGAUUCAUGGAcu ||: | |||||| uauacuuUCGAAAUGUACCUcu 3 16 740 761 [dm3:3L:21523808-21523829:-] 0.4740 127 0 -9.75 -0.1425 MIMAT0000396 dme-let-7 44131 Mkrn1 ugauauguuggaugAUGGAGu |||||| auacuuucgaaaugUACCUCu 2 8 741 761 [dm3:3L:21523808-21523828:-] 0.4740 120 6 -13.02 -0.1713 MIMAT0000408 dme-miR-316 44131 Mkrn1 gcggUCAUUCG-CCUUUUUCUgu || || | ||||||| cagaAGGAAACAAAAAAAAGAaa 3 19 11 33 [dm3:3L:21524536-21524558:-] 0.5953 129 0 -8.83 -0.1744 MIMAT0005466 dme-miR-955 44131 Mkrn1 cugugaguuuggagacGUGCUAc |||||| guaaacaauauucacaCACGAUa 2 8 81 103 [dm3:3L:21524466-21524488:-] 0.5953 120 6 -11.00 -0.1745 MIMAT0005470 dme-miR-957 44131 Mkrn1 cggaGUCA-AAACCUGCCAAAGu || | ||| ||||||: cauaCAUUCUUUAAUCGGUUUUc 2 19 413 435 [dm3:3L:21524134-21524156:-] 0.5387 133 0 -9.06 -0.1188 MIMAT0005476 dme-miR-962 44131 Mkrn1 cugucgUAGUUAAAGAGAUGGAAua ||:| ||: |||||| aauuaaAUUACAUUUAAUACCUUua 3 20 241 265 [dm3:3L:21524304-21524328:-] 0.5883 135 0 -9.30 -0.2209 MIMAT0005476 dme-miR-962 44131 Mkrn1 cugUCGUAGUUAAAGAG-AUGGA-AUa ||:||:| | |: | ||||| || uaaAGUAUUACUGUUGCAUACCUAUAa 2 23 618 644 [dm3:3L:21523925-21523951:-] 0.5323 129 0 -10.92 -0.9582 MIMAT0005477 dme-miR-963 44131 Mkrn1 cuUUGUUGGACUAUAA---AUGGAAca ||: | | | ||| |||||| ugAAUUAAAUUACAUUUAAUACCUUua 3 23 239 265 [dm3:3L:21524304-21524330:-] 0.5883 129 0 -5.35 -0.2270 MIMAT0005478 dme-miR-964 44131 Mkrn1 uuCAAU-UCGAGGGGAUAAGAuu |||| | : ::|||||| agGUUACAUAAUAUUUAUUCUcc 3 21 174 196 [dm3:3L:21524373-21524395:-] 0.5916 127 0 -8.95 -0.1455 MIMAT0005487 dme-miR-971 44131 Mkrn1 agUGA--CAUUCUUCAU-UGUGGUu ||| ||:| | | | |||||| caACUAAGUGAAACGCACACACCAa 2 21 463 487 [dm3:3L:21524082-21524106:-] 0.4924 123 6 -13.00 -0.5827 MIMAT0005497 dme-miR-981 44131 Mkrn1 acguccaaagcagcUGUUGCUu :|||||| auucuccacuuaauGCAACGAa 2 9 190 211 [dm3:3L:21524358-21524379:-] 0.5916 124 6 -9.98 -0.3498 MIMAT0005519 dme-miR-999 44131 Mkrn1 ucUGUGU-CAGAAUGUC-AAUUGu || || |:||: || ||||| cuACUCAUUUUUUGAAGUUUAACa 2 21 435 458 [dm3:3L:21524111-21524134:-] 0.4924 123 0 -9.36 -0.9702 MIMAT0005019 dme-miR-1006 44131 Mkrn1 gaUACUUAUUCUUUA-GCUUAAAu || || : || :|||||| acAUCUUUACUGUAUAUGAAUUUu 2 22 711 734 [dm3:3L:21523835-21523858:-] 0.4740 128 6 -5.28 -0.1002 MIMAT0005027 dme-miR-1014 44131 Mkrn1 gacguUUACUUUUACUUAAAa | || | |||||||| ucuuuACUGUAUAUGAAUUUu 2 17 714 734 [dm3:3L:21523835-21523855:-] 0.4740 156 7 -11.18 -1.1076 MIMAT0005027 dme-miR-1014 44131 Mkrn1 gaCGUUUACUUUUACUUAAaa |:| || | |||||| ccGUACUUG-UAUUGAAUUaa 3 20 227 246 [dm3:3L:21524323-21524342:-] 0.5883 125 0 -5.04 -0.2605

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Mkrn1 RAID00166626 dme-miR-985-3p miRNA MIMAT0005502 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID00237021 dme-miR-962-5p miRNA MIMAT0005476 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID00288954 dme-miR-969-5p miRNA MIMAT0005485 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID00407817 dme-miR-955-5p miRNA MIMAT0005466 Mkrn1 mRNA 44131 Prediction 0.2202 Mkrn1 RAID00567480 dme-miR-316-5p miRNA MIMAT0000408 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID00650784 dme-miR-964-5p miRNA MIMAT0005478 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID00925555 dme-miR-263a-5p miRNA MIMAT0000319 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID01095600 dme-miR-14-3p miRNA MIMAT0000120 Mkrn1 mRNA 44131 Prediction 0.2455 Mkrn1 RAID01153781 dme-miR-306-5p miRNA MIMAT0000393 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID01156003 dme-miR-991-3p miRNA MIMAT0005509 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID01181811 dme-miR-275-3p miRNA MIMAT0000333 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID01216906 dme-miR-210-3p miRNA MIMAT0000355 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID01248968 dme-let-7-5p miRNA MIMAT0000396 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID01339053 dme-miR-957-3p miRNA MIMAT0005470 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID01404874 dme-miR-1015-3p miRNA MIMAT0005028 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID01523156 dme-miR-283-5p miRNA MIMAT0000347 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID01805612 dme-miR-33-5p miRNA MIMAT0000342 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID02475253 dme-miR-963-5p miRNA MIMAT0005477 Mkrn1 mRNA 44131 Prediction 0.2202 Mkrn1 RAID03249001 dme-miR-1014-3p miRNA MIMAT0005027 Mkrn1 mRNA 44131 Prediction 0.2202 Mkrn1 RAID03368083 dme-miR-1006-3p miRNA MIMAT0005019 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID03477395 dme-miR-999-3p miRNA MIMAT0005519 Mkrn1 mRNA 44131 Prediction 0.1828 Mkrn1 RAID03572567 dme-miR-8-3p miRNA MIMAT0000113 Mkrn1 mRNA 44131 Prediction 0.2202 Mkrn1 RAID03696202 dme-miR-971-3p miRNA MIMAT0005487 Mkrn1 mRNA 44131 Prediction 0.2202 Mkrn1 RAID03961422 dme-miR-981-3p miRNA MIMAT0005497 Mkrn1 mRNA 44131 Prediction 0.2381