DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005488 dme-miR-972 31458 CG4165 cgGAUUUAUAAGCAUAACAUGu || || ||| ||||||| caCUCAAAAUU--AAUUGUACa 2 21 140 159 [dm3:X:5320520-5320539:+] 0.5363 153 7 -10.57 -1.2681 MIMAT0005488 dme-miR-972 31458 CG4165 cggauuuaUAAGCAUAACAUGu |||: ||||||| uguccucgAUUU-AAUUGUACu 2 15 282 302 [dm3:X:5320662-5320682:+] 0.5319 144 7 -10.51 -1.1766 MIMAT0005021 dme-miR-1008 31458 CG4165 acAUUUGUGUUUUUCGACAcu || :: : | |||||| auUAUGUUUUAUUAGCUGUaa 3 20 341 361 [dm3:X:5320721-5320741:+] 0.5319 123 0 -8.75 -0.1501 MIMAT0011791 dme-miR-2283 31458 CG4165 uaacAGCAUAAGUACUAUAAAAg |: |||| | |||||| cuauUUUUAUUAUUAUUAUUUUu 2 20 166 188 [dm3:X:5320546-5320568:+] 0.5363 127 6 -2.82 -0.3268 MIMAT0011791 dme-miR-2283 31458 CG4165 uaacagcAUAAGUACUAUAAAAg || |::| |||||| cucgauuUAAUUGUACUAUUUUu 2 17 286 308 [dm3:X:5320666-5320688:+] 0.5319 124 6 -6.45 -0.1299 MIMAT0011791 dme-miR-2283 31458 CG4165 uaacAGCAUAAGUA--CUAUAAAAg |:||| | | | |||||| uuaaUUGUACACUUUCGCUAUUUUu 2 20 149 173 [dm3:X:5320529-5320553:+] 0.5363 122 6 -8.62 -0.1552 MIMAT0012201 dme-miR-2493 31458 CG4165 ugcggaGCGUGU--UUA--UGUGUGCc :||| | |:| ||||||| aaaugaUGCAAAGGAGUAGACACACGc 2 18 216 242 [dm3:X:5320596-5320622:+] 0.5319 143 7 -17.03 -0.4395 MIMAT0012206 dme-miR-2496* 31458 CG4165 augcuaccggagagUGUGUGCGUg ||||||||| augcaaaggaguagACACACGCAc 2 11 221 244 [dm3:X:5320601-5320624:+] 0.5319 150 7 -21.37 -0.3180 MIMAT0012215 dme-miR-2500 31458 CG4165 gacuccAGGUGUGUGUUUUAGg ||| ||| ||||||: gguuucUCC-CACUCAAAAUUa 2 17 131 151 [dm3:X:5320511-5320531:+] 0.5363 142 0 -12.71 -0.1114 MIMAT0000109 dme-miR-4 31458 CG4165 aguuaccaacAGAUCGAAAUa || ||||||| --ggauuagcUCGAGCUUUAa 2 12 1 19 [dm3:X:5320381-5320399:+] 0.4631 147 7 -7.61 -0.6073 MIMAT0000109 dme-miR-4 31458 CG4165 aguuaccaacaGAUCGAAAUa | ||||||| uuuuuuuggaaCAAGCUUUAg 2 11 189 209 [dm3:X:5320569-5320589:+] 0.5341 142 7 -7.85 -0.9608 MIMAT0000338 dme-miR-277 31458 CG4165 acaGCAUGGUCUAUCACGUAAAu | |:||| | ||||||| acaCAUGCCA---AAUGCAUUUg 2 21 112 131 [dm3:X:5320492-5320511:+] 0.5363 148 7 -12.46 -0.4718 MIMAT0000350 dme-miR-34 31458 CG4165 gugUUGGUCGAUUGGUGUG-ACGGu |: ||| || :||||| |||| agaAGGCAGAUACUCACACAUGCCa 2 22 97 121 [dm3:X:5320477-5320501:+] 0.5363 137 0 -23.63 -0.7738 MIMAT0000408 dme-miR-316 31458 CG4165 gcGGUCAUUCGCCUUUUUCUGu :|| ||| | |||||||| agUCAUUAA-C--AAAAAGACa 2 21 311 329 [dm3:X:5320691-5320709:+] 0.5319 151 7 -13.24 -1.2179 MIMAT0000408 dme-miR-316 31458 CG4165 gcggucauucgcCUUUUUCUGu |:||||||| aauggaucgaaaGGAAAAGACa 2 11 433 454 [dm3:X:5320813-5320834:+] 0.3957 146 7 -15.55 -0.2944 MIMAT0005467 dme-miR-190 31458 CG4165 guUGGUUCUU-AU-AGUUUGUAU-AGa || :| |: || |:||||||| || ugACAGAAAGUUACUUAAACAUACUCg 2 23 390 416 [dm3:X:5320770-5320796:+] 0.4871 128 0 -13.81 -0.8181 MIMAT0005472 dme-miR-375 31458 CG4165 auugaauucgguuugCUUGUUu |||||| uauuuuuuuuuuuugGAACAAg 2 8 182 203 [dm3:X:5320562-5320583:+] 0.5363 120 6 -7.15 -0.2251 MIMAT0005485 dme-miR-969 31458 CG4165 uuuuGAACGAAUCACCUUGag :|| :|| |||||| uauuUUUUUUUUUUGGAACaa 3 18 182 202 [dm3:X:5320562-5320582:+] 0.5363 133 0 -8.02 -0.1999 MIMAT0005512 dme-miR-993 31458 CG4165 ucuauggacaucucuGCUCGAAg ||||||| ------ggauuagcuCGAGCUUu 2 9 1 17 [dm3:X:5320381-5320397:+] 0.4631 140 7 -13.16 -0.6332 MIMAT0005030 dme-miR-1017 31458 CG4165 ccuacUCAAACCCAUCUCGAAAg :| || | | ||||||| -----GGAUUAGCUCGAGCUUUa 2 19 1 18 [dm3:X:5320381-5320398:+] 0.4631 154 7 -10.61 -0.7588

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp16-45 RAID00931241 dme-miR-993-3p miRNA MIMAT0005512 Usp16-45 mRNA 31458 Prediction 0.2202 Usp16-45 RAID01676358 dme-miR-277-3p miRNA MIMAT0000338 Usp16-45 mRNA 31458 Prediction 0.2202 Usp16-45 RAID02085083 dme-miR-979-3p miRNA MIMAT0005495 Usp16-45 mRNA 31458 Prediction 0.1828 Usp16-45 RAID02419566 dme-miR-375-3p miRNA MIMAT0005472 Usp16-45 mRNA 31458 Prediction 0.1828 Usp16-45 RAID02427750 dme-miR-34-5p miRNA MIMAT0000350 Usp16-45 mRNA 31458 Prediction 0.1828 Usp16-45 RAID02582680 dme-miR-190-5p miRNA MIMAT0005467 Usp16-45 mRNA 31458 Prediction 0.1828 Usp16-45 RAID02775800 dme-miR-4-3p miRNA MIMAT0000109 Usp16-45 mRNA 31458 Prediction 0.2202 Usp16-45 RAID02874772 dme-miR-79-3p miRNA MIMAT0000352 Usp16-45 mRNA 31458 Prediction 0.1828 Usp16-45 RAID03116442 dme-miR-960-5p miRNA MIMAT0005474 Usp16-45 mRNA 31458 Prediction 0.1828 Usp16-45 RAID03152684 dme-miR-1002-5p miRNA MIMAT0005483 Usp16-45 mRNA 31458 Prediction 0.1828 Usp16-45 RAID03179740 dme-miR-1017-3p miRNA MIMAT0005030 Usp16-45 mRNA 31458 Prediction 0.2202 Usp16-45 RAID03181081 dme-miR-969-5p miRNA MIMAT0005485 Usp16-45 mRNA 31458 Prediction 0.1828 Usp16-45 RAID03234323 dme-miR-252-5p miRNA MIMAT0005516 Usp16-45 mRNA 31458 Prediction 0.1828 Usp16-45 RAID03386171 dme-miR-263b-5p miRNA MIMAT0000362 Usp16-45 mRNA 31458 Prediction 0.1828 Usp16-45 RAID03513731 dme-miR-316-5p miRNA MIMAT0000408 Usp16-45 mRNA 31458 Prediction 0.2202 Usp16-45 RAID03875427 dme-miR-972-3p miRNA MIMAT0005488 Usp16-45 mRNA 31458 Prediction 0.1828