DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 31523 CG12236 auaguaaAGUAUACG-UUGCAUUUAUGu |::|:| | ||: ||||||| uuaccccUUGUGUACAAAUUUAAAUACg 2 21 885 912 [dm3:X:5805559-5805586:+] 0.5265 159 7 -9.89 -0.9555 MIMAT0000343 dme-miR-280 31523 CG12236 auAGUAAAGUAUACGUUGCAUUUAUGu |::|| || | | || ||||||| aaUUGUUGCA-AAGAUACUUAAAUACa 2 26 167 192 [dm3:X:5806963-5806988:+] 0.5041 163 7 -9.57 -1.2419 MIMAT0000343 dme-miR-280 31523 CG12236 auaGUAAAGU-AUACGUUGCAUUUAUGu || || |:| : ::|||||||| uaaCAAAGCAUUGUUUCGUGUAAAUACu 2 25 240 267 [dm3:X:5807036-5807063:+] 0.5041 155 7 -13.70 -0.4732 MIMAT0000388 dme-miR-303 31523 CG12236 uggucaaaggacacuUUGGAUUu ||||||| agagcuaggcaacuuAACCUAAa 2 9 737 759 [dm3:X:5805411-5805433:+] 0.5361 140 7 -14.85 -0.9768 MIMAT0005464 dme-miR-iab-4as-3p 31523 CG12236 auUUG-CAUAUG--ACUUACAUAGg |:| ||||:| | |||||||| acAGCGGUAUGCCAUUAAUGUAUCa 2 21 2 26 [dm3:X:5806798-5806822:+] 0.5814 162 7 -16.31 -0.7592 MIMAT0005473 dme-miR-959 31523 CG12236 aaGUAU-UAUGGGGGCUACUGUu || | | |||| ||||||| caCAAACACACCCAAGAUGACAa 2 21 511 533 [dm3:X:5805185-5805207:+] 0.5271 159 7 -21.15 -0.9815 MIMAT0005502 dme-miR-985 31523 CG12236 acgggcugguaaccuUGUAAAc |||||| caaagauacuuaaauACAUUUa 2 8 175 196 [dm3:X:5806971-5806992:+] 0.5041 120 6 -4.37 -0.2518 MIMAT0005510 dme-miR-992 31523 CG12236 gaAUCAUGGUCUUUGCACAUGa || |||| :|||||| uaUAUUACC--CCUUGUGUACa 2 21 881 900 [dm3:X:5805555-5805574:+] 0.5265 129 6 -12.43 -0.1265 MIMAT0005510 dme-miR-992 31523 CG12236 gaaUCAUGGUCUUUGCACAUga || |:: | |||||| caaAGCAUU-GUUUCGUGUAaa 3 20 243 263 [dm3:X:5807039-5807059:+] 0.5041 121 0 -9.85 -0.1871 MIMAT0005521 dme-miR-1001 31523 CG12236 acuaggaacccucaAAUGGGu |||||| agaaaauauauauaUUACCCc 2 8 871 891 [dm3:X:5805545-5805565:+] 0.5322 120 6 -7.48 -0.1274 MIMAT0005018 dme-miR-1005 31523 CG12236 gacgcuuaauuucUAAGGUcu |||||| uacuagauacuccAUUCCAaa 3 9 264 284 [dm3:X:5807060-5807080:+] 0.5197 120 0 -6.07 -0.1103 MIMAT0005021 dme-miR-1008 31523 CG12236 acauuugugUUUUUCGACACu |::|||||||| uccgcaggaAGGAAGCUGUGu 2 13 817 837 [dm3:X:5805491-5805511:+] 0.5308 152 7 -17.13 -0.4761 MIMAT0005022 dme-miR-1009 31523 CG12236 gacuuUACAUUGUUAAAAACUcu || | ::| ||||||| accucAUAU-GUAUUUUUUGAaa 3 19 688 709 [dm3:X:5805362-5805383:+] 0.5361 132 0 -7.89 -0.1048 MIMAT0011789 dme-miR-2281 31523 CG12236 cguuaugACGUCUAUG-UCUAu ||:| |||| |||| uguuucgUGUAAAUACUAGAUa 2 15 251 272 [dm3:X:5807047-5807068:+] 0.5197 122 0 -10.90 -1.1127 MIMAT0012208 dme-miR-2497* 31523 CG12236 uuGUUGAUGUAAAACGUUACGAAUg ::| :|| |||| :||||||| uuUGAGAGCACUUUG-GAUGCUUAa 2 24 547 570 [dm3:X:5805221-5805244:+] 0.5361 161 7 -13.21 -0.3664 MIMAT0012217 dme-miR-2501* 31523 CG12236 uuuCUUUCAAACUAACGUUCUCa || | | || |||||||| aguGAUACUAUG--UGCAAGAGa 2 21 583 603 [dm3:X:5805257-5805277:+] 0.5361 153 7 -12.75 -1.0744 MIMAT0000105 dme-miR-1 31523 CG12236 gaggUAUGAAGAA--AUGUAAGGu ||||| | | |||||| guaaAUACUAGAUACUCCAUUCCa 2 19 259 282 [dm3:X:5807055-5807078:+] 0.5197 121 6 -14.81 -0.2378 MIMAT0000319 dme-miR-263a 31523 CG12236 cacuuaagaaggucACGGUAAUUg ||||||||| ----gacagcgguaUGCCAUUAAu 2 11 1 20 [dm3:X:5806797-5806816:+] 0.6541 150 7 -14.58 -0.8147 MIMAT0000346 dme-miR-282 31523 CG12236 ugucUGUUUCG-GAU------CAUCUCCGAUCUAa ||||||| :|: ||| | |||||| aauaACAAAGCAUUGUUUCGUGUAAAUACUAGAUa 2 25 238 272 [dm3:X:5807034-5807068:+] 0.5197 126 6 -15.53 -0.1279 MIMAT0000361 dme-miR-87 31523 CG12236 gugUGGAC-UUUAAAACGAGUu | ||| : | |||||||| ggaAGCUGUGUACUUUGCUCAc 2 19 827 848 [dm3:X:5805501-5805522:+] 0.5308 153 7 -12.65 -0.2693 MIMAT0000390 dme-miR-304 31523 CG12236 gaguguaaauguuuaACUCUAAu ||||||| aaaguccccccuccaUGAGAUUc 2 9 779 801 [dm3:X:5805453-5805475:+] 0.5146 140 7 -8.45 -0.2472 MIMAT0000391 dme-miR-305 31523 CG12236 gucucguggacuacuuCAUGUUa |||||| auauauuaccccuuguGUACAAa 2 8 880 902 [dm3:X:5805554-5805576:+] 0.5265 120 6 -10.71 -0.1188 MIMAT0000406 dme-miR-314 31523 CG12236 ggcuUGAAUAACCGAGCUUAu ||| || ||||||| aaccACUCAU---CUCGAAUa 2 18 224 241 [dm3:X:5807020-5807037:+] 0.5041 145 7 -12.91 -1.1889 MIMAT0000409 dme-miR-317 31523 CG12236 ugaccuauggUGGUCGACACAAGu |||| |||||||| cgcgcuuuugACCAUCUGUGUUCa 2 15 932 955 [dm3:X:5805606-5805629:+] 0.5322 162 7 -20.66 -0.3615 MIMAT0000413 dme-miR-iab-4-3p 31523 CG12236 caaUGCAUAUGACUUCCAUAUGGc || || |:||| ||||||| guaACUUA-AUUGA--GUAUACCa 2 22 1054 1074 [dm3:X:5805728-5805748:+] 0.5586 156 7 -11.88 -0.7868 MIMAT0005469 dme-miR-956 31523 CG12236 uuaccuaaucUCACCAGAGCUUu | | ||||||| gaaacaaaccACUCAUCUCGAAu 2 14 218 240 [dm3:X:5807014-5807036:+] 0.5041 141 7 -9.25 -1.0142 MIMAT0005474 dme-miR-960 31523 CG12236 cgaUACG-UUA-GACCUUAUGAGu :||: ||| || :|||||| uucGUGUAAAUACU-AGAUACUCc 2 20 254 276 [dm3:X:5807050-5807072:+] 0.5197 131 6 -10.33 -0.1562 MIMAT0005483 dme-miR-1002 31523 CG12236 agcgggaaacauaggugAUGAAUu |||||| agcaauuguugcaaagaUACUUAa 2 8 164 187 [dm3:X:5806960-5806983:+] 0.5041 120 6 -11.31 -0.1452 MIMAT0005487 dme-miR-971 31523 CG12236 agugacauucuucaUUGUGGUu :|||||| uuaguuuaguuuaaGACACCAc 2 9 1000 1021 [dm3:X:5805674-5805695:+] 0.5550 124 6 -9.08 -0.1749 MIMAT0005487 dme-miR-971 31523 CG12236 agugACAUUCUUCAUUGUGGUu | |:: || |||||||| ggcaUUUGGAAACUAACACCAu 2 19 112 133 [dm3:X:5806908-5806929:+] 0.5088 158 7 -15.61 -0.7423 MIMAT0005492 dme-miR-976 31523 CG12236 cguAACUACUAUU-GAUUAGGUu || | | :| :||||||| aauUUAAAUACGAUUUAAUCCAa 2 20 901 923 [dm3:X:5805575-5805597:+] 0.5265 146 7 -10.63 -1.0808 MIMAT0005516 dme-miR-252 31523 CG12236 gagGACGCCGUGAUCAUGAAUc :||: ||| : |||||| caaUUGUUGCAAAGAUACUUAa 2 20 166 187 [dm3:X:5806962-5806983:+] 0.5041 127 6 -11.53 -0.1466

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG12236 RAID00176106 dme-miR-1002-5p miRNA MIMAT0005483 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID00194831 dme-miR-963-5p miRNA MIMAT0005477 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID00569366 dme-miR-304-5p miRNA MIMAT0000390 CG12236 mRNA 31523 Prediction 0.2202 CG12236 RAID00917034 dme-miR-956-3p miRNA MIMAT0005469 CG12236 mRNA 31523 Prediction 0.2202 CG12236 RAID00991445 dme-miR-305-5p miRNA MIMAT0000391 CG12236 mRNA 31523 Prediction 0.2202 CG12236 RAID01020033 dme-miR-33-5p miRNA MIMAT0000342 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID01168610 dme-miR-976-3p miRNA MIMAT0005492 CG12236 mRNA 31523 Prediction 0.2202 CG12236 RAID01477134 dme-miR-1008-3p miRNA MIMAT0005021 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID01498279 dme-miR-282-5p miRNA MIMAT0000346 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID01576600 dme-miR-263a-5p miRNA MIMAT0000319 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID01597035 dme-miR-992-3p miRNA MIMAT0005510 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID01919562 dme-miR-1009-3p miRNA MIMAT0005022 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID01960421 dme-miR-973-5p miRNA MIMAT0005489 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID01967015 dme-miR-283-5p miRNA MIMAT0000347 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID02104350 dme-miR-971-3p miRNA MIMAT0005487 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID02350725 dme-miR-314-3p miRNA MIMAT0000406 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID02363354 dme-miR-iab-4-3p miRNA MIMAT0000413 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID02821919 dme-miR-252-5p miRNA MIMAT0005516 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID02943087 dme-miR-960-5p miRNA MIMAT0005474 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID03194778 dme-miR-959-3p miRNA MIMAT0005473 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID03379149 dme-miR-961-5p miRNA MIMAT0005475 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID03435040 dme-mir-iab-4 miRNA MI0000432 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID03474933 dme-miR-278-3p miRNA MIMAT0000339 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID03669468 dme-miR-317-3p miRNA MIMAT0000409 CG12236 mRNA 31523 Prediction 0.2202 CG12236 RAID03879184 dme-miR-1-3p miRNA MIMAT0000105 CG12236 mRNA 31523 Prediction 0.1828 CG12236 RAID03978494 dme-miR-87-3p miRNA MIMAT0000361 CG12236 mRNA 31523 Prediction 0.2202