DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 31571 CG3815 auAGUAAAGUAUACGUUGCAUUUAUGu |:|| | :||||| ||||||| ccUUAUGACCAGUGCAA--UAAAUACg 2 26 262 286 [dm3:X:6192787-6192811:+] 0.5055 162 7 -13.63 -0.4283 MIMAT0005509 dme-miR-991 31571 CG3815 ugaaaGGUUUGAUGU-UGAAAUu ||: |: :|| |||||| uaaacCCGCAUCGCAUACUUUAc 2 18 399 421 [dm3:X:6192924-6192946:+] 0.4967 121 6 -8.47 -0.7822 MIMAT0005026 dme-miR-1013 31571 CG3815 gcucaAGCCGU-AUGAAAAUa |||||| |||||||| aagccUCGGCAGUACUUUUAa 2 16 195 215 [dm3:X:6192720-6192740:+] 0.4925 166 7 -17.92 -0.8223 MIMAT0005026 dme-miR-1013 31571 CG3815 gcucaagccguAUGAAAAUa |||||||| aucgcauacuuUACUUUUAu 2 10 408 427 [dm3:X:6192933-6192952:+] 0.4967 145 7 -10.87 -1.1155 MIMAT0011789 dme-miR-2281 31571 CG3815 cguuAUGACGUCUAUGUCUAu ||:||:| | |||||| cuuuUAUUGUAAAAACAGAUg 2 18 421 441 [dm3:X:6192946-6192966:+] 0.4967 137 6 -13.38 -0.1474 MIMAT0012210 dme-miR-2498* 31571 CG3815 guUUUUAUUCGUAUUGUCGGAAAu |: | |||| |:|||||||| ucAGCAGAAGC--AGCAGCCUUUa 2 23 20 41 [dm3:X:6192545-6192566:+] 0.4413 163 7 -21.55 -0.4437 MIMAT0012216 dme-miR-2501 31571 CG3815 aauCGGGUCCGUGAGGUUUGAAUg ||: | |: :||||||: auuGCUAAAACGAAAUAAACUUGu 2 22 447 470 [dm3:X:6192972-6192995:+] 0.4967 129 0 -11.06 -0.1174 MIMAT0000334 dme-miR-92a 31571 CG3815 uauccggccCUGUUCACGUUAc ||| |||||||| uugccuuauGACCAGUGCAAUa 2 14 259 280 [dm3:X:6192784-6192805:+] 0.5055 157 7 -16.39 -0.9047 MIMAT0000358 dme-miR-92b 31571 CG3815 cguccggccCUGAUCACGUUAa ||| |||||||| uugccuuauGACCAGUGCAAUa 2 14 259 280 [dm3:X:6192784-6192805:+] 0.5055 157 7 -16.63 -0.9047 MIMAT0000391 dme-miR-305 31571 CG3815 guCUCGUGGACUA--CUUCAUGUUa | ||| : || |:||||||| caGUGCAAUAAAUACGGAGUACAAa 2 22 271 295 [dm3:X:6192796-6192820:+] 0.5055 152 7 -16.35 -0.4559 MIMAT0000402 dme-miR-310 31571 CG3815 uuuccggccCUUCACACGUUAu || ||||||| uugccuuauGACCAGUGCAAUa 2 14 259 280 [dm3:X:6192784-6192805:+] 0.5055 141 7 -12.57 -0.9047 MIMAT0000403 dme-miR-311 31571 CG3815 aguCCGGCCACU-UACACGUUAu | |: ||| ||||||| uuuGCCUUAUGACCAGUGCAAUa 2 20 258 280 [dm3:X:6192783-6192805:+] 0.5055 142 7 -14.72 -0.9014 MIMAT0000404 dme-miR-312 31571 CG3815 agucCGGCAGA--GUUCACGUUAu ||| | | | |||||||| auuuGCCUUAUGACCAGUGCAAUa 2 19 257 280 [dm3:X:6192782-6192805:+] 0.5055 153 7 -14.14 -0.8947 MIMAT0000405 dme-miR-313 31571 CG3815 agcccGACACUUUUCACGUUAu :| ||| |||||||| uugccUUAUGACCAGUGCAAUa 2 18 259 280 [dm3:X:6192784-6192805:+] 0.5055 157 7 -14.30 -0.8913 MIMAT0005496 dme-miR-980 31571 CG3815 auucgGGAAGUGUUCCGUCGAu :|| ::::||||||| accaaUCUCAGUGGGGCAGCUa 2 18 105 126 [dm3:X:6192630-6192651:+] 0.5391 149 7 -21.48 -0.1474 MIMAT0005501 dme-miR-927 31571 CG3815 ccauUUCGCAUCCUUAA-GAUUu |: :||| |||| |||| aaacAGAUGUAUAAAUUGCUAAa 2 19 433 455 [dm3:X:6192958-6192980:+] 0.4967 122 0 -8.07 -1.1674 MIMAT0005504 dme-miR-987 31571 CG3815 guaguUAG-GUCUGAUAAAUGAAAu ||| || || |||||||| cccgcAUCGCAUAC--UUUACUUUu 2 20 403 425 [dm3:X:6192928-6192950:+] 0.4967 155 7 -13.14 -0.9629 MIMAT0005513 dme-miR-994 31571 CG3815 uaGUGCCGAUG-AUAAA-GGAAUc :| || ||: ||||| ||||| auUAAGGGUAUAUAUUUGCCUUAu 2 21 244 267 [dm3:X:6192769-6192792:+] 0.4990 131 0 -12.41 -0.5949

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG3815 RAID00256975 dme-miR-310-3p miRNA MIMAT0000402 CG3815 mRNA 31571 Prediction 0.2202 CG3815 RAID00345006 dme-miR-954-5p miRNA MIMAT0005465 CG3815 mRNA 31571 Prediction 0.1828 CG3815 RAID00564319 dme-miR-311-3p miRNA MIMAT0000403 CG3815 mRNA 31571 Prediction 0.2202 CG3815 RAID00804212 dme-miR-312-3p miRNA MIMAT0000404 CG3815 mRNA 31571 Prediction 0.2202 CG3815 RAID00977890 dme-miR-970-3p miRNA MIMAT0005486 CG3815 mRNA 31571 Prediction 0.1828 CG3815 RAID01057312 dme-miR-305-5p miRNA MIMAT0000391 CG3815 mRNA 31571 Prediction 0.2202 CG3815 RAID01094005 dme-miR-313-3p miRNA MIMAT0000405 CG3815 mRNA 31571 Prediction 0.2202 CG3815 RAID01417710 dme-miR-980-3p miRNA MIMAT0005496 CG3815 mRNA 31571 Prediction 0.2202 CG3815 RAID01602914 dme-miR-987-5p miRNA MIMAT0005504 CG3815 mRNA 31571 Prediction 0.2202 CG3815 RAID02150368 dme-miR-994-5p miRNA MIMAT0005513 CG3815 mRNA 31571 Prediction 0.1828 CG3815 RAID02443063 dme-miR-958-3p miRNA MIMAT0005471 CG3815 mRNA 31571 Prediction 0.1828 CG3815 RAID03435208 dme-miR-92b-3p miRNA MIMAT0000358 CG3815 mRNA 31571 Prediction 0.2202 CG3815 RAID03530455 dme-miR-1013-3p miRNA MIMAT0005026 CG3815 mRNA 31571 Prediction 0.1828 CG3815 RAID03712415 dme-miR-33-5p miRNA MIMAT0000342 CG3815 mRNA 31571 Prediction 0.1828 CG3815 RAID03735583 dme-miR-92a-3p miRNA MIMAT0000334 CG3815 mRNA 31571 Prediction 0.2202 CG3815 RAID03775446 dme-miR-124-3p miRNA MIMAT0000351 CG3815 mRNA 31571 Prediction 0.1828 CG3815 RAID03894744 dme-miR-927-5p miRNA MIMAT0005501 CG3815 mRNA 31571 Prediction 0.1828