DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000363 dme-miR-288 31620 pod1 guacuuuACUUUAGCUGUACUUu || :: |||||||| caacgucUGCGGCGGACAUGAAc 2 17 10 32 [dm3:X:6705615-6705637:+] 0.6124 148 7 -11.90 -0.7773 MIMAT0000363 dme-miR-288 31620 pod1 guacuuuacUUUAGCUGUACUuu | || |||||| uacauuuacACAUAUACAUGAua 3 15 1286 1308 [dm3:X:6706891-6706913:+] 0.4590 126 0 -5.40 -0.1021 MIMAT0000364 dme-miR-289 31620 pod1 ucAGCGUCCGAG-GUGAAUUUAUAAAu || | ||| ||| |||||||| auUCAAAAACUCAAACUCAAAUAUUUc 2 25 1422 1448 [dm3:X:6707027-6707053:+] 0.4590 163 7 -10.52 -0.4634 MIMAT0000364 dme-miR-289 31620 pod1 ucagcGUCCGAGGUGAA--UUUAUAAAu || :|:: :|| ||||||| acuauCACCUUUUUUUUCGCAAUAUUUc 2 22 676 703 [dm3:X:6706281-6706308:+] 0.5192 144 7 -7.18 -0.1664 MIMAT0000364 dme-miR-289 31620 pod1 ucAGCGU-CCGAGGUGAAUUUAUAAAu ||| | | |||: || |||||| uuUCGAACGUCUCUUAUU-UAUAUUUa 2 25 1868 1893 [dm3:X:6707473-6707498:+] 0.5826 129 6 -11.86 -0.2003 MIMAT0005481 dme-miR-966 31620 pod1 ggugugucgggUGUUGGGUGu | ||||||| auccgaaaugaAAAACCCACc 2 11 739 759 [dm3:X:6706344-6706364:+] 0.5192 142 7 -15.15 -0.4577 MIMAT0005521 dme-miR-1001 31620 pod1 acuagGAACCCUCAAAUGGGu ||| || ||||||| uuuaaCUUUUGA-UUUACCCa 2 17 400 419 [dm3:X:6706005-6706024:+] 0.5762 150 7 -15.39 -1.0708 MIMAT0005018 dme-miR-1005 31620 pod1 gaCGCUUAAUUUC--UAAGGUCu || || |:||| ||||||| agGCAAACUGAAGCAAUUCCAGc 2 20 1556 1578 [dm3:X:6707161-6707183:+] 0.3990 162 7 -14.03 -0.2213 MIMAT0005025 dme-miR-1012 31620 pod1 gaUAC-CCCUUUUAGAAACUGAUu :|| | | : :| ||||||| gaGUGUGUGUGUGUGCUUGACUAu 2 22 657 680 [dm3:X:6706262-6706285:+] 0.5227 144 7 -9.79 -0.1361 MIMAT0005026 dme-miR-1013 31620 pod1 gcuCAAGCCGUA-UGAAAAUa || :| : | ||||||: uguGUGUGUUUUAACUUUUGa 2 18 391 411 [dm3:X:6705996-6706016:+] 0.5762 128 0 -6.55 -0.1275 MIMAT0011784 dme-miR-2279* 31620 pod1 uuaaAGUGUGUGUCUAUAAAUu || | :|: ||||||| aacgUCUCUUAUUUAUAUUUAu 2 19 1873 1894 [dm3:X:6707478-6707499:+] 0.5826 150 7 -5.60 -1.1470 MIMAT0011786 dme-miR-2280 31620 pod1 uauaaaauaacgguUCGAUUCu ||||||| uauagagaacucguAGCUAAGc 2 9 169 190 [dm3:X:6705774-6705795:+] 0.4948 140 7 -9.90 -0.1435 MIMAT0011789 dme-miR-2281 31620 pod1 cgUUAUGACGU-CUAUGUCUAu || ::| :| |||||||| acAAGGUUCUAUUAUACAGAUu 2 20 1503 1524 [dm3:X:6707108-6707129:+] 0.4692 150 7 -11.51 -0.7705 MIMAT0011791 dme-miR-2283 31620 pod1 uaACAGCAUAAGUAC--UAUAAAAg | |:| || :||| ||||||| uaUAUUG-AUAUAUGAUAUAUUUUg 2 22 1307 1330 [dm3:X:6706912-6706935:+] 0.4590 154 7 -9.11 -0.3473 MIMAT0011791 dme-miR-2283 31620 pod1 uaaCAGCAUAAGUACUAUAAAag ||| | || | |||||| aacGUC-UCUUAUUUAUAUUUau 3 21 1873 1894 [dm3:X:6707478-6707499:+] 0.5826 134 0 -4.94 -0.1025 MIMAT0011791 dme-miR-2283 31620 pod1 uaACAGCAUAAGUACUAUAAAAg |||| | || | |||||| uaUGUCCUUUU--UUUUAUUUUg 2 22 364 384 [dm3:X:6705969-6705989:+] 0.5762 126 6 -4.44 -0.1595 MIMAT0012196 dme-miR-2489 31620 pod1 ugACGUUUAUGUUG-UA-UGUUAu | :| |||:| | || ||||| uaUUUAUAUAUAUCUAUAACAAUa 2 21 1888 1911 [dm3:X:6707493-6707516:+] 0.5733 123 0 -7.27 -1.0048 MIMAT0012198 dme-miR-2491 31620 pod1 ucguugacGUUU-CCGUUGUCGc |||| |||||||| aaaucaaaCAAACUGCAACAGCc 2 15 975 997 [dm3:X:6706580-6706602:+] 0.4993 153 7 -15.54 -0.2181 MIMAT0012198 dme-miR-2491 31620 pod1 ucGUUGACGU--UUCCGUUGUCGc |:|| || | | ||||||| caCGACAUCAUGACGACAACAGCa 2 21 106 129 [dm3:X:6705711-6705734:+] 0.4974 151 7 -13.81 -0.4685 MIMAT0012199 dme-miR-2492 31620 pod1 aaACUUUCGAGAGCUGUUUUGUa | ||| |:| ||||||| acUCAAAUAUUU---CAAAACAg 2 22 1436 1455 [dm3:X:6707041-6707060:+] 0.4590 145 7 -8.16 -0.6463 MIMAT0012211 dme-miR-2498 31620 pod1 uucAUUCUGCCCUUACGGUCAAa ||| : | | ||||||| aauUAAUCUUCGUAAGCCAGUUu 2 21 309 331 [dm3:X:6705914-6705936:+] 0.5762 148 7 -12.28 -0.9745 MIMAT0012215 dme-miR-2500 31620 pod1 gacuccAGGU-GU--GUGUUUUAGg |||| || : ||||||| agcaauUCCAGCAAUUCCAAAAUCa 2 17 1567 1591 [dm3:X:6707172-6707196:+] 0.4269 146 7 -12.22 -0.5411 MIMAT0000338 dme-miR-277 31620 pod1 acAGCAUGGUCUAUCACGUAAAu || | : | | ||||||| aaUCAAAGUCCAAACUGCAUUUa 2 22 1587 1609 [dm3:X:6707192-6707214:+] 0.4828 145 7 -11.12 -0.6491 MIMAT0000338 dme-miR-277 31620 pod1 acAGCAUGGUCUAU-CACG-UAAAu ||||::: |: |||| |||| guUCGUGUUUUUUGUGUGCUAUUUa 2 22 429 453 [dm3:X:6706034-6706058:+] 0.5762 120 0 -14.44 -0.9488 MIMAT0000341 dme-miR-279 31620 pod1 aauuacucacACCUAGAUCAGu || ||||||| cccccaccauUGUUUCUAGUCu 2 13 787 808 [dm3:X:6706392-6706413:+] 0.5192 144 7 -10.04 -0.4312 MIMAT0000347 dme-miR-283 31620 pod1 ucuuaauggucgacUAUAAAu |||||| aacgucucuuauuuAUAUUUa 2 8 1873 1893 [dm3:X:6707478-6707498:+] 0.5826 120 6 -4.54 -0.2171 MIMAT0000352 dme-miR-79 31620 pod1 uacGAAACCAUUAGAUC-GAAAu | ||| | ||||| |||| cacCAUUGUU--UCUAGUCUUUc 2 20 791 811 [dm3:X:6706396-6706416:+] 0.5192 120 0 -7.72 -0.1157 MIMAT0000356 dme-miR-285 31620 pod1 cgUGACUAAAGCUUAC-CACGAu |: || | :| :|| ||||| agAUAGAGUGUGUGUGUGUGCUu 2 21 652 674 [dm3:X:6706257-6706279:+] 0.5227 120 0 -12.99 -0.2553 MIMAT0000359 dme-miR-286 31620 pod1 ucGUGCUCACAAGCCAGAUCAGu ||| | |||| ||||||| ccCACCAUUGUU---UCUAGUCu 2 22 789 808 [dm3:X:6706394-6706413:+] 0.5192 157 7 -13.57 -0.4037 MIMAT0000361 dme-miR-87 31620 pod1 guGUGGACUUUAAAACGAGUu :| ||| |: ||||||| aaUAACUGCAG--UUGCUCAa 2 20 281 299 [dm3:X:6705886-6705904:+] 0.5342 148 7 -14.12 -0.4822 MIMAT0000407 dme-miR-315 31620 pod1 cgaaagacucGUUGUUAGUUUu ||| ||||||| ccagcaauucCAA-AAUCAAAg 2 13 1574 1594 [dm3:X:6707179-6707199:+] 0.4007 146 7 -10.36 -0.2595 MIMAT0000407 dme-miR-315 31620 pod1 cgaaagacuCGUUGUUAGUUUu ||: ||||||| cugaaaaauGCGUAAAUCAAAc 2 14 962 983 [dm3:X:6706567-6706588:+] 0.4993 145 7 -9.29 -0.4535 MIMAT0000408 dme-miR-316 31620 pod1 gcgguCAU-UCGCCUUUUUCUGu ||| | || ||||||| aaaauGUAUAACG--AAAAGACu 2 18 1035 1055 [dm3:X:6706640-6706660:+] 0.4993 145 7 -10.68 -0.2126 MIMAT0000412 dme-miR-iab-4-5p 31620 pod1 aguccUA-UGUAA--GUCAUAUGCa || ||| | || |||||| uaucuAUAACAAUACCAAUAUACGa 2 18 1898 1922 [dm3:X:6707503-6707527:+] 0.5733 123 6 -8.75 -0.1755 MIMAT0000413 dme-miR-iab-4-3p 31620 pod1 caAUGC-AUAUGACUUCCAUAUGGc ||:| ||||:| ||||||| uaUAUGAUAUAUU--UUGUAUACCa 2 23 1315 1337 [dm3:X:6706920-6706942:+] 0.4590 154 7 -14.57 -1.0128 MIMAT0005472 dme-miR-375 31620 pod1 auUGAAUUCGGUUUGCU-UGUUu ||| | :|||:||| |||| gaACUACAAUCAAGCGAGACAAu 2 21 932 954 [dm3:X:6706537-6706559:+] 0.4993 132 0 -15.62 -0.5317 MIMAT0005476 dme-miR-962 31620 pod1 cuGUCG--UAGUUAAAGAGAUG-GAAUa :||| ||: | | |:||| |||| uuUAGCCUAUUUAGGUGUUUACACUUAc 2 24 474 501 [dm3:X:6706079-6706106:+] 0.5445 122 0 -9.54 -0.5449 MIMAT0005476 dme-miR-962 31620 pod1 cugucguaguuAAAGAGAUGGA-AUa | |:||||||| || auauuucacccUCUUUCUACCUAUAc 2 15 697 722 [dm3:X:6706302-6706327:+] 0.5192 122 0 -11.20 -0.5191 MIMAT0005493 dme-miR-977 31620 pod1 aaucuguugcacuUAUAGAgu |||||| uuuauauuuauauAUAUCUau 3 9 1884 1904 [dm3:X:6707489-6707509:+] 0.5826 120 0 -4.21 -0.1070 MIMAT0005514 dme-miR-995 31620 pod1 uucggCUUA-GUACAC-CACGAu ||:| ::|||| ||||| agauaGAGUGUGUGUGUGUGCUu 2 17 652 674 [dm3:X:6706257-6706279:+] 0.5227 123 0 -16.32 -0.2575 MIMAT0005515 dme-miR-996 31620 pod1 ucuGCUCGUACUUUAGAUCAGu | | ||| : ||||||| cccCCACCAUUGUUUCUAGUCu 2 20 787 808 [dm3:X:6706392-6706413:+] 0.5192 151 7 -11.06 -0.4312 MIMAT0005520 dme-miR-1000 31620 pod1 ugacgacACUGUCCUGUU-AUa ||||| ||||| || gaacgacUGACA-GACAAGUAu 2 15 1628 1648 [dm3:X:6707233-6707253:+] 0.4828 120 0 -12.61 -0.1520 MIMAT0005024 dme-miR-1011 31620 pod1 gacgcucgcuaaacuUGGUUAUu ||||||| uauaucuauaacaauACCAAUAu 2 9 1896 1918 [dm3:X:6707501-6707523:+] 0.5733 140 7 -6.84 -1.0878

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score pod1 RAID00223542 dme-miR-311-3p miRNA MIMAT0000403 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID00482974 dme-miR-316-5p miRNA MIMAT0000408 pod1 mRNA 31620 Prediction 0.2381 pod1 RAID00578503 dme-miR-277-3p miRNA MIMAT0000338 pod1 mRNA 31620 Prediction 0.2381 pod1 RAID00608775 dme-miR-92a-3p miRNA MIMAT0000334 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID00636730 dme-miR-970-3p miRNA MIMAT0005486 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01030540 dme-miR-263b-5p miRNA MIMAT0000362 pod1 mRNA 31620 Prediction 0.2202 pod1 RAID01064550 dme-miR-276b-3p miRNA MIMAT0000354 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01081772 dme-miR-310-3p miRNA MIMAT0000402 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01127876 dme-miR-977-3p miRNA MIMAT0005493 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01149550 dme-miR-87-3p miRNA MIMAT0000361 pod1 mRNA 31620 Prediction 0.2455 pod1 RAID01175029 dme-miR-1005-3p miRNA MIMAT0005018 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01198534 dme-miR-285-3p miRNA MIMAT0000356 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01318403 dme-miR-315-5p miRNA MIMAT0000407 pod1 mRNA 31620 Prediction 0.2381 pod1 RAID01545038 dme-miR-1001-5p miRNA MIMAT0005521 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01568577 dme-miR-92b-3p miRNA MIMAT0000358 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01638767 dme-miR-284-3p miRNA MIMAT0000348 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01651922 dme-miR-985-3p miRNA MIMAT0005502 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01865056 dme-miR-1012-3p miRNA MIMAT0005025 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01877394 dme-miR-967-5p miRNA MIMAT0005482 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID01938312 dme-miR-996-3p miRNA MIMAT0005515 pod1 mRNA 31620 Prediction 0.2202 pod1 RAID01945014 dme-miR-976-3p miRNA MIMAT0005492 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID02204687 dme-miR-932-5p miRNA MIMAT0005479 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID02244363 dme-miR-276a-3p miRNA MIMAT0000337 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID02303201 dme-miR-962-5p miRNA MIMAT0005476 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID02364257 dme-miR-137-3p miRNA MIMAT0005507 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID02402562 dme-miR-1000-5p miRNA MIMAT0005520 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID02554419 dme-miR-973-5p miRNA MIMAT0005489 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID02607437 dme-miR-313-3p miRNA MIMAT0000405 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID02680759 dme-miR-279-3p miRNA MIMAT0000341 pod1 mRNA 31620 Prediction 0.2202 pod1 RAID02703080 dme-miR-966-5p miRNA MIMAT0005481 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID02716247 dme-miR-1011-3p miRNA MIMAT0005024 pod1 mRNA 31620 Prediction 0.2202 pod1 RAID02748249 dme-miR-iab-4-5p miRNA MIMAT0000412 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID02756585 dme-miR-995-3p miRNA MIMAT0005514 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID02884728 dme-miR-283-5p miRNA MIMAT0000347 pod1 mRNA 31620 Prediction 0.2202 pod1 RAID03229351 dme-miR-975-5p miRNA MIMAT0005491 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID03289800 dme-miR-286-3p miRNA MIMAT0000359 pod1 mRNA 31620 Prediction 0.2202 pod1 RAID03293653 dme-miR-219-5p miRNA MIMAT0000335 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID03314738 dme-mir-iab-4 miRNA MI0000432 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID03375780 dme-miR-1015-3p miRNA MIMAT0005028 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID03426607 dme-mir-281-1 miRNA MI0000366 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID03463775 dme-miR-312-3p miRNA MIMAT0000404 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID03808789 dme-miR-iab-4-3p miRNA MIMAT0000413 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID03895719 dme-miR-79-3p miRNA MIMAT0000352 pod1 mRNA 31620 Prediction 0.1828 pod1 RAID03916485 dme-miR-375-3p miRNA MIMAT0005472 pod1 mRNA 31620 Prediction 0.1828