DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 31628 CG14435 uggucauggacuacaUUAUGAgu |||||| aaaauaacaauaacaAAUACUau 3 9 709 731 [dm3:X:6733520-6733542:-] 0.5803 120 0 -6.94 -0.2046 MIMAT0000343 dme-miR-280 31628 CG14435 auaguaaaguauacguugcaUUUAUGu |||||| cacaagaaaauaacaauaacAAAUACu 2 8 703 729 [dm3:X:6733522-6733548:-] 0.5803 120 6 -5.62 -0.3292 MIMAT0000364 dme-miR-289 31628 CG14435 ucagcgUCCGAGGUGAAUUUAUAAAu | |:| |:|| |||||| aaugugAUGUUAAAUUU-UAUAUUUu 2 21 560 584 [dm3:X:6733667-6733691:-] 0.5803 122 6 -7.76 -0.1036 MIMAT0005464 dme-miR-iab-4as-3p 31628 CG14435 auUUGCAUAUGACUUACAUAGg ||:||||| || ||||||: guAAUGUAUA-UGUAUGUAUUu 2 21 614 634 [dm3:X:6733617-6733637:-] 0.5803 158 0 -15.94 -0.1747 MIMAT0005481 dme-miR-966 31628 CG14435 ggUGUGUCGGGU-GUUGGGUGu ||: | :| | |||||||| uaACGAAAUCAACCAACCCACa 2 20 415 436 [dm3:X:6733815-6733836:-] 0.5594 154 7 -20.53 -1.0107 MIMAT0005488 dme-miR-972 31628 CG14435 cggaUUUAUAAGCA-UAACAUgu | :|| |:|| |||||| aaugAUGUAAUUGUAAUUGUAau 3 19 596 618 [dm3:X:6733633-6733655:-] 0.5803 137 0 -8.13 -0.1273 MIMAT0005488 dme-miR-972 31628 CG14435 cgGAUUUAUAA-GCAUAACAUGu :||||| || : | |||||| ugUUAAAUUUUAUAUUUUGUACu 2 21 567 589 [dm3:X:6733662-6733684:-] 0.5803 135 6 -8.89 -0.1960 MIMAT0005489 dme-miR-973 31628 CG14435 uuUUAGCUUCAAGUUGG-UGGUUGGu || ||||| ||||| ||||||| uaAAGCGAAG--CAACCAACCAACCa 2 24 519 542 [dm3:X:6733709-6733732:-] 0.5803 175 7 -29.40 -1.1094 MIMAT0005489 dme-miR-973 31628 CG14435 uuuUAGCUUCA-AG--UUGG-UGGUUGGu || |||| | ||:| ||||||| auuAUAUAAGUAACGAAAUCAACCAACCc 2 23 405 433 [dm3:X:6733818-6733846:-] 0.5594 151 7 -17.65 -0.9394 MIMAT0011784 dme-miR-2279* 31628 CG14435 uuaAAGUGUGUGUCUAUAAAUu | :|:|:::| :|||||| uaaUGUAUAUGUAUGUAUUUAu 2 20 615 636 [dm3:X:6733615-6733636:-] 0.5803 143 6 -8.26 -0.2444 MIMAT0011784 dme-miR-2279* 31628 CG14435 uuAAAGUGUGUGUCUAUAAAuu | |:| |: : |||||| gaUGUUAAAU-UUUAUAUUUug 3 21 565 585 [dm3:X:6733666-6733686:-] 0.5803 122 0 -5.04 -0.1240 MIMAT0011791 dme-miR-2283 31628 CG14435 uaACAGCAUAAGUACUAUAAAAg |||: ||| | ||||||| gaUGUUAAAUU--UUAUAUUUUg 2 22 565 585 [dm3:X:6733666-6733686:-] 0.5803 154 7 -4.93 -1.0960 MIMAT0011791 dme-miR-2283 31628 CG14435 uaACA-GCAUAAGUACUAUAAAAg ||| :|||||:| |||||| uaUGUAUGUAUUUA--UUAUUUUa 2 22 622 643 [dm3:X:6733608-6733629:-] 0.5803 133 6 -11.56 -0.2206 MIMAT0012201 dme-miR-2493 31628 CG14435 ugcggaGCGUGUUUAUGUGUGcc | || ||| |||||| guugaaCCCAAAAACACACACaa 3 18 306 328 [dm3:X:6733923-6733945:-] 0.5384 141 0 -11.62 -0.1382 MIMAT0012203 dme-miR-2494 31628 CG14435 gaacAUUCACCUGUAAUG-ACCCUu | :| |||:: ||| ||||| aagaUUGGAGGAUGGUACAUGGGAg 2 21 194 218 [dm3:X:6734033-6734057:-] 0.5155 128 0 -18.43 -0.3663 MIMAT0012215 dme-miR-2500 31628 CG14435 gacuccaggUGUGUGU-UUUAGg ||||||| ||||| aacccaaaaACACACACAAAUCa 2 14 310 332 [dm3:X:6733919-6733941:-] 0.5384 129 0 -16.72 -1.0976 MIMAT0000106 dme-miR-2a 31628 CG14435 cgaguaguuucgaccgACACUAu |||||| aaagaaugucaaccaaUGUGAUg 2 8 546 568 [dm3:X:6733683-6733705:-] 0.5803 120 6 -10.54 -0.1202 MIMAT0000107 dme-miR-2b 31628 CG14435 cgaggaguuucgaccgACACUAu |||||| aaagaaugucaaccaaUGUGAUg 2 8 546 568 [dm3:X:6733683-6733705:-] 0.5803 120 6 -9.80 -0.1202 MIMAT0000111 dme-miR-6 31628 CG14435 uuUUUCUU---GUCGGUGACACUAu |||||| || ||| |||||| caAAAGAAUGUCAACCAAUGUGAUg 2 21 544 568 [dm3:X:6733683-6733707:-] 0.5803 143 6 -19.86 -0.1190 MIMAT0000114 dme-miR-9a 31628 CG14435 aguaUGUCGAUCUAUUGGUUUcu | ||| | : ||||||| acgaAAAGCAAAGCAACCAAAaa 3 20 769 791 [dm3:X:6733460-6733482:-] 0.5261 139 0 -10.24 -0.1264 MIMAT0000116 dme-miR-11 31628 CG14435 cgUUCUUG-AGU--CUGACACUAc |||||: ||| | |||||| aaAAGAAUGUCAACCAAUGUGAUg 2 20 545 568 [dm3:X:6733683-6733706:-] 0.5803 129 6 -17.22 -0.1190 MIMAT0000118 dme-miR-13a 31628 CG14435 ugaguaguuuuaccgACACUAu |||||| aagaaugucaaccaaUGUGAUg 2 8 547 568 [dm3:X:6733683-6733704:-] 0.5803 120 6 -10.80 -0.1179 MIMAT0000119 dme-miR-13b 31628 CG14435 ugagcaguuuuaccgACACUAu |||||| aagaaugucaaccaaUGUGAUg 2 8 547 568 [dm3:X:6733683-6733704:-] 0.5803 120 6 -14.95 -0.1179 MIMAT0000338 dme-miR-277 31628 CG14435 acAGCAUGGUCUAU-C--ACGUAAAu |:||| :: ||| | ||:|||| aaUUGUAAUGUAUAUGUAUGUAUUUa 2 22 610 635 [dm3:X:6733616-6733641:-] 0.5803 139 0 -11.13 -0.1481 MIMAT0000347 dme-miR-283 31628 CG14435 ucuuaauggucgacUAUAAAu |||||| ugauguuaaauuuuAUAUUUu 2 8 564 584 [dm3:X:6733667-6733687:-] 0.5803 120 6 -3.10 -0.1109 MIMAT0000392 dme-miR-9c 31628 CG14435 agaUGUCGAUCUUAUGGUUUcu | ||| | : |||||| cgaAAAGCAAAGCAACCAAAaa 3 20 770 791 [dm3:X:6733460-6733481:-] 0.5261 131 0 -6.95 -0.1264 MIMAT0000395 dme-miR-9b 31628 CG14435 guaUGUCGAUUUUAGUGGUUUcu | ||| |||: |||||| cgaAAAGC-AAAGCAACCAAAaa 3 21 770 791 [dm3:X:6733460-6733481:-] 0.5261 138 0 -11.22 -0.1264 MIMAT0000399 dme-miR-308 31628 CG14435 gagugucauauuaggACACUAa |||||| aagaaugucaaccaaUGUGAUg 2 8 547 568 [dm3:X:6733683-6733704:-] 0.5803 120 6 -10.32 -0.1202 MIMAT0000411 dme-miR-2c 31628 CG14435 cggguaguuucgaccgACACUAu |||||| aaagaaugucaaccaaUGUGAUg 2 8 546 568 [dm3:X:6733683-6733705:-] 0.5803 120 6 -10.62 -0.1202 MIMAT0005474 dme-miR-960 31628 CG14435 cgauacGUUAGACCUUAUGAgu |||| |||||| aaauaaCAAUAACAAAUACUau 3 17 710 731 [dm3:X:6733520-6733541:-] 0.5803 128 0 -8.03 -0.1972 MIMAT0005485 dme-miR-969 31628 CG14435 uuUUGAACGAAUCACCUUGAg :| | |:||| ||||||| agGAAUCGUUUA-UGGAACUg 2 20 54 73 [dm3:X:6734235-6734254:-] 0.5313 157 7 -12.57 -0.2390 MIMAT0005487 dme-miR-971 31628 CG14435 agugaCAUUCUUC-AUUGUG-GUu |||||||| ||||| || caagcGUAAGAAGAGAACACACAc 2 18 668 691 [dm3:X:6733560-6733583:-] 0.5803 132 0 -17.77 -0.8720 MIMAT0005505 dme-miR-988 31628 CG14435 cgCACUCCAAACGUUGUUCCCc || | | | :|||||| | acGUAAUGCUAAUAACAAGUGa 2 21 383 404 [dm3:X:6733847-6733868:-] 0.5384 124 0 -9.93 -0.1120 MIMAT0005507 dme-miR-137 31628 CG14435 gaugcacauaagagUUCGUUau |||||| caaacgaaaacgaaAAGCAAag 3 9 760 781 [dm3:X:6733470-6733491:-] 0.5803 120 0 -7.67 -0.1018 MIMAT0005511 dme-miR-929 31628 CG14435 guuagaCUGAGGCAAUCCCUc ||: |||||||| uguggaGAUGGAGUUAGGGAg 2 16 32 52 [dm3:X:6734256-6734276:-] 0.5313 147 7 -20.12 -0.1831 MIMAT0005016 dme-miR-1003 31628 CG14435 gacaCUUAUACAU--UUACACUcu ||||:| | ||||||| aaaaGAAUGUCAACCAAUGUGAug 3 19 545 568 [dm3:X:6733683-6733706:-] 0.5803 137 0 -11.97 -0.1014 MIMAT0005027 dme-miR-1014 31628 CG14435 gaCGUUUACUUUUACUUAAAa |:| ||| ||| |||| auGUAUAUG--UAUGUAUUUa 2 20 617 635 [dm3:X:6733616-6733634:-] 0.5803 120 0 -7.24 -0.1425

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG14435 RAID00000257 dme-miR-11-3p miRNA MIMAT0000116 CG14435 mRNA 31628 Prediction 0.2202 CG14435 RAID00268841 dme-miR-283-5p miRNA MIMAT0000347 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID00274567 dme-miR-929-3p miRNA MIMAT0005511 CG14435 mRNA 31628 Prediction 0.2202 CG14435 RAID00281895 dme-miR-973-5p miRNA MIMAT0005489 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID00350740 dme-miR-13b-3p miRNA MIMAT0000119 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID00384149 dme-miR-978-3p miRNA MIMAT0005494 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID00435028 dme-miR-971-3p miRNA MIMAT0005487 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID00462071 dme-bantam-3p miRNA MIMAT0000365 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID00737726 dme-miR-1003-3p miRNA MIMAT0005016 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID00809433 dme-miR-966-5p miRNA MIMAT0005481 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID00880824 dme-miR-9a-5p miRNA MIMAT0000114 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID00897461 dme-miR-988-3p miRNA MIMAT0005505 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID01265311 dme-miR-960-5p miRNA MIMAT0005474 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID01304779 dme-miR-6-3p miRNA MIMAT0000111 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID01353079 dme-miR-277-3p miRNA MIMAT0000338 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID01563071 dme-miR-1000-5p miRNA MIMAT0005520 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID01621720 dme-miR-190-5p miRNA MIMAT0005467 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID01678904 dme-miR-980-3p miRNA MIMAT0005496 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID01926147 dme-miR-308-3p miRNA MIMAT0000399 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID02044722 dme-miR-975-5p miRNA MIMAT0005491 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID02126847 dme-miR-309-3p miRNA MIMAT0000401 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID02179383 dme-miR-969-5p miRNA MIMAT0005485 CG14435 mRNA 31628 Prediction 0.2202 CG14435 RAID02286599 dme-miR-2a-3p miRNA MIMAT0000106 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID02727432 dme-miR-2b-3p miRNA MIMAT0000107 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID02774082 dme-miR-9b-5p miRNA MIMAT0000395 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID02833498 dme-miR-1014-3p miRNA MIMAT0005027 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID02969688 dme-miR-2c-3p miRNA MIMAT0000411 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID03029503 dme-miR-9c-5p miRNA MIMAT0000392 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID03155522 dme-miR-3-3p miRNA MIMAT0000108 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID03310206 dme-miR-318-3p miRNA MIMAT0000410 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID03335079 dme-miR-137-3p miRNA MIMAT0005507 CG14435 mRNA 31628 Prediction 0.2202 CG14435 RAID03407685 dme-miR-33-5p miRNA MIMAT0000342 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID03599648 dme-miR-985-3p miRNA MIMAT0005502 CG14435 mRNA 31628 Prediction 0.1828 CG14435 RAID03885474 dme-miR-282-5p miRNA MIMAT0000346 CG14435 mRNA 31628 Prediction 0.2202 CG14435 RAID03995979 dme-miR-13a-3p miRNA MIMAT0000118 CG14435 mRNA 31628 Prediction 0.1828