DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005502 dme-miR-985 44111 slpr acgggcuggUAACCUUGUAAAc | | |||||||| uuuguaggaACUCGAACAUUUu 2 14 648 669 [dm3:X:8064946-8064967:-] 0.5279 149 7 -9.05 -0.2023 MIMAT0005502 dme-miR-985 44111 slpr acgggcugguaaccuUGUAAAc |||||| caguuuuauuuacauACAUUUa 2 8 835 856 [dm3:X:8064759-8064780:-] 0.5155 120 6 -4.37 -0.1972 MIMAT0005022 dme-miR-1009 44111 slpr gaCUUUAC-AUUG-UUAAAAACUCu |||:|| :|| || ||||||| caGAAGUGAGGACGAACUUUUGAGg 2 22 408 432 [dm3:X:8065183-8065207:-] 0.5135 163 7 -19.14 -0.2199 MIMAT0005022 dme-miR-1009 44111 slpr gacUUUACAUUGUUA-AAAACUCu :| | | :::| ||||||| uucGACUUUUUUGGUAUUUUGAGc 2 21 810 833 [dm3:X:8064782-8064805:-] 0.5377 143 7 -7.11 -0.9163 MIMAT0005025 dme-miR-1012 44111 slpr gaUACCCCUUUUAGA-AAC-UGAUu || || ||||| | ||| |||| caAU-GGCAAAAUAUAUUGAACUAa 2 22 508 531 [dm3:X:8065084-8065107:-] 0.5279 130 0 -11.48 -1.0846 MIMAT0011784 dme-miR-2279* 44111 slpr uuaAAGUGUGUGUC--UAUAAAUu || |||: || ||||||| ggaUUAACAUUAAGCUAUAUUUAu 2 20 558 581 [dm3:X:8065034-8065057:-] 0.5279 154 7 -6.05 -0.7580 MIMAT0011784 dme-miR-2279* 44111 slpr uuAAAGUGUGUGUCUA-UAAAUu |||:|: :|: || ||||| caUUUUAUUUAUUUAUGAUUUAu 2 21 875 897 [dm3:X:8064718-8064740:-] 0.4934 124 0 -5.21 -1.1935 MIMAT0011789 dme-miR-2281 44111 slpr cguuaugacgUCUAUGUCUAu |||||||||| uagggcccagAGAUACAGAUa 2 12 174 194 [dm3:X:8065421-8065441:-] 0.4981 155 7 -15.64 -0.8734 MIMAT0011791 dme-miR-2283 44111 slpr uaacagcAUAAGUACUAUAAAAg |:| : |||||||| caaucuuUGUAAGAGAUAUUUUc 2 17 703 725 [dm3:X:8064890-8064912:-] 0.5279 148 7 -10.68 -0.3498 MIMAT0012199 dme-miR-2492 44111 slpr aaACUUUCGAGAGCUGUUUUGUa ||| |:|| |||||| | uaUGAUUUAUUUCUACAAAAAAa 2 22 888 910 [dm3:X:8064705-8064727:-] 0.4934 129 0 -9.63 -0.3452 MIMAT0012209 dme-miR-2497 44111 slpr gacGUUUG-UAACAUU-UACAACa | ||| | || || |||||| uucCUAACGAAUGCAAUAUGUUGu 2 20 284 307 [dm3:X:8065308-8065331:-] 0.5255 126 6 -10.17 -0.3771 MIMAT0000108 dme-miR-3 44111 slpr acucuGUGUGAAACGGGUCACu | :| || |:|||||| uaaucCCUAAUUAGUCCAGUGa 2 18 328 349 [dm3:X:8065266-8065287:-] 0.4967 141 6 -16.21 -0.1042 MIMAT0000319 dme-miR-263a 44111 slpr caCUUAAGAAGGUCACG-GUAAUUg ||| || |:|||| |||||| acGAAAAGUUGCGGUGCACAUUAAu 2 23 773 797 [dm3:X:8064818-8064842:-] 0.5328 138 6 -17.71 -0.7217 MIMAT0000332 dme-miR-274 44111 slpr uaaUGGGCAAU-CACAGCCAGUGUUUu |: :|||: | | ||||||| gcaAUAUGUUGUGCGAAAUUCACAAAu 2 24 296 322 [dm3:X:8065293-8065319:-] 0.5255 146 7 -14.89 -0.7504 MIMAT0000347 dme-miR-283 44111 slpr ucuuAAUGGUCGACUAUAAAu ||:: || ||||||| aucuUUGUAAG-AGAUAUUUu 2 18 705 724 [dm3:X:8064891-8064910:-] 0.5279 147 7 -6.08 -0.7031 MIMAT0000347 dme-miR-283 44111 slpr ucUUAAUGGUCGACUAUAAau |||| : | :||||||| uuAAUUUUAAUUUGAUAUUcg 3 20 793 813 [dm3:X:8064802-8064822:-] 0.5377 143 0 -6.27 -0.1027 MIMAT0000395 dme-miR-9b 44111 slpr guAUGUC-GAUUUUAG--UG-GUUUCu |::|| || ||:|| || ||||| acUGUAGACU-AAGUCAGACGCAAAGg 2 22 90 115 [dm3:X:8065500-8065525:-] 0.5550 121 0 -14.94 -0.6713 MIMAT0000401 dme-miR-309 44111 slpr auccuGUUUGAAAUGGGUCACg | || || ::|||||| aauccCUAA-UUAGUCCAGUGa 2 18 329 349 [dm3:X:8065266-8065286:-] 0.4967 135 6 -12.38 -0.1021 MIMAT0000410 dme-miR-318 44111 slpr acUCUAUUUG---UU--UCGGGUCACu || ||| | || ||:|||||| caAGUUAAUCCCUAAUUAGUCCAGUGa 2 21 323 349 [dm3:X:8065266-8065292:-] 0.4967 138 6 -17.38 -0.1021 MIMAT0005485 dme-miR-969 44111 slpr uuuuGAACGAAUCA-CCUUGAg || |:|| || |||||| aguuCUAGUUUUGUAGGAACUc 2 18 639 660 [dm3:X:8064955-8064976:-] 0.5279 129 6 -16.71 -0.6139 MIMAT0005503 dme-miR-986 44111 slpr agUCAGUGUU--GCGAUAAGCUcu | |: :|| :| ||||||| uuAAUUUUAAUUUGAUAUUCGAcu 3 21 793 816 [dm3:X:8064799-8064822:-] 0.5377 131 0 -8.06 -0.1251 MIMAT0005016 dme-miR-1003 44111 slpr gacaCUUAUACAUUUACAC-UCu ||| || |||||| || gcuaGAAAAUUGCAAUGUGUAGc 2 19 384 406 [dm3:X:8065209-8065231:-] 0.5135 122 0 -8.10 -0.4578

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score slpr RAID00161340 dme-miR-276b-3p miRNA MIMAT0000354 slpr mRNA 44111 Prediction 0.1828 slpr RAID00204863 dme-miR-310-3p miRNA MIMAT0000402 slpr mRNA 44111 Prediction 0.1828 slpr RAID00240288 dme-miR-9b-5p miRNA MIMAT0000395 slpr mRNA 44111 Prediction 0.1828 slpr RAID00306428 dme-miR-986-5p miRNA MIMAT0005503 slpr mRNA 44111 Prediction 0.1828 slpr RAID00697065 dme-miR-92b-3p miRNA MIMAT0000358 slpr mRNA 44111 Prediction 0.1828 slpr RAID00740765 dme-miR-985-3p miRNA MIMAT0005502 slpr mRNA 44111 Prediction 0.1828 slpr RAID00789783 dme-miR-969-5p miRNA MIMAT0005485 slpr mRNA 44111 Prediction 0.1828 slpr RAID00796908 dme-miR-309-3p miRNA MIMAT0000401 slpr mRNA 44111 Prediction 0.2202 slpr RAID00920269 dme-miR-263a-5p miRNA MIMAT0000319 slpr mRNA 44111 Prediction 0.1828 slpr RAID01336591 dme-miR-276a-3p miRNA MIMAT0000337 slpr mRNA 44111 Prediction 0.1828 slpr RAID01739443 dme-miR-313-3p miRNA MIMAT0000405 slpr mRNA 44111 Prediction 0.1828 slpr RAID01945671 dme-miR-34-5p miRNA MIMAT0000350 slpr mRNA 44111 Prediction 0.1828 slpr RAID01964409 dme-miR-1003-3p miRNA MIMAT0005016 slpr mRNA 44111 Prediction 0.1828 slpr RAID01978213 dme-miR-283-5p miRNA MIMAT0000347 slpr mRNA 44111 Prediction 0.2202 slpr RAID02260719 dme-miR-961-5p miRNA MIMAT0005475 slpr mRNA 44111 Prediction 0.1828 slpr RAID02292615 dme-miR-274-5p miRNA MIMAT0000332 slpr mRNA 44111 Prediction 0.2202 slpr RAID02385667 dme-miR-33-5p miRNA MIMAT0000342 slpr mRNA 44111 Prediction 0.1828 slpr RAID02604387 dme-miR-312-3p miRNA MIMAT0000404 slpr mRNA 44111 Prediction 0.1828 slpr RAID02786757 dme-miR-3-3p miRNA MIMAT0000108 slpr mRNA 44111 Prediction 0.2202 slpr RAID03283307 dme-miR-1009-3p miRNA MIMAT0005022 slpr mRNA 44111 Prediction 0.1828 slpr RAID03422214 dme-miR-311-3p miRNA MIMAT0000403 slpr mRNA 44111 Prediction 0.1828 slpr RAID03802096 dme-miR-92a-3p miRNA MIMAT0000334 slpr mRNA 44111 Prediction 0.1828 slpr RAID03897084 dme-miR-318-3p miRNA MIMAT0000410 slpr mRNA 44111 Prediction 0.2202