DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 31902 Gga gccccgcucucuuACUAUUCc ||||||| uguguauguacgcUGAUAAGa 2 9 151 171 [dm3:X:9498197-9498217:+] 0.4676 140 7 -7.55 -0.8463 MIMAT0005464 dme-miR-iab-4as-3p 31902 Gga auuugcAUAUGACUUACAUAGg |||| | ||||||| ucguaaUAUAAU-UAUGUAUCa 2 17 210 230 [dm3:X:9498256-9498276:+] 0.5464 150 7 -12.92 -1.3259 MIMAT0000338 dme-miR-277 31902 Gga acAGCAU-GGUCUAUCACGUAAAu |: || :|| || ||||||| auUUUUAUUCAAAU--UGCAUUUu 2 22 171 192 [dm3:X:9498217-9498238:+] 0.5511 149 7 -6.36 -1.0917 MIMAT0000407 dme-miR-315 31902 Gga cgaaagacucguuguUAGUUUu |||||| guaauauaauuauguAUCAAAg 2 8 212 233 [dm3:X:9498258-9498279:+] 0.5464 120 6 -5.81 -0.1259 MIMAT0005467 dme-miR-190 31902 Gga guugguucUUAU-AGUUUGUAUAga |||| | :|||||| --------AAUACCCCGACAUAUaa 3 17 1 17 [dm3:X:9498047-9498063:+] 0.6440 131 0 -4.87 -0.2744 MIMAT0005480 dme-miR-965 31902 Gga uuccccuuuucgAUAUGCGAau |:|||||| auuguauguguaUGUACGCUga 3 11 145 166 [dm3:X:9498191-9498212:+] 0.4676 126 0 -9.75 -0.1087

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Gga RAID00502066 dme-miR-11-3p miRNA MIMAT0000116 Gga mRNA 31902 Prediction 0.1828 Gga RAID00549637 dme-miR-184-3p miRNA MIMAT0000331 Gga mRNA 31902 Prediction 0.1828 Gga RAID00569913 dme-miR-190-5p miRNA MIMAT0005467 Gga mRNA 31902 Prediction 0.1828 Gga RAID00657562 dme-miR-316-5p miRNA MIMAT0000408 Gga mRNA 31902 Prediction 0.1828 Gga RAID01094982 dme-miR-315-5p miRNA MIMAT0000407 Gga mRNA 31902 Prediction 0.1828 Gga RAID01133788 dme-miR-929-3p miRNA MIMAT0005511 Gga mRNA 31902 Prediction 0.1828 Gga RAID01176937 dme-miR-277-3p miRNA MIMAT0000338 Gga mRNA 31902 Prediction 0.2202 Gga RAID01565832 dme-miR-306-5p miRNA MIMAT0000393 Gga mRNA 31902 Prediction 0.1828 Gga RAID01654844 dme-miR-965-3p miRNA MIMAT0005480 Gga mRNA 31902 Prediction 0.1828 Gga RAID02886177 dme-mir-13b-1 miRNA MI0000134 Gga mRNA 31902 Prediction 0.1828 Gga RAID02979275 dme-mir-2a-1 miRNA MI0000117 Gga mRNA 31902 Prediction 0.1828