DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 32000 CG1826 ugguCAUGGACUACAUUAUGAGu ||||:||| ||||||| uuuuGUACUUGA---AAUACUCc 2 20 27 46 [dm3:X:10665132-10665151:+] 0.4152 159 7 -16.15 -0.2529 MIMAT0005499 dme-miR-983 32000 CG1826 agUAAUCAAGCUUUGC-AUAAUa |||:|||: :|| ||||| auAUUGGUUU--UGCGUUAUUAc 2 21 164 184 [dm3:X:10665269-10665289:+] 0.3897 121 0 -11.54 -0.2506 MIMAT0011791 dme-miR-2283 32000 CG1826 uaacagcauAAGUACUAUAAAAg || :| ||||||| ucuccgcgcUUAGUUAUAUUUUg 2 15 67 89 [dm3:X:10665172-10665194:+] 0.3897 150 7 -4.46 -0.1856 MIMAT0012206 dme-miR-2496* 32000 CG1826 augcUACCGGAGAGUGUGUGCGUg || |::| | ::|||||| ugucAUAGUUUGUAUUGCACGCAa 2 21 582 605 [dm3:X:10665687-10665710:+] 0.5190 140 6 -13.58 -0.2203 MIMAT0012213 dme-miR-2499 32000 CG1826 augccugcacuUACAGUAGGCGUa || | ||||||| caaaucaauccAUUUGAUCCGCAa 2 14 497 520 [dm3:X:10665602-10665625:+] 0.5190 149 7 -15.47 -0.6475 MIMAT0012214 dme-miR-2500* 32000 CG1826 ccAUAACA-UA--UACACA-CAAGGAAUg |||||| || | | ||||||| uuUAUUGUGAUCCAAAAAUAAUUCCUUAu 2 24 244 272 [dm3:X:10665349-10665377:+] 0.4778 144 7 -11.29 -1.0383 MIMAT0000106 dme-miR-2a 32000 CG1826 cgAGUAGU-UUCGACCGACACUAu |: |:| || :| :|||||| ugUUUUUAUAAUUUUAUUGUGAUc 2 22 232 255 [dm3:X:10665337-10665360:+] 0.4322 136 6 -9.81 -0.1141 MIMAT0000107 dme-miR-2b 32000 CG1826 cgAGGAGU-UUCGACCGACACUAu |::|:| || :| :|||||| ugUUUUUAUAAUUUUAUUGUGAUc 2 22 232 255 [dm3:X:10665337-10665360:+] 0.4322 140 6 -10.06 -0.1141 MIMAT0000108 dme-miR-3 32000 CG1826 acucuguguGAAACGGGUCACu | || ||||||| uuaucuaguCCUU-CCCAGUGc 2 14 108 128 [dm3:X:10665213-10665233:+] 0.3897 143 7 -14.12 -0.1508 MIMAT0000109 dme-miR-4 32000 CG1826 aguUACCA-ACAGAUCGA-AAUa :|||| ||| ||||| ||| ccuGUGGUCUGU-UAGCUGUUAg 2 19 45 66 [dm3:X:10665150-10665171:+] 0.4206 127 0 -12.48 -0.2752 MIMAT0000110 dme-miR-5 32000 CG1826 guaUAGUGUUGCUAGCAAGGAAa ||| ||| || |||||| gugAUC-CAAAAAUAAUUCCUUa 2 21 250 271 [dm3:X:10665355-10665376:+] 0.4778 130 6 -11.14 -0.1871 MIMAT0000111 dme-miR-6 32000 CG1826 uuuuUCUUGUCGGUGACACUAu | ||: ::|:|||||| uuuuAUAAU-UUUAUUGUGAUc 2 19 235 255 [dm3:X:10665340-10665360:+] 0.4322 132 6 -9.88 -0.1141 MIMAT0000112 dme-miR-7 32000 CG1826 uguuguuuUAGU-GAUCA-GAAGGu :|:| ||||| ||||| cugcucuuGUUAUCUAGUCCUUCCc 2 16 99 123 [dm3:X:10665204-10665228:+] 0.3897 122 0 -13.87 -0.1843 MIMAT0000116 dme-miR-11 32000 CG1826 cguUCUUGAGUCUGACACUAc | ||:|: |:|||||| uuuAUAAUUU-UAUUGUGAUc 2 19 236 255 [dm3:X:10665341-10665360:+] 0.4322 136 6 -8.99 -0.1119 MIMAT0000118 dme-miR-13a 32000 CG1826 ugAGUAGUUUUACCGACACUAu |:|| || | :|||||| uuUUAU-AAUUUUAUUGUGAUc 2 21 235 255 [dm3:X:10665340-10665360:+] 0.4322 134 6 -8.09 -0.1130 MIMAT0000119 dme-miR-13b 32000 CG1826 ugAGCAGUUUU--ACCGACACUAu |: |:| || | :|||||| ugUUUUUAUAAUUUUAUUGUGAUc 2 21 232 255 [dm3:X:10665337-10665360:+] 0.4322 131 6 -7.05 -0.1130 MIMAT0000341 dme-miR-279 32000 CG1826 aauuacucACACCUAGAUCAGu ||| |||||||| gcugcucuUGU-UAUCUAGUCc 2 15 98 118 [dm3:X:10665203-10665223:+] 0.3897 148 7 -10.72 -0.3353 MIMAT0000359 dme-miR-286 32000 CG1826 ucgugcucACAAGCCAGAUCAGu |||| ||||||| gcugcucuUGUU--AUCUAGUCc 2 16 98 118 [dm3:X:10665203-10665223:+] 0.3897 144 7 -11.89 -0.3298 MIMAT0000399 dme-miR-308 32000 CG1826 gagugucAUAUUAG---GACACUAa ||||||: :|||||| auguuuuUAUAAUUUUAUUGUGAUc 2 16 231 255 [dm3:X:10665336-10665360:+] 0.4322 138 6 -9.96 -0.1119 MIMAT0000401 dme-miR-309 32000 CG1826 auccuGUUUGAAAUGGGUCACg :|: | || ||||||| uuaucUAGUCCUU-CCCAGUGc 2 18 108 128 [dm3:X:10665213-10665233:+] 0.3897 147 7 -16.54 -0.1508 MIMAT0000406 dme-miR-314 32000 CG1826 ggcuugaauaaccGAGCUUAu ||||||| uguuuaacgcgaaCUCGAAUg 2 9 380 400 [dm3:X:10665485-10665505:+] 0.4975 140 7 -13.42 -0.3308 MIMAT0000410 dme-miR-318 32000 CG1826 acucuauuuguuucGGGUCACu ||||||| guuaucuaguccuuCCCAGUGc 2 9 107 128 [dm3:X:10665212-10665233:+] 0.3897 140 7 -13.63 -0.1609 MIMAT0000411 dme-miR-2c 32000 CG1826 cggguAGU-UUCGACCGACACUAu |:| || :| :|||||| uguuuUUAUAAUUUUAUUGUGAUc 2 19 232 255 [dm3:X:10665337-10665360:+] 0.4322 133 6 -8.98 -0.1141 MIMAT0000412 dme-miR-iab-4-5p 32000 CG1826 aguccuaUGUAAGUCAUAUGCa | ||| ||||||| ugaaccaAAAUU--GUAUACGa 2 16 416 435 [dm3:X:10665521-10665540:+] 0.5443 144 7 -8.43 -1.1647 MIMAT0005467 dme-miR-190 32000 CG1826 guUGGUUCUUAUAGUUUG-UAUAGa ||||| ||| :| || ||||| gaACCAA-AAUUGUAUACGAUAUCc 2 23 417 440 [dm3:X:10665522-10665545:+] 0.5317 132 0 -12.18 -0.8508 MIMAT0005474 dme-miR-960 32000 CG1826 cgAUACGUUAGACCUUAUGAGu | ||:| | || ||||||| guUUUGUACU-UGAAAUACUCc 2 21 26 46 [dm3:X:10665131-10665151:+] 0.4152 158 7 -11.91 -0.2779 MIMAT0005476 dme-miR-962 32000 CG1826 cuGUCGUAGUUA---A--AGAGAU-GGAAUa :||:|| ||| | | |||| ||||| caUAGUAUAAAUCUGUACUGUCUAGCCUUAu 2 24 446 476 [dm3:X:10665551-10665581:+] 0.5190 125 0 -14.70 -0.2730 MIMAT0005507 dme-miR-137 32000 CG1826 gaugCACAUAAG-A-GUUCGUUAu || ||||: | :||||||| cagaGU-UAUUUAUAUAAGCAAUa 2 19 286 308 [dm3:X:10665391-10665413:+] 0.5101 150 7 -10.75 -1.2283 MIMAT0005513 dme-miR-994 32000 CG1826 uagugccgaUGAUAAAGGAAUc | || ||||||| ugauccaaaAAUAAUUCCUUAu 2 14 251 272 [dm3:X:10665356-10665377:+] 0.4778 149 7 -6.83 -1.0410 MIMAT0005515 dme-miR-996 32000 CG1826 ucugcucGUACUUUAGAUCAGu | || |||||||| ugcugcuCUUGUUAUCUAGUCc 2 16 97 118 [dm3:X:10665202-10665223:+] 0.3897 151 7 -13.99 -0.3353

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score BTBD9 RAID00027589 dme-miR-13b-3p miRNA MIMAT0000119 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID00187337 dme-miR-4-3p miRNA MIMAT0000109 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID00448823 dme-miR-994-5p miRNA MIMAT0005513 BTBD9 mRNA 32000 Prediction 0.2202 BTBD9 RAID00503028 dme-miR-960-5p miRNA MIMAT0005474 BTBD9 mRNA 32000 Prediction 0.2202 BTBD9 RAID00703605 dme-miR-314-3p miRNA MIMAT0000406 BTBD9 mRNA 32000 Prediction 0.2202 BTBD9 RAID00713047 dme-miR-318-3p miRNA MIMAT0000410 BTBD9 mRNA 32000 Prediction 0.2202 BTBD9 RAID00784719 dme-miR-279-3p miRNA MIMAT0000341 BTBD9 mRNA 32000 Prediction 0.2381 BTBD9 RAID00792347 dme-miR-996-3p miRNA MIMAT0005515 BTBD9 mRNA 32000 Prediction 0.2381 BTBD9 RAID00917288 dme-miR-962-5p miRNA MIMAT0005476 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID00987216 dme-miR-308-3p miRNA MIMAT0000399 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID01527656 dme-miR-2a-3p miRNA MIMAT0000106 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID01532464 dme-miR-12-5p miRNA MIMAT0000117 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID01659286 dme-miR-966-5p miRNA MIMAT0005481 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID01735124 dme-miR-5-5p miRNA MIMAT0000110 BTBD9 mRNA 32000 Prediction 0.2202 BTBD9 RAID01854353 dme-miR-13a-3p miRNA MIMAT0000118 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID01988927 dme-miR-3-3p miRNA MIMAT0000108 BTBD9 mRNA 32000 Prediction 0.2202 BTBD9 RAID02056386 dme-miR-iab-4-5p miRNA MIMAT0000412 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID02153863 dme-miR-7-5p miRNA MIMAT0000112 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID02439828 dme-miR-286-3p miRNA MIMAT0000359 BTBD9 mRNA 32000 Prediction 0.2381 BTBD9 RAID02537735 dme-miR-190-5p miRNA MIMAT0005467 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID02674976 dme-miR-309-3p miRNA MIMAT0000401 BTBD9 mRNA 32000 Prediction 0.2202 BTBD9 RAID03151827 dme-miR-137-3p miRNA MIMAT0005507 BTBD9 mRNA 32000 Prediction 0.2202 BTBD9 RAID03257585 dme-miR-11-3p miRNA MIMAT0000116 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID03489279 dme-miR-2c-3p miRNA MIMAT0000411 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID03764282 dme-miR-2b-3p miRNA MIMAT0000107 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID03824508 dme-mir-iab-4 miRNA MI0000432 BTBD9 mRNA 32000 Prediction 0.1828 BTBD9 RAID03844367 dme-miR-6-3p miRNA MIMAT0000111 BTBD9 mRNA 32000 Prediction 0.1828