DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 32153 Upf1 cacGUUUGCUA---AAAGUUGUGu |||||||| |||||| cuaCAAACGAUAACAAGCAACACa 2 19 24 47 [dm3:X:11795224-11795247:-] 0.5547 125 6 -21.07 -0.1940 MIMAT0005495 dme-miR-979 32153 Upf1 aaUCGGACUCAAGCCCU-UCUu || ||||| ||||| ||| gaAGACUGAG-ACGGGAGAGAg 2 20 274 294 [dm3:X:11794977-11794997:-] 0.4654 129 0 -22.44 -0.3774 MIMAT0005502 dme-miR-985 32153 Upf1 acgggcuGGUAACCUUGUAAAc |::|| ||||||| uuagcucCUGUUUUAACAUUUu 2 16 659 680 [dm3:X:11794591-11794612:-] 0.5393 151 7 -10.28 -0.6567 MIMAT0005029 dme-miR-1016 32153 Upf1 gaUUCAUACCUCUCUCCACuu :| | || :|||||| --GAAUCCGGUUGGAGGUGca 3 20 1 19 [dm3:X:11795252-11795270:-] 0.6280 127 0 -13.73 -0.1206 MIMAT0012199 dme-miR-2492 32153 Upf1 aaacuuucgagagcugUUUUGUa |||||| uauccuaacaaacacgAAAACAa 2 8 763 785 [dm3:X:11794486-11794508:-] 0.5180 120 6 -5.36 -0.1012 MIMAT0012199 dme-miR-2492 32153 Upf1 aaacuuucgagagcugUUUUGUa |||||| aaaacaaaaucaaacaAAAACAa 2 8 779 801 [dm3:X:11794470-11794492:-] 0.5063 120 6 -3.51 -0.1270 MIMAT0012205 dme-miR-2495* 32153 Upf1 ccgcccgUAAAGUUAA--UCCACGgc | | |::|| |||||| ------gAAUCCGGUUGGAGGUGCaa 3 18 1 20 [dm3:X:11795251-11795270:-] 0.6280 128 0 -13.03 -0.1015 MIMAT0012205 dme-miR-2495* 32153 Upf1 ccgCCCGUAAAGUUA-AUCC-ACGGc | ||| ||| | |||| |||| cgaGAGCAAAUCACUGUAGGCUGCCa 2 22 315 340 [dm3:X:11794931-11794956:-] 0.5269 128 0 -17.71 -0.5703 MIMAT0012215 dme-miR-2500 32153 Upf1 gacuccagGUGUGUGUUUUAGg |: | |||||||| aacaaacaCGAAAACAAAAUCa 2 15 769 790 [dm3:X:11794481-11794502:-] 0.5063 150 7 -15.53 -1.3010 MIMAT0012215 dme-miR-2500 32153 Upf1 gacuccagguGUGUGUUUUAGg || |||||| | aaaacaaaauCAAACAAAAACa 2 13 779 800 [dm3:X:11794471-11794492:-] 0.5063 120 0 -7.56 -0.1827 MIMAT0000120 dme-miR-14 32153 Upf1 auccUCUCUCUUU-UUCUGACu || | ||| ||||||| acaaAGUAAUAAAGAAGACUGa 2 18 261 282 [dm3:X:11794989-11795010:-] 0.4654 152 7 -14.38 -0.6730 MIMAT0000334 dme-miR-92a 32153 Upf1 uauccGGCC-CUGUUCACGUUac |||| : |:|||||| -gaauCCGGUUGGAGGUGCAAca 3 18 1 22 [dm3:X:11795249-11795270:-] 0.6280 132 0 -17.86 -0.1173 MIMAT0000338 dme-miR-277 32153 Upf1 acagcauggucuAUCACGUAAAu |: ||||||| uggacucuuuuuUGAUGCAUUUg 2 12 739 761 [dm3:X:11794510-11794532:-] 0.5297 143 7 -8.24 -0.8884 MIMAT0000339 dme-miR-278 32153 Upf1 uuugccugcuuucAGGGUGGcu ||||||| uguuuuaacauuuUCCCACCca 3 10 667 688 [dm3:X:11794583-11794604:-] 0.5297 125 0 -11.70 -0.1064 MIMAT0000342 dme-miR-33 32153 Upf1 guUACG-CUGAUGUUACG-UGGa |||| |: ||||||| ||| agAUGCGGGAAACAAUGCGACCu 2 20 146 168 [dm3:X:11795103-11795125:-] 0.5192 130 0 -24.17 -0.4963 MIMAT0000391 dme-miR-305 32153 Upf1 gucUCGUGGACUACUUC-AUGUUa :||| :||:|| ||||| uauGGCAAGAUGUGGAGUUACAAa 2 21 242 265 [dm3:X:11795006-11795029:-] 0.4654 120 0 -14.43 -0.7919 MIMAT0000402 dme-miR-310 32153 Upf1 uuuccGGCC--CUUCACACGUUau |||| |:|| |||||| -gaauCCGGUUGGAG-GUGCAAca 3 18 1 22 [dm3:X:11795249-11795270:-] 0.6280 134 0 -19.64 -0.1086 MIMAT0000403 dme-miR-311 32153 Upf1 aguccGGCC-ACUUACACGUUau |||| ||:| |||||| -gaauCCGGUUGGAGGUGCAAca 3 18 1 22 [dm3:X:11795249-11795270:-] 0.6280 144 0 -19.84 -0.1150 MIMAT0000404 dme-miR-312 32153 Upf1 aguccGGCAGAGUUCACGUUau | ||: |:|||||| gaaucCGGUUGGAGGUGCAAca 3 18 1 22 [dm3:X:11795249-11795270:-] 0.6280 133 0 -16.18 -0.1185 MIMAT0000405 dme-miR-313 32153 Upf1 agcccGACACUUUUCACGUUau | || ::|:|||||| gaaucCGGUUGGAGGUGCAAca 3 18 1 22 [dm3:X:11795249-11795270:-] 0.6280 137 0 -16.62 -0.1196 MIMAT0000407 dme-miR-315 32153 Upf1 cgaaagacUCGUUGUUAGUUUu | ||| ||||||| aacacgaaAACAA-AAUCAAAc 2 15 773 793 [dm3:X:11794478-11794498:-] 0.5063 148 7 -5.96 -0.6941 MIMAT0005472 dme-miR-375 32153 Upf1 auugaaUUCGGUUUGC-UUGUUu || |||||| ||||| acaagcAACACAAACGAAACAAc 2 17 36 58 [dm3:X:11795213-11795235:-] 0.5547 128 0 -12.59 -0.9536 MIMAT0005497 dme-miR-981 32153 Upf1 acguccaaaGCAGCUGUUGCUu || ||||||| ggaccaucaCGGGAACAACGAc 2 14 124 145 [dm3:X:11795126-11795147:-] 0.5306 141 7 -12.34 -0.2646

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Upf1 RAID00117945 dme-miR-981-3p miRNA MIMAT0005497 Upf1 mRNA 32153 Prediction 0.2202 Upf1 RAID00707076 dme-miR-313-3p miRNA MIMAT0000405 Upf1 mRNA 32153 Prediction 0.1828 Upf1 RAID01112483 dme-miR-972-3p miRNA MIMAT0005488 Upf1 mRNA 32153 Prediction 0.1828 Upf1 RAID01345980 dme-miR-33-5p miRNA MIMAT0000342 Upf1 mRNA 32153 Prediction 0.1828 Upf1 RAID01387537 dme-miR-305-5p miRNA MIMAT0000391 Upf1 mRNA 32153 Prediction 0.1828 Upf1 RAID01474675 dme-miR-1015-3p miRNA MIMAT0005028 Upf1 mRNA 32153 Prediction 0.1828 Upf1 RAID01539646 dme-miR-312-3p miRNA MIMAT0000404 Upf1 mRNA 32153 Prediction 0.1828 Upf1 RAID01883410 dme-miR-278-3p miRNA MIMAT0000339 Upf1 mRNA 32153 Prediction 0.1828 Upf1 RAID01985676 dme-miR-375-3p miRNA MIMAT0005472 Upf1 mRNA 32153 Prediction 0.1828 Upf1 RAID02389931 dme-miR-311-3p miRNA MIMAT0000403 Upf1 mRNA 32153 Prediction 0.1828 Upf1 RAID02524179 dme-miR-14-3p miRNA MIMAT0000120 Upf1 mRNA 32153 Prediction 0.2202 Upf1 RAID02741714 dme-miR-92a-3p miRNA MIMAT0000334 Upf1 mRNA 32153 Prediction 0.1828 Upf1 RAID02757669 dme-miR-277-3p miRNA MIMAT0000338 Upf1 mRNA 32153 Prediction 0.2202 Upf1 RAID03270905 dme-miR-310-3p miRNA MIMAT0000402 Upf1 mRNA 32153 Prediction 0.1828 Upf1 RAID03472352 dme-miR-315-5p miRNA MIMAT0000407 Upf1 mRNA 32153 Prediction 0.2202 Upf1 RAID03779890 dme-miR-985-3p miRNA MIMAT0005502 Upf1 mRNA 32153 Prediction 0.1828