DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 32195 Rab40 gccCCGCUCUCUUACUAUUcc ||||| | |||||| aaaGGCGA---AUUGAUAAaa 3 19 536 553 [dm3:X:12353846-12353863:-] 0.4664 130 0 -11.61 -0.1532 MIMAT0000360 dme-miR-287 32195 Rab40 cacGUUUGCUAAAAGUUGUGu ||||| | ||||||: cauCAAAC-A-CAUCAACAUa 2 19 356 374 [dm3:X:12354025-12354043:-] 0.4664 130 0 -12.92 -0.1496 MIMAT0000364 dme-miR-289 32195 Rab40 ucaGCGUCCGAGGUGAAUUUAUAAAu :|: |: : |:| ||||||| uuaUGUUUGUAUAAUUCUAAUAUUUa 2 24 327 352 [dm3:X:12354047-12354072:-] 0.4664 147 7 -9.75 -1.2474 MIMAT0005509 dme-miR-991 32195 Rab40 ugaaagGUUUGAUGUUGAAAUu | :|| :||||||| cccuaaCCGACAUUAACUUUAa 2 17 45 66 [dm3:X:12354333-12354354:-] 0.5750 148 7 -12.76 -1.1407 MIMAT0010206 dme-miR-995* 32195 Rab40 gcgucgaggguguauUAAGCCc |||||| uuuuguuuguuuaccAUUCGGa 2 8 455 476 [dm3:X:12353923-12353944:-] 0.4664 120 6 -10.92 -0.2054 MIMAT0005026 dme-miR-1013 32195 Rab40 gcucaagccGUAUGAAAAUa || ||||||| agugaaaauCA-ACUUUUAu 2 12 411 429 [dm3:X:12353970-12353988:-] 0.4664 141 7 -7.25 -0.9896 MIMAT0005028 dme-miR-1015 32195 Rab40 gacguucucucuacAGGGUCCu ||||||| uuuaaccacccccaUCCCAGGc 2 9 255 276 [dm3:X:12354123-12354144:-] 0.4664 140 7 -13.69 -0.2543 MIMAT0011784 dme-miR-2279* 32195 Rab40 uuAAAGUG-UGUGUCUAUAAAUu || :|: |: | ||||||| guUUGUAUAAUUCUAAUAUUUAa 2 21 331 353 [dm3:X:12354046-12354068:-] 0.4664 147 7 -6.93 -1.2386 MIMAT0011791 dme-miR-2283 32195 Rab40 uaAC-AGCAUA--AGUACUAUAAAag || |:|||| |: | |||||| uaUGUUUGUAUAAUUCUAAUAUUUaa 3 22 328 353 [dm3:X:12354046-12354071:-] 0.4664 139 0 -6.35 -0.1141 MIMAT0012199 dme-miR-2492 32195 Rab40 aaacuuucgagagcugUUUUGUa |||||| aacauauaagaaaugaAAAACAa 2 8 369 391 [dm3:X:12354008-12354030:-] 0.4664 120 6 -6.52 -0.1437 MIMAT0012209 dme-miR-2497 32195 Rab40 gaCGUUUGUAACAUUUACAACa || | :| | | ||||||| uuGC-AUUAAUCU-AAUGUUGu 2 21 299 318 [dm3:X:12354081-12354100:-] 0.4664 144 7 -12.54 -1.0553 MIMAT0012215 dme-miR-2500 32195 Rab40 gacuccaggugugugUUUUAGg |||||| aaauaacaucaagugAAAAUCa 2 8 400 421 [dm3:X:12353978-12353999:-] 0.4664 120 6 -6.32 -0.1768 MIMAT0012217 dme-miR-2501* 32195 Rab40 uuucuuucaaacUAA--CGUUCUCa ||| ||||||| uaauugaagcgaAUUCAGCAAGAGa 2 12 502 526 [dm3:X:12353873-12353897:-] 0.4664 142 7 -11.21 -0.9715 MIMAT0000114 dme-miR-9a 32195 Rab40 agUAUGUCGAUCUAU-----UG-GUUUCu || |||| ||| | || ||||| gaAUUCAGCAAGAGAAGCACACACAAAGg 2 22 512 540 [dm3:X:12353859-12353887:-] 0.4664 120 0 -14.22 -0.6032 MIMAT0000338 dme-miR-277 32195 Rab40 acagcAUGGUCUAUCACGUAAau | |: || |||||| ccaacUUCUCUAUUUUGCAUUaa 3 19 285 307 [dm3:X:12354092-12354114:-] 0.4664 126 0 -4.67 -0.1197 MIMAT0000342 dme-miR-33 32195 Rab40 guuacgcUGAUGU--UACGUGGa | || | ||||||| uuuacacAGUAAAGCAUGCACCu 2 15 223 245 [dm3:X:12354154-12354176:-] 0.4664 141 7 -13.97 -0.6459 MIMAT0000347 dme-miR-283 32195 Rab40 ucuUAAUGGUCGACUAUAAAu |||: || :|||||||| uuuAUUGACA-UUGAUAUUUg 2 19 184 203 [dm3:X:12354196-12354215:-] 0.4698 160 7 -11.86 -0.7861 MIMAT0000347 dme-miR-283 32195 Rab40 ucuuaauggucgacUAUAAAu |||||| uuuguauaauucuaAUAUUUa 2 8 332 352 [dm3:X:12354047-12354067:-] 0.4664 120 6 -5.19 -0.2274 MIMAT0000408 dme-miR-316 32195 Rab40 gcggucAUUCGCCUUUUUCUgu || | ||||||| cuuuuaUAUGGAUAAAAAGAau 3 17 423 444 [dm3:X:12353955-12353976:-] 0.4664 128 0 -8.57 -0.1316 MIMAT0005467 dme-miR-190 32195 Rab40 guUGGUUCUUAUAGUUUGUAUAga |:||| | ||| ||||||| gcAUCAAACACAUC-AACAUAUaa 3 23 355 377 [dm3:X:12354022-12354044:-] 0.4664 148 0 -10.96 -0.1124 MIMAT0005478 dme-miR-964 32195 Rab40 uucAAUUCGAGGGGA-UAAGAUu ||| |:|: : | |||||| uuaUUAUGUUUGUAUAAUUCUAa 2 20 324 346 [dm3:X:12354053-12354075:-] 0.4664 123 6 -8.32 -1.2282 MIMAT0005483 dme-miR-1002 32195 Rab40 agcggGAAA--CAUAGGUGAUGAAUu |||| |: | ||||||| auuaaCUUUAAUUGAGCUCUACUUAu 2 20 56 81 [dm3:X:12354318-12354343:-] 0.5750 146 7 -11.03 -0.7972 MIMAT0005487 dme-miR-971 32195 Rab40 agUGACAUUCUUCAUUGUG-GUu ||| ||:| |||||| || guACUCUAGGCUAUAACACACAc 2 21 82 104 [dm3:X:12354295-12354317:-] 0.5750 128 0 -12.89 -0.9237 MIMAT0005501 dme-miR-927 32195 Rab40 ccauuucGCAUCCUUAAGAUUu :||| |||||||| uuauguuUGUA-UAAUUCUAAu 2 16 327 347 [dm3:X:12354052-12354072:-] 0.4664 149 7 -7.99 -1.1737 MIMAT0005504 dme-miR-987 32195 Rab40 guaGUUAGGUCUGAUAAAUGAAAu :::|| | | |:|||||||| uugUGGUCAACAAUGUUUACUUUu 2 22 201 224 [dm3:X:12354175-12354198:-] 0.4681 165 7 -12.13 -0.8799 MIMAT0005027 dme-miR-1014 32195 Rab40 gacguUUACUUUUACU-UAAAa | ||| | ||| |||| guuuuAUUGACAUUGAUAUUUg 2 17 182 203 [dm3:X:12354196-12354217:-] 0.4698 120 0 -3.20 -0.7762

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rab40 RAID00013996 dme-miR-1014-3p miRNA MIMAT0005027 Rab40 mRNA 32195 Prediction 0.1828 Rab40 RAID00440248 dme-miR-927-5p miRNA MIMAT0005501 Rab40 mRNA 32195 Prediction 0.2202 Rab40 RAID00467374 dme-miR-971-3p miRNA MIMAT0005487 Rab40 mRNA 32195 Prediction 0.1828 Rab40 RAID00582464 dme-miR-277-3p miRNA MIMAT0000338 Rab40 mRNA 32195 Prediction 0.1828 Rab40 RAID01397270 dme-miR-316-5p miRNA MIMAT0000408 Rab40 mRNA 32195 Prediction 0.1828 Rab40 RAID01473198 dme-miR-964-5p miRNA MIMAT0005478 Rab40 mRNA 32195 Prediction 0.2202 Rab40 RAID01526282 dme-miR-987-5p miRNA MIMAT0005504 Rab40 mRNA 32195 Prediction 0.2202 Rab40 RAID01790633 dme-miR-932-5p miRNA MIMAT0005479 Rab40 mRNA 32195 Prediction 0.1828 Rab40 RAID01871275 dme-miR-1013-3p miRNA MIMAT0005026 Rab40 mRNA 32195 Prediction 0.1828 Rab40 RAID01994946 dme-miR-991-3p miRNA MIMAT0005509 Rab40 mRNA 32195 Prediction 0.1828 Rab40 RAID02282106 dme-miR-1015-3p miRNA MIMAT0005028 Rab40 mRNA 32195 Prediction 0.1828 Rab40 RAID02374529 dme-miR-283-5p miRNA MIMAT0000347 Rab40 mRNA 32195 Prediction 0.2202 Rab40 RAID02665554 dme-miR-33-5p miRNA MIMAT0000342 Rab40 mRNA 32195 Prediction 0.1828 Rab40 RAID02680215 dme-miR-190-5p miRNA MIMAT0005467 Rab40 mRNA 32195 Prediction 0.1828 Rab40 RAID02955969 dme-miR-968-5p miRNA MIMAT0005484 Rab40 mRNA 32195 Prediction 0.1828 Rab40 RAID03403491 dme-miR-1002-5p miRNA MIMAT0005483 Rab40 mRNA 32195 Prediction 0.2202 Rab40 RAID03582414 dme-miR-9a-5p miRNA MIMAT0000114 Rab40 mRNA 32195 Prediction 0.1828