DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 32330 CG9941 ucAGCGUCCGAGGUGAAUUUAUAAAu ||||||| || |||||||| gcUCGCAGG---AAC--AAAUAUUUu 2 25 110 130 [dm3:X:13613079-13613099:-] 0.4806 157 7 -17.73 -0.5857 MIMAT0000364 dme-miR-289 32330 CG9941 ucAGCGUCCGAGGUGAAUUUAUAAau |:| ||| | :|: | |||||| uuUUG-AGGAU-UAUAUUAAUAUUaa 3 25 127 150 [dm3:X:13613059-13613082:-] 0.4806 136 0 -7.88 -0.2563 MIMAT0005465 dme-miR-954 32330 CG9941 ugUGUG-UUGCG-UUGUGG-GUCu |:|| ||| | |||||| ||| acAUACAAACACUAACACCACAGa 2 20 285 308 [dm3:X:13612901-13612924:-] 0.5374 129 0 -24.95 -0.9058 MIMAT0005022 dme-miR-1009 32330 CG9941 gacuuuaCAUUG-UUA-AAAACUCu | ||| ||| ||||||| gcucgcaGGAACAAAUAUUUUGAGg 2 17 110 134 [dm3:X:13613075-13613099:-] 0.4806 154 7 -12.47 -1.0627 MIMAT0011784 dme-miR-2279* 32330 CG9941 uuaAAGUGUGUGUCU-AUAAAUu ||::|:: :| | |||||| agcUUUGCGUUUAUACUAUUUAu 2 20 45 67 [dm3:X:13613142-13613164:-] 0.4806 123 6 -4.99 -0.7392 MIMAT0011791 dme-miR-2283 32330 CG9941 uaacagcauaaguacUAUAAAAg ||||||| cgcucgcaggaacaaAUAUUUUg 2 9 109 131 [dm3:X:13613078-13613100:-] 0.4806 140 7 -3.32 -0.6883 MIMAT0012201 dme-miR-2493 32330 CG9941 ugcggaGCGUGUUUAUGUGUGCc | |: ||| ||||||| cacagaCACGAAAAGACACACGu 2 18 303 325 [dm3:X:13612884-13612906:-] 0.5374 157 7 -18.43 -0.4396 MIMAT0000105 dme-miR-1 32330 CG9941 gagGUAUGAAGAAAUGUAAGGu | || | |||||||| gcgCCUAGGGCGCUACAUUCCa 2 20 409 430 [dm3:X:13612779-13612800:-] 0.5648 147 7 -18.26 -0.2656 MIMAT0000352 dme-miR-79 32330 CG9941 uaCGAAACCAUUAGAUCGAAAu |:||| : |:||||||| ucGUUUUCUCGUUUUAGCUUUg 2 21 30 51 [dm3:X:13613158-13613179:-] 0.4806 156 7 -12.71 -0.5678 MIMAT0000390 dme-miR-304 32330 CG9941 gaGUGUAAAUGUUU----AACU-CUAAu |:|| ||||| |||| |||| cuCGCAGGAACAAAUAUUUUGAGGAUUa 2 22 111 138 [dm3:X:13613071-13613098:-] 0.4806 120 0 -17.98 -1.2887 MIMAT0000408 dme-miR-316 32330 CG9941 gcGGUCAUUCGCCUUUUUCUGu ||| |: | :||||||| caCCA-CAGACACGAAAAGACa 2 21 300 320 [dm3:X:13612889-13612909:-] 0.5374 146 7 -13.78 -0.4838 MIMAT0005487 dme-miR-971 32330 CG9941 agugacaUUCUUCAUUGUGGUu || | |||||||| uacauacAAACACUAACACCAc 2 16 284 305 [dm3:X:13612904-13612925:-] 0.5374 151 7 -11.48 -0.7753 MIMAT0005492 dme-miR-976 32330 CG9941 cguaacUACUAUUGAUUAGGUu || | ||: |||||| uaacaaAU-AAAAUAAAUCCAa 2 17 379 399 [dm3:X:13612810-13612830:-] 0.5648 122 6 -8.01 -0.2187 MIMAT0005024 dme-miR-1011 32330 CG9941 gacgcucgcuaaacuuGGUUAUu |||||| aacaaauaaaauaaauCCAAUAa 2 8 380 402 [dm3:X:13612807-13612829:-] 0.5648 120 6 -7.16 -0.1302 MIMAT0005027 dme-miR-1014 32330 CG9941 gacguuuacuuuuACUUAAAa ||||||| agccggucucgguUGAAUUUc 2 9 1 21 [dm3:X:13613188-13613208:-] 0.6306 140 7 -8.83 -0.3031

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG9941 RAID00006201 dme-miR-1011-3p miRNA MIMAT0005024 CG9941 mRNA 32330 Prediction 0.2202 CG9941 RAID00849675 dme-miR-1014-3p miRNA MIMAT0005027 CG9941 mRNA 32330 Prediction 0.2202 CG9941 RAID01285757 dme-miR-1009-3p miRNA MIMAT0005022 CG9941 mRNA 32330 Prediction 0.1828 CG9941 RAID01822552 dme-miR-79-3p miRNA MIMAT0000352 CG9941 mRNA 32330 Prediction 0.2202 CG9941 RAID01893790 dme-miR-304-5p miRNA MIMAT0000390 CG9941 mRNA 32330 Prediction 0.1828 CG9941 RAID02345137 dme-miR-971-3p miRNA MIMAT0005487 CG9941 mRNA 32330 Prediction 0.2202 CG9941 RAID02463936 dme-miR-316-5p miRNA MIMAT0000408 CG9941 mRNA 32330 Prediction 0.2202 CG9941 RAID02917661 dme-miR-1-3p miRNA MIMAT0000105 CG9941 mRNA 32330 Prediction 0.2202 CG9941 RAID03187100 dme-miR-375-3p miRNA MIMAT0005472 CG9941 mRNA 32330 Prediction 0.1828 CG9941 RAID03210162 dme-miR-976-3p miRNA MIMAT0005492 CG9941 mRNA 32330 Prediction 0.2202