DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 32510 CG8184 auaguAAAGUAUACGU-UGCAUUUAUGu ||||: : :| |: || |||| uuaauUUUCGCGCCUAUAUAUAUAUACa 2 23 258 285 [dm3:X:15625438-15625465:+] 0.5606 121 0 -5.36 -0.2264 MIMAT0000364 dme-miR-289 32510 CG8184 ucagcguccgaggugaauuUAUAAAu |||||| cuauauauauauacaauauAUAUUUu 2 8 271 296 [dm3:X:15625451-15625476:+] 0.5479 120 6 -8.20 -0.1218 MIMAT0000388 dme-miR-303 32510 CG8184 uggucaaaggacaCUUUGGAUUu ||||||||| gaagaaaacuaagGAAACCUAAc 2 11 319 341 [dm3:X:15625499-15625521:+] 0.5353 150 7 -13.46 -0.7741 MIMAT0005495 dme-miR-979 32510 CG8184 aaucggacucaagcCCUUCUu |||||| uuucaaaagaaaacGGAAGAa 2 8 304 324 [dm3:X:15625484-15625504:+] 0.5353 120 6 -9.91 -0.1919 MIMAT0011784 dme-miR-2279* 32510 CG8184 uuaAAGUGUG-UGUCUAUAAAuu | :|:|| |:| |||||| auaUAUAUACAAUAUAUAUUUuc 3 20 275 297 [dm3:X:15625455-15625477:+] 0.5479 138 0 -8.76 -0.1911 MIMAT0011791 dme-miR-2283 32510 CG8184 uaacagcAUAAG-UA-CUAUAAAAg ||| | || ||||||| auauauaUAUACAAUAUAUAUUUUc 2 17 273 297 [dm3:X:15625453-15625477:+] 0.5479 146 7 -6.44 -1.1691 MIMAT0011791 dme-miR-2283 32510 CG8184 uaACAGCAUAAGUACUA--UAAAAg |||:| ||| || || ||||| aaUGUUGAAUUAAUUAUUAAUUUUc 2 22 242 266 [dm3:X:15625422-15625446:+] 0.5606 125 0 -8.69 -1.0337 MIMAT0012196 dme-miR-2489 32510 CG8184 ugaCGUUUAUGU-UGUAUGUUAu || |||:| |:||||||| cgcGCCUAUAUAUAUAUACAAUa 2 20 266 288 [dm3:X:15625446-15625468:+] 0.5479 162 7 -16.44 -1.3278 MIMAT0012209 dme-miR-2497 32510 CG8184 gaCGUUUGUAACAUUUACAACa |:| |:| | |||||||| uaGUAUAUA-UAAAAAUGUUGa 2 21 229 249 [dm3:X:15625409-15625429:+] 0.5606 154 7 -11.16 -1.3228 MIMAT0012214 dme-miR-2500* 32510 CG8184 ccAUAACAUAUACACACAAGGAAUg ||| |||| | | ||:|||| uaUAUACAAUAUAUAU-UUUCUUAa 2 24 278 301 [dm3:X:15625458-15625481:+] 0.5479 145 0 -5.26 -0.1072 MIMAT0000347 dme-miR-283 32510 CG8184 ucuuaauggucgacUAUAAAu |||||| uauauauacaauauAUAUUUu 2 8 276 296 [dm3:X:15625456-15625476:+] 0.5479 120 6 -4.20 -0.1206 MIMAT0000391 dme-miR-305 32510 CG8184 gucuCGUG-GACUACUUCAUGUua |||: | | |||||| aacuGCAUACAUAAACAGUACAua 3 20 197 220 [dm3:X:15625377-15625400:+] 0.5606 122 0 -8.67 -0.2417 MIMAT0005466 dme-miR-955 32510 CG8184 cuGUGAGUUUG-GAG---ACG-UGCUAc | ||||||: | | ||| ||||| cgCCCUCAAAUACACGGGUGCAACGAUg 2 22 89 116 [dm3:X:15625269-15625296:+] 0.4881 123 0 -19.21 -0.3429 MIMAT0005467 dme-miR-190 32510 CG8184 guugGU-UCUUAUAGUU-UGUAUAga || | | | ||: |||||| acugCAUACAUAAACAGUACAUAUag 3 21 198 223 [dm3:X:15625378-15625403:+] 0.5606 126 0 -6.52 -0.1711 MIMAT0005479 dme-miR-932 32510 CG8184 gacguuacgugaugcCUUAACu |||||| augcauaauugauuuGAAUUGa 2 8 121 142 [dm3:X:15625301-15625322:+] 0.5606 120 6 -13.25 -0.1755 MIMAT0005513 dme-miR-994 32510 CG8184 uagugccgAUG-AUAAAGGAAUc ||: |||||:|||| auauacaaUAUAUAUUUUCUUAa 2 15 279 301 [dm3:X:15625459-15625481:+] 0.5479 141 0 -9.93 -0.1205 MIMAT0005520 dme-miR-1000 32510 CG8184 ugacgacacuguccUGUUAUa |||||| gccuauauauauauACAAUAu 2 8 269 289 [dm3:X:15625449-15625469:+] 0.5479 120 6 -7.12 -0.3187 MIMAT0005027 dme-miR-1014 32510 CG8184 gaCGU-UUACUUUUACUUAAaa ||| ||| :| |||||| auGCAUAAUUGAUUUGAAUUga 3 20 121 142 [dm3:X:15625301-15625322:+] 0.5606 138 0 -9.87 -0.1217 MIMAT0005027 dme-miR-1014 32510 CG8184 gacGUUUACUUUU---ACUUAAaa :| || |||| |||||| guaUAUAUAAAAAUGUUGAAUUaa 3 19 231 254 [dm3:X:15625411-15625434:+] 0.5606 133 0 -6.32 -0.4062

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG8184 RAID00015301 dme-miR-303-5p miRNA MIMAT0000388 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID00237361 dme-miR-283-5p miRNA MIMAT0000347 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID00367645 dme-miR-979-3p miRNA MIMAT0005495 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID01233684 dme-miR-1014-3p miRNA MIMAT0005027 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID02103050 dme-miR-955-5p miRNA MIMAT0005466 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID02243994 dme-miR-190-5p miRNA MIMAT0005467 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID02254409 dme-miR-1000-5p miRNA MIMAT0005520 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID02366328 dme-miR-278-3p miRNA MIMAT0000339 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID02569493 dme-miR-305-5p miRNA MIMAT0000391 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID02922371 dme-miR-980-3p miRNA MIMAT0005496 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID03246677 dme-miR-932-5p miRNA MIMAT0005479 CG8184 mRNA 32510 Prediction 0.2202 CG8184 RAID03260830 dme-bantam-3p miRNA MIMAT0000365 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID03557322 dme-miR-184-3p miRNA MIMAT0000331 CG8184 mRNA 32510 Prediction 0.1828 CG8184 RAID03594765 dme-miR-994-5p miRNA MIMAT0005513 CG8184 mRNA 32510 Prediction 0.1828