DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 32522 Graf auAGUAAAGUAUACGUUG-CAUUUAUGu | || | ||| :||: ||||||: aaUAAUAUAAUA-AUAAUAAUAAAUAUu 2 26 496 522 [dm3:X:15645744-15645770:-] 0.4336 138 0 -4.29 -0.1112 MIMAT0000364 dme-miR-289 32522 Graf ucagcguccgaggugaAUUUAUAAAu ||||||||| aauauaauaauaauaaUAAAUAUUUu 2 11 499 524 [dm3:X:15645742-15645767:-] 0.4336 150 7 -7.22 -1.1153 MIMAT0005464 dme-miR-iab-4as-3p 32522 Graf auuUGCAUAUGACUUACAUAgg || ||||| ||||||| acuACAUAUAC-AAAUGUAUaa 3 20 391 411 [dm3:X:15645855-15645875:-] 0.4196 145 0 -9.72 -0.1217 MIMAT0005482 dme-miR-967 32522 Graf gcgaaGAGGUCUCCAUAGAga :| || | |||||| auggaUUACA-ACGUAUCUaa 3 17 366 385 [dm3:X:15645881-15645900:-] 0.4773 126 0 -7.78 -0.1009 MIMAT0005488 dme-miR-972 32522 Graf cgGAUUUAUAAGCAUA-ACAUGu |||| | | ||| ||||| aaCUAAUUUUGAUUAUGUGUACc 2 21 108 130 [dm3:X:15646136-15646158:-] 0.4778 124 0 -8.73 -0.5346 MIMAT0005499 dme-miR-983 32522 Graf agUAAUCAAGCUUUGCAUA-AUa | |:| |: ||||||| || aaAAUGGAUUACAACGUAUCUAa 2 21 363 385 [dm3:X:15645881-15645903:-] 0.4773 124 0 -7.20 -1.1053 MIMAT0005500 dme-miR-984 32522 Graf uuuaaggUUGG-CAUA-AAUGGAGu |||| || ||||||: accaggaAACCACAAUCUUACCUUa 2 17 180 204 [dm3:X:15646062-15646086:-] 0.4978 130 0 -13.54 -0.1335 MIMAT0005509 dme-miR-991 32522 Graf ugaAAGGUUUGAUG-UUGAAAUu ||::||| |:: ||||||| cacUUUUAAAAUGUAAACUUUAa 2 20 434 456 [dm3:X:15645810-15645832:-] 0.3620 162 7 -13.65 -0.9803 MIMAT0005026 dme-miR-1013 32522 Graf gcucAAGCCGUAUGAAAAUa ||| || ||||||| gugcUUC-GCUCACUUUUAa 2 17 424 442 [dm3:X:15645824-15645842:-] 0.3620 150 7 -9.44 -0.5241 MIMAT0011784 dme-miR-2279* 32522 Graf uuaaAGUGUGUGUCUAUAAAuu | |:| |:| |||||| auaaUAAUA-AUAAAUAUUUuc 3 19 505 525 [dm3:X:15645741-15645761:-] 0.4336 132 0 -3.59 -0.1108 MIMAT0011784 dme-miR-2279* 32522 Graf uuaaagugugugucuAUAAAUu |||||| guacuuauuuuuaauUAUUUAa 2 8 243 264 [dm3:X:15646002-15646023:-] 0.4978 120 6 -4.00 -0.2293 MIMAT0011791 dme-miR-2283 32522 Graf uaacagcAUAAGUA-CUAUAAAAg || | || ||||||| auaauaaUAAUAAUAAAUAUUUUc 2 17 502 525 [dm3:X:15645741-15645764:-] 0.4336 147 7 -5.66 -1.0787 MIMAT0011791 dme-miR-2283 32522 Graf uaacagcauaaguacuAUAAAAg |||||| gaccauacaauguacuUAUUUUu 2 8 232 254 [dm3:X:15646012-15646034:-] 0.4978 120 6 -3.47 -0.1128 MIMAT0012194 dme-miR-307-as* 32522 Graf gguaguguuggagGAACUCACu :||||||| -----------aaUUUGAGUGc 2 10 1 11 [dm3:X:15646255-15646265:-] 0.5698 141 7 -10.56 -0.5257 MIMAT0012196 dme-miR-2489 32522 Graf ugacguUUAUG----UUGUAUGUUAu ||||| | |||||||| cuuuauAAUACCAUGACCAUACAAUg 2 17 218 243 [dm3:X:15646023-15646048:-] 0.4978 151 7 -11.03 -0.6241 MIMAT0012196 dme-miR-2489 32522 Graf ugacgUUUAUGUUG-UAUGUUAu ||| |:||: |||:||| aaaaaAAAAAUAAUAAUAUAAUa 2 18 485 507 [dm3:X:15645759-15645781:-] 0.4336 144 0 -8.01 -0.1688 MIMAT0012196 dme-miR-2489 32522 Graf ugacguuuauguUGUAUGUUAu | ||||||| gcauucgucgguAGAUACAAUu 2 11 44 65 [dm3:X:15646201-15646222:-] 0.5393 142 7 -11.05 -0.7570 MIMAT0012208 dme-miR-2497* 32522 Graf uuguuGAUGUAAAACGUUACGAAUg || ||||| : |||||| acgcuCUUCAUUU---GUUGCUUAu 2 21 314 335 [dm3:X:15645931-15645952:-] 0.4978 124 6 -12.68 -0.1044 MIMAT0012209 dme-miR-2497 32522 Graf gaCGUUUGUAACAUUUACAACa | ||||:| | ||||||| aaGAAAACGUAG--AAUGUUGa 2 21 537 556 [dm3:X:15645710-15645729:-] 0.3709 157 7 -11.79 -0.3629 MIMAT0000334 dme-miR-92a 32522 Graf uauccgGCCCUGUUCACGUUac || |: |||||| aauucaCGUAAUUUGUGCAAaa 3 17 344 365 [dm3:X:15645901-15645922:-] 0.4875 124 0 -10.18 -0.1287 MIMAT0000338 dme-miR-277 32522 Graf acagcAUGGUCUAUCACGUAAAu ||| || : ||||||| ggauuUACAUGA-GCUGCAUUUu 2 19 144 165 [dm3:X:15646101-15646122:-] 0.4878 148 7 -9.29 -0.3939 MIMAT0000345 dme-miR-281 32522 Graf uguuucucucGUUAAGGUACUGu :||| ||||||| uuaaccuuuaUAAUACCAUGACc 2 14 213 235 [dm3:X:15646031-15646053:-] 0.4978 153 7 -12.71 -1.2009 MIMAT0000358 dme-miR-92b 32522 Graf cguccgGCCCUGAUCACGUUaa || |:| |||||| aauucaCGUAAUUUGUGCAAaa 3 17 344 365 [dm3:X:15645901-15645922:-] 0.4875 132 0 -10.56 -0.1287 MIMAT0000398 dme-miR-307 32522 Graf gagugaguuccucCAACACu |||||| ucugaaaauaaucGUUGUGu 2 8 85 104 [dm3:X:15646162-15646181:-] 0.4778 120 6 -8.22 -0.1826 MIMAT0000402 dme-miR-310 32522 Graf uuuccgGCCCUUCACACGUUau || | ||||||| aauucaCGUAAUUUGUGCAAaa 3 17 344 365 [dm3:X:15645901-15645922:-] 0.4875 128 0 -9.88 -0.1287 MIMAT0000403 dme-miR-311 32522 Graf aguccggccacuuACACGUUau ||||||| aauucacguaauuUGUGCAAaa 3 10 344 365 [dm3:X:15645901-15645922:-] 0.4875 125 0 -10.56 -0.1287 MIMAT0000404 dme-miR-312 32522 Graf aguccgGCAGAGUUCACGUUau ||| : |||||| aauucaCGUAAUUUGUGCAAaa 3 17 344 365 [dm3:X:15645901-15645922:-] 0.4875 124 0 -11.68 -0.1275 MIMAT0000405 dme-miR-313 32522 Graf agcccgaCACUUUUCACGUUau || | |||||| aauucacGUAAUUUGUGCAAaa 3 16 344 365 [dm3:X:15645901-15645922:-] 0.4875 123 0 -7.12 -0.1287 MIMAT0000407 dme-miR-315 32522 Graf cgaaagacucguuguUAGUUUu |||||| ucugccauauaccauAUCAAAa 2 8 464 485 [dm3:X:15645781-15645802:-] 0.3978 120 6 -8.23 -0.2255 MIMAT0005467 dme-miR-190 32522 Graf guugguucuuauaguuuGUAUAGa |||||| ugaagucugccauauacCAUAUCa 2 8 459 482 [dm3:X:15645784-15645807:-] 0.3620 120 6 -7.96 -0.2604 MIMAT0005476 dme-miR-962 32522 Graf cugUCGUAGUUAAAGAGAUGGAAUa | || ||| ||| ||||||| gaaACCA-CAA--UCU-UACCUUAu 2 23 185 205 [dm3:X:15646061-15646081:-] 0.4978 151 7 -12.27 -1.0804 MIMAT0005493 dme-miR-977 32522 Graf aaucUGUUGCA---CUUAUAGAgu ||||||| ||||||| gauuACAACGUAUCUAAUAUCUac 3 18 369 392 [dm3:X:15645874-15645897:-] 0.4773 140 0 -15.09 -0.1037 MIMAT0005497 dme-miR-981 32522 Graf acguccaaAGCAGCUGUUGCuu | | : |||||| ugcaaaaaUGGAUUACAACGua 3 15 359 380 [dm3:X:15645886-15645907:-] 0.4773 122 0 -11.08 -0.1132 MIMAT0005516 dme-miR-252 32522 Graf gaGGAC-GCCGUGAU-CAUGAAUc | || | :|| | ||||||| acCAUGACCAUACAAUGUACUUAu 2 21 227 250 [dm3:X:15646016-15646039:-] 0.4978 146 7 -12.16 -1.2262 MIMAT0005519 dme-miR-999 32522 Graf ucugugucagaauguCAAUUGu |||||| uuaccuuauaaauauGUUAACc 2 8 197 218 [dm3:X:15646048-15646069:-] 0.4978 120 6 -7.06 -0.1956

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Graf RAID00063131 dme-miR-1013-3p miRNA MIMAT0005026 Graf mRNA 32522 Prediction 0.1828 Graf RAID00097261 dme-miR-310-3p miRNA MIMAT0000402 Graf mRNA 32522 Prediction 0.1828 Graf RAID00141725 dme-miR-977-3p miRNA MIMAT0005493 Graf mRNA 32522 Prediction 0.1828 Graf RAID00173890 dme-miR-307a-3p miRNA MIMAT0000398 Graf mRNA 32522 Prediction 0.1828 Graf RAID00364529 dme-miR-315-5p miRNA MIMAT0000407 Graf mRNA 32522 Prediction 0.2202 Graf RAID00466771 dme-miR-190-5p miRNA MIMAT0005467 Graf mRNA 32522 Prediction 0.2202 Graf RAID00607964 dme-miR-92b-3p miRNA MIMAT0000358 Graf mRNA 32522 Prediction 0.1828 Graf RAID00842150 dme-miR-263a-5p miRNA MIMAT0000319 Graf mRNA 32522 Prediction 0.1828 Graf RAID01067103 dme-miR-981-3p miRNA MIMAT0005497 Graf mRNA 32522 Prediction 0.1828 Graf RAID01236230 dme-miR-252-5p miRNA MIMAT0005516 Graf mRNA 32522 Prediction 0.2202 Graf RAID01350322 dme-miR-962-5p miRNA MIMAT0005476 Graf mRNA 32522 Prediction 0.2202 Graf RAID01395955 dme-miR-991-3p miRNA MIMAT0005509 Graf mRNA 32522 Prediction 0.1828 Graf RAID01652903 dme-miR-313-3p miRNA MIMAT0000405 Graf mRNA 32522 Prediction 0.1828 Graf RAID02362993 dme-mir-iab-4 miRNA MI0000432 Graf mRNA 32522 Prediction 0.1828 Graf RAID02472725 dme-mir-281-1 miRNA MI0000366 Graf mRNA 32522 Prediction 0.1828 Graf RAID02478938 dme-miR-312-3p miRNA MIMAT0000404 Graf mRNA 32522 Prediction 0.1828 Graf RAID03202780 dme-miR-281-3p miRNA MIMAT0000345 Graf mRNA 32522 Prediction 0.1828 Graf RAID03338457 dme-miR-311-3p miRNA MIMAT0000403 Graf mRNA 32522 Prediction 0.1828 Graf RAID03695851 dme-miR-92a-3p miRNA MIMAT0000334 Graf mRNA 32522 Prediction 0.1828 Graf RAID03708159 dme-miR-277-3p miRNA MIMAT0000338 Graf mRNA 32522 Prediction 0.2202 Graf RAID03917849 dme-miR-999-3p miRNA MIMAT0005519 Graf mRNA 32522 Prediction 0.1828