DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 32532 CG8974 gccccgcucucuuaCUAUUCc |||||| aaagacaucaccccGAUAAGa 2 8 17 37 [dm3:X:15688097-15688117:-] 0.4452 120 6 -4.48 -0.1027 MIMAT0000343 dme-miR-280 32532 CG8974 auagUAAAGUAUACGUUGCAUUUAUGu || ||| | : :: ||||||: guagAUGUCAAAAAUUGUAUAAAUAUa 2 24 316 342 [dm3:X:15687792-15687818:-] 0.5177 139 0 -8.94 -0.3656 MIMAT0000343 dme-miR-280 32532 CG8974 auAGUAAAGUAUACGUUG-CAUUUAUGu | | |||: || ||| |||| || uuUAAAUUCG-AUAAAACAUUAAAAACa 2 26 346 372 [dm3:X:15687762-15687788:-] 0.5185 126 0 -5.66 -0.1830 MIMAT0000360 dme-miR-287 32532 CG8974 cacguuugcuaaaAGUUGUgu |||||| uccuccaguuaaaUCAACAau 3 9 92 112 [dm3:X:15688022-15688042:-] 0.5643 120 0 -6.38 -0.1126 MIMAT0000363 dme-miR-288 32532 CG8974 guACUUUACUUUA-GCUGUACUUu | |||| :|| |||| || uuUUAAAUUCGAUAAAACAUUAAa 2 22 345 368 [dm3:X:15687766-15687789:-] 0.5185 120 0 -4.21 -0.1282 MIMAT0000364 dme-miR-289 32532 CG8974 ucagcguccgaggugaauuUAUAAAu |||||| ucaaaaauuguauaaauauAUAUUUu 2 8 323 348 [dm3:X:15687786-15687811:-] 0.5177 120 6 -5.06 -0.2558 MIMAT0005488 dme-miR-972 32532 CG8974 cggAUUUAUA-AGCAUAACAUGu ||:||:| ||||||: augUAGAUGUCAAAAAUUGUAUa 2 20 314 336 [dm3:X:15687798-15687820:-] 0.5177 130 0 -10.89 -0.4361 MIMAT0005502 dme-miR-985 32532 CG8974 acgggcUGGUAA-CCUUGUAAAc | |||| ||||||| cgauaaAACAUUAAAAACAUUUa 2 17 354 376 [dm3:X:15687758-15687780:-] 0.5292 147 7 -7.74 -1.3465 MIMAT0005509 dme-miR-991 32532 CG8974 ugaAAGGUUUG----AUGUUGAAAUu ||::|||: || ||| ||| auaUUUUAAAUUCGAUAAAACAUUAa 2 20 342 367 [dm3:X:15687767-15687792:-] 0.5185 122 0 -5.79 -0.2493 MIMAT0010206 dme-miR-995* 32532 CG8974 gcgucgaggguguauUAAGCCc |||||| acauaaauuguuagcAUUCGGu 2 8 156 177 [dm3:X:15687957-15687978:-] 0.5643 120 6 -9.08 -0.1255 MIMAT0010206 dme-miR-995* 32532 CG8974 gcgucgaggguguaUUAAGCcc |||||| aaauauauauuuuaAAUUCGau 3 9 336 357 [dm3:X:15687777-15687798:-] 0.5185 120 0 -7.77 -0.3094 MIMAT0011784 dme-miR-2279* 32532 CG8974 uuAAAGUGUGUGUCUAUAAAuu || :|:| |:| |||||| aaUUGUAUAAAUAUAUAUUUua 3 21 328 349 [dm3:X:15687785-15687806:-] 0.5177 144 0 -5.93 -0.4423 MIMAT0011788 dme-miR-2281* 32532 CG8974 aacguaGACGUCGACGUC-UAUUa || |: || ||| |||| gauaccCUACGACUCCAGCAUAAa 2 18 246 269 [dm3:X:15687865-15687888:-] 0.5177 121 0 -9.31 -0.9373 MIMAT0011791 dme-miR-2283 32532 CG8974 uaacAGCAUAAGUA-CUAUAAAAg |:|||| || ||||||| aaaaUUGUAUAAAUAUAUAUUUUa 2 20 326 349 [dm3:X:15687785-15687808:-] 0.5177 158 7 -7.92 -1.3235 MIMAT0012195 dme-miR-307-as 32532 CG8974 cugaGUGAGUUGGACCCACACu || | : | | |||||| ugggCAAUAGUCGUUGGUGUGa 2 19 127 148 [dm3:X:15687986-15688007:-] 0.5643 122 6 -17.00 -0.1682 MIMAT0012199 dme-miR-2492 32532 CG8974 aaACUUUCGAGAGCUGUUUUGUa | :|:| | ||| ||||||| auUUGAGGAU-UCG-CAAAACAg 2 22 188 208 [dm3:X:15687926-15687946:-] 0.5643 153 7 -16.73 -0.4871 MIMAT0012199 dme-miR-2492 32532 CG8974 aaacuuucgaGAGCUGUUUUGUa :||||:|||||| auauuuuaaaUUCGAUAAAACAu 2 14 342 364 [dm3:X:15687770-15687792:-] 0.5185 145 6 -16.85 -0.2719 MIMAT0012199 dme-miR-2492 32532 CG8974 aaacuuucgagagcugUUUUGUa |||||| auucgauaaaacauuaAAAACAu 2 8 351 373 [dm3:X:15687761-15687783:-] 0.5193 120 6 -15.38 -0.1521 MIMAT0012211 dme-miR-2498 32532 CG8974 uucauucugcccuuacGGUCAAa |||||| cauauagcaguauccuCCAGUUa 2 8 80 102 [dm3:X:15688032-15688054:-] 0.5643 120 6 -7.60 -0.1418 MIMAT0000319 dme-miR-263a 32532 CG8974 cacuuaagaaggucacgGUAAUUg |||||| uuuuaaauucgauaaaaCAUUAAa 2 8 345 368 [dm3:X:15687766-15687789:-] 0.5185 120 6 -7.77 -0.6431 MIMAT0000347 dme-miR-283 32532 CG8974 ucuuaauggucgacUAUAAAu |||||| aauuguauaaauauAUAUUUu 2 8 328 348 [dm3:X:15687786-15687806:-] 0.5177 120 6 -2.31 -0.2536 MIMAT0000390 dme-miR-304 32532 CG8974 gaGUGUAAAUGUUUAACU-CUAAu :|:| ||::|| |||| |||| guUAUAAUUGUAAUUUGAGGAUUc 2 22 176 199 [dm3:X:15687935-15687958:-] 0.5643 137 0 -11.87 -0.8894 MIMAT0000407 dme-miR-315 32532 CG8974 cgaaagacUCGUUGUUAGUUuu ||: | |||||| uauccuccAGUUA-AAUCAAca 3 15 90 110 [dm3:X:15688024-15688044:-] 0.5643 124 0 -5.34 -0.2157 MIMAT0000408 dme-miR-316 32532 CG8974 gcGGUCAUUCGCCUUUUUCUGu :| | :| || | |||||| aaUCUGCGAACGCAUAAAGACa 2 21 2 23 [dm3:X:15688111-15688132:-] 0.5017 128 6 -13.04 -0.1064 MIMAT0005478 dme-miR-964 32532 CG8974 uuCAA-UUCGAGGGGAUAAGAuu ||| || | | |||||| caGUUAAAUCAACAAUAUUCUua 3 21 97 119 [dm3:X:15688015-15688037:-] 0.5643 131 0 -10.92 -0.1255 MIMAT0005501 dme-miR-927 32532 CG8974 ccAUUUCGCAUCCUUAAGAUUu |||| || |||:||| uaUAAA---UAUAUAUUUUAAa 2 21 333 351 [dm3:X:15687783-15687801:-] 0.5185 128 0 -3.46 -0.1065 MIMAT0005503 dme-miR-986 32532 CG8974 agucaguguugcgaUAAGCUcu |||||| aauauauauuuuaaAUUCGAua 3 9 337 358 [dm3:X:15687776-15687797:-] 0.5185 120 0 -5.55 -0.5184 MIMAT0005506 dme-miR-989 32532 CG8974 caagGUGAUGCAGUGUAGUGu ||: | | ||||||| aacgCAUAAAG--ACAUCACc 2 18 10 28 [dm3:X:15688106-15688124:-] 0.4452 142 7 -11.60 -0.4679

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG8974 RAID00131858 dme-miR-964-5p miRNA MIMAT0005478 CG8974 mRNA 32532 Prediction 0.1828 CG8974 RAID00771411 dme-miR-304-5p miRNA MIMAT0000390 CG8974 mRNA 32532 Prediction 0.1828 CG8974 RAID01102125 dme-miR-315-5p miRNA MIMAT0000407 CG8974 mRNA 32532 Prediction 0.1828 CG8974 RAID01333390 dme-miR-986-5p miRNA MIMAT0005503 CG8974 mRNA 32532 Prediction 0.1828 CG8974 RAID01366568 dme-miR-316-5p miRNA MIMAT0000408 CG8974 mRNA 32532 Prediction 0.2202 CG8974 RAID01599192 dme-miR-985-3p miRNA MIMAT0005502 CG8974 mRNA 32532 Prediction 0.1828 CG8974 RAID01615184 dme-miR-263a-5p miRNA MIMAT0000319 CG8974 mRNA 32532 Prediction 0.1828 CG8974 RAID02710620 dme-miR-989-3p miRNA MIMAT0005506 CG8974 mRNA 32532 Prediction 0.2202 CG8974 RAID02813596 dme-miR-283-5p miRNA MIMAT0000347 CG8974 mRNA 32532 Prediction 0.1828 CG8974 RAID03887422 dme-miR-927-5p miRNA MIMAT0005501 CG8974 mRNA 32532 Prediction 0.1828