DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 32616 CG4420 ugGUCAUGGACUACAUUAUGAGu | || || | | ||||||| agCCGUUCC-AACGAAAUACUCc 2 22 106 127 [dm3:X:16338897-16338918:+] 0.4522 151 7 -12.41 -0.2597 MIMAT0000343 dme-miR-280 32616 CG4420 auaguaaagUAUACGUUG--CAUUUAUGu | ||| ||| |||||||| ucaacgaaaACAUGAAACAAGUAAAUACa 2 19 442 470 [dm3:X:16339233-16339261:+] 0.4442 161 7 -15.43 -0.9571 MIMAT0000363 dme-miR-288 32616 CG4420 guacuUUACUUUAGCUGUACUUu || |||| ||||||| gcaucAACGAAA---ACAUGAAa 2 19 439 458 [dm3:X:16339230-16339249:+] 0.4442 150 7 -10.60 -1.0995 MIMAT0000394 dme-miR-306* 32616 CG4420 cgugUCCGUGUCUCA-CUGGGGg | | ||||| | |||||| gaugAUGAACAGACUGGACCCCa 2 19 74 96 [dm3:X:16338865-16338887:+] 0.4259 130 6 -19.98 -0.8487 MIMAT0005489 dme-miR-973 32616 CG4420 uuUUAGC-UUCAAGUUGGUG-GUUGGu ||| | ||| | | :|| ||||| gaAAUAGUAAGGACUA-UACACAACCa 2 24 178 203 [dm3:X:16338969-16338994:+] 0.4784 120 0 -15.13 -1.0744 MIMAT0005494 dme-miR-978 32616 CG4420 gacGUUAAAUGCCGUGACCUGu ::|| || | ||||||| ggaUGAUGAACAG-ACUGGACc 2 20 73 93 [dm3:X:16338864-16338884:+] 0.4259 149 7 -11.86 -0.1316 MIMAT0011787 dme-miR-2280* 32616 CG4420 agucaaucgaaccUUCAUUUAa |||||||| gaaaacaugaaacAAGUAAAUa 2 10 447 468 [dm3:X:16339238-16339259:+] 0.4442 145 7 -4.85 -1.0617 MIMAT0012199 dme-miR-2492 32616 CG4420 aaacUUUCGAG-AGCUG-UUUUGUa ||: | | || || |||||| aaacAAGCCGCAUCAACGAAAACAu 2 20 430 454 [dm3:X:16339221-16339245:+] 0.4442 122 6 -11.15 -0.4830 MIMAT0012209 dme-miR-2497 32616 CG4420 gacGUUUGUAACA-UUUACAAca | ||: | || ||||||| uuuCUAAUUUAGUGAAAUGUUua 3 20 232 254 [dm3:X:16339023-16339045:+] 0.4784 138 0 -4.63 -0.1223 MIMAT0000355 dme-miR-210 32616 CG4420 aucgGCGACAGUGUGCGUGUu ||| | :| ||||||| ---aCGCGGCUAGACGCACAg 2 18 1 18 [dm3:X:16338792-16338809:+] 0.5895 157 7 -20.70 -0.2683 MIMAT0000412 dme-miR-iab-4-5p 32616 CG4420 agUCCUAUGUAAGUCAUAUGCa | | || ||: |||||| ugAUGUCACUUUUUUUAUACGa 2 21 260 281 [dm3:X:16339051-16339072:+] 0.4784 124 6 -8.30 -0.1817 MIMAT0005474 dme-miR-960 32616 CG4420 cgauACGUUAGACCUUAUGAGu | ||| | | ||||||| ccguUCCAA-C-GAAAUACUCc 2 19 108 127 [dm3:X:16338899-16338918:+] 0.4522 146 7 -7.91 -0.2551 MIMAT0005476 dme-miR-962 32616 CG4420 cugUCGUAGUUAAAGA-GAUG-GAAUa | :||:|| | | :||| |||| cugACUAUUAAAUAAUAUUACACUUAu 2 23 491 517 [dm3:X:16339282-16339308:+] 0.4442 121 0 -9.98 -1.0320 MIMAT0005507 dme-miR-137 32616 CG4420 gaugcacauaagagUUCGUUAu ||||||| uauacacaaccacaAAGCAAUg 2 9 192 213 [dm3:X:16338983-16339004:+] 0.4784 140 7 -8.73 -0.7427

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rngo RAID00320823 dme-miR-960-5p miRNA MIMAT0005474 rngo mRNA 32616 Prediction 0.2202 rngo RAID00642915 dme-miR-311-3p miRNA MIMAT0000403 rngo mRNA 32616 Prediction 0.1828 rngo RAID00694823 dme-miR-978-3p miRNA MIMAT0005494 rngo mRNA 32616 Prediction 0.1828 rngo RAID01008054 dme-miR-92a-3p miRNA MIMAT0000334 rngo mRNA 32616 Prediction 0.1828 rngo RAID01173329 dme-miR-210-3p miRNA MIMAT0000355 rngo mRNA 32616 Prediction 0.1828 rngo RAID01475920 dme-miR-310-3p miRNA MIMAT0000402 rngo mRNA 32616 Prediction 0.1828 rngo RAID01582070 dme-miR-285-3p miRNA MIMAT0000356 rngo mRNA 32616 Prediction 0.1828 rngo RAID02001156 dme-miR-92b-3p miRNA MIMAT0000358 rngo mRNA 32616 Prediction 0.1828 rngo RAID02077475 dme-miR-998-3p miRNA MIMAT0005518 rngo mRNA 32616 Prediction 0.1828 rngo RAID02152121 dme-miR-8-3p miRNA MIMAT0000113 rngo mRNA 32616 Prediction 0.2202 rngo RAID02435180 dme-miR-981-3p miRNA MIMAT0005497 rngo mRNA 32616 Prediction 0.1828 rngo RAID02700915 dme-miR-962-5p miRNA MIMAT0005476 rngo mRNA 32616 Prediction 0.1828 rngo RAID02783601 dme-miR-137-3p miRNA MIMAT0005507 rngo mRNA 32616 Prediction 0.2202 rngo RAID02991068 dme-miR-313-3p miRNA MIMAT0000405 rngo mRNA 32616 Prediction 0.1828 rngo RAID03113612 dme-miR-12-5p miRNA MIMAT0000117 rngo mRNA 32616 Prediction 0.1828 rngo RAID03116175 dme-miR-iab-4-5p miRNA MIMAT0000412 rngo mRNA 32616 Prediction 0.1828 rngo RAID03161684 dme-miR-995-3p miRNA MIMAT0005514 rngo mRNA 32616 Prediction 0.1828 rngo RAID03711944 dme-mir-iab-4 miRNA MI0000432 rngo mRNA 32616 Prediction 0.1828 rngo RAID03874043 dme-miR-312-3p miRNA MIMAT0000404 rngo mRNA 32616 Prediction 0.1828