DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 32687 CG9086 gccccgcucucUUACUAUUcc | |||||| aauuaauauuaAUUGAUAAca 3 11 290 310 [dm3:X:16851217-16851237:-] 0.5432 122 0 -1.95 -0.5326 MIMAT0000364 dme-miR-289 32687 CG9086 ucAGCGUCCGAGGUGAAU---UUAUAAau |:| | :||: ||| |||||| ggUUG-AUUUUCUUAUUAAUUAAUAUUaa 3 25 274 301 [dm3:X:16851226-16851253:-] 0.5432 125 0 -8.00 -0.2120 MIMAT0000364 dme-miR-289 32687 CG9086 ucagcguccgaggugaauUUAUAAau |||||| uuaauauuaauugauaacAAUAUUcu 3 9 292 317 [dm3:X:16851210-16851235:-] 0.5432 120 0 -5.13 -0.1338 MIMAT0005473 dme-miR-959 32687 CG9086 aaguAUUAUGG-GGGCUACUGUu |||||:: ::||| ||| uaauUAAUAUUAAUUGAUAACAa 2 19 289 311 [dm3:X:16851216-16851238:-] 0.5432 125 0 -10.28 -0.1698 MIMAT0005488 dme-miR-972 32687 CG9086 cgGAUUUAUAAGCAUA-ACAUGu :|| |||| :|||| ||||: agUUAUAUAUAUGUAUGUGUAUa 2 21 383 405 [dm3:X:16851122-16851144:-] 0.5502 124 0 -13.39 -0.1317 MIMAT0005495 dme-miR-979 32687 CG9086 aaucggacucaagcCCUUCUu |||||| gcgcagcaacuaaaGGAAGAa 2 8 500 520 [dm3:X:16851007-16851027:-] 0.5716 120 6 -10.90 -0.2202 MIMAT0005509 dme-miR-991 32687 CG9086 ugaaagguuugauguUGAAAUu |||||| uaaaggaagaaaauuACUUUAa 2 8 510 531 [dm3:X:16850996-16851017:-] 0.5595 120 6 -5.60 -0.3138 MIMAT0005022 dme-miR-1009 32687 CG9086 gacuuuACAUUGUUAAAAACUCu | | || |||||||| uauucuUAUUAC-UUUUUUGAGc 2 18 312 333 [dm3:X:16851194-16851215:-] 0.5432 147 7 -7.52 -1.0426 MIMAT0011790 dme-miR-2282 32687 CG9086 uaagauaaaaaucgaGUGGCUa |||||| ----uccuccgcaggCACCGAg 2 8 1 18 [dm3:X:16851509-16851526:-] 0.6925 120 6 -12.22 -0.1501 MIMAT0012208 dme-miR-2497* 32687 CG9086 uuguugAUGUAAAACGUUACGAAUg ||:|| | |||||| | uauauaUAUAUAAUCAAAUGCUAAa 2 20 426 450 [dm3:X:16851077-16851101:-] 0.5502 127 0 -7.43 -0.2349 MIMAT0000108 dme-miR-3 32687 CG9086 acucugugugaaaCGGGUCACu |||||||| gauaguuugagcgGCCCAGUGc 2 10 353 374 [dm3:X:16851153-16851174:-] 0.5361 145 7 -18.33 -0.1445 MIMAT0000401 dme-miR-309 32687 CG9086 auccuguuugaaaUGGGUCACg :||||||| gauaguuugagcgGCCCAGUGc 2 10 353 374 [dm3:X:16851153-16851174:-] 0.5361 141 7 -21.61 -0.1417 MIMAT0000407 dme-miR-315 32687 CG9086 cgaaagacucguUGUUAGUUUu |:||||||| auauauauauauAUAAUCAAAu 2 11 423 444 [dm3:X:16851083-16851104:-] 0.5502 146 7 -7.60 -1.2264 MIMAT0000410 dme-miR-318 32687 CG9086 acUCUAUUUGUUUCGGGUCACu || | :| : :|||||||| auAGUUUGA-GCGGCCCAGUGc 2 21 354 374 [dm3:X:16851153-16851173:-] 0.5361 150 7 -20.37 -0.1403 MIMAT0005478 dme-miR-964 32687 CG9086 uucAAUUCGAGGGGAUAAGAuu ||:| : | |||||| uaaUUGA-UAACAAUAUUCUua 3 20 299 319 [dm3:X:16851208-16851228:-] 0.5432 121 0 -6.54 -0.3320 MIMAT0005483 dme-miR-1002 32687 CG9086 agcgGGAAACAU-AGGUGAUGAAUu :|| | | |::|||||||| uacgUCUAAGCAUUUUACUACUUAu 2 21 102 126 [dm3:X:16851401-16851425:-] 0.5246 155 7 -18.97 -0.8416 MIMAT0005484 dme-miR-968 32687 CG9086 guugggaaauuaccuAUGAUGAAu |||||||| uacgucuaagcauuuUACUACUUa 2 10 102 125 [dm3:X:16851402-16851425:-] 0.5246 145 7 -12.09 -1.1561 MIMAT0005486 dme-miR-970 32687 CG9086 uaucggcgcacACAGAAUAcu | |||||| cauugguugauUUUCUUAUua 3 11 270 290 [dm3:X:16851237-16851257:-] 0.5432 122 0 -7.64 -0.2767 MIMAT0005486 dme-miR-970 32687 CG9086 uaucggcgcacacAGAAUAcu |||||| uugauaacaauauUCUUAUua 3 9 302 322 [dm3:X:16851205-16851225:-] 0.5432 120 0 -2.32 -0.2646 MIMAT0005492 dme-miR-976 32687 CG9086 cgUAACUACUAUUGAUUAGGUu || || ||| ||||| | auAUAUAU-AUAUAUAAUCAAa 2 21 423 443 [dm3:X:16851084-16851104:-] 0.5502 122 0 -2.97 -0.1219 MIMAT0005504 dme-miR-987 32687 CG9086 guaGUUAGGUCUGAUAAAUGAAAu |||| | || ||||||| uaaCAAU--AUUCUUAUUACUUUu 2 22 306 327 [dm3:X:16851200-16851221:-] 0.5432 150 7 -9.40 -1.2232 MIMAT0005504 dme-miR-987 32687 CG9086 guAGUUAGGUCUGAUAAAUGAAAu | || ||| | ||||||| acUAAAGGAAGA-AAAUUACUUUa 2 23 508 530 [dm3:X:16850997-16851019:-] 0.5595 148 7 -9.50 -1.2672 MIMAT0005520 dme-miR-1000 32687 CG9086 ugacgacacuguccUGUUAUa |||||| aauauuaauugauaACAAUAu 2 8 294 314 [dm3:X:16851213-16851233:-] 0.5432 120 6 -7.98 -0.1616

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubr1 RAID00072068 dme-miR-309-3p miRNA MIMAT0000401 Ubr1 mRNA 32687 Prediction 0.2202 Ubr1 RAID00341757 dme-miR-976-3p miRNA MIMAT0005492 Ubr1 mRNA 32687 Prediction 0.1828 Ubr1 RAID00461978 dme-miR-954-5p miRNA MIMAT0005465 Ubr1 mRNA 32687 Prediction 0.1828 Ubr1 RAID00678429 dme-miR-991-3p miRNA MIMAT0005509 Ubr1 mRNA 32687 Prediction 0.1828 Ubr1 RAID00743028 dme-miR-1000-5p miRNA MIMAT0005520 Ubr1 mRNA 32687 Prediction 0.1828 Ubr1 RAID00860202 dme-miR-968-5p miRNA MIMAT0005484 Ubr1 mRNA 32687 Prediction 0.2202 Ubr1 RAID00953545 dme-miR-973-5p miRNA MIMAT0005489 Ubr1 mRNA 32687 Prediction 0.1828 Ubr1 RAID01858735 dme-miR-979-3p miRNA MIMAT0005495 Ubr1 mRNA 32687 Prediction 0.1828 Ubr1 RAID01979466 dme-miR-308-3p miRNA MIMAT0000399 Ubr1 mRNA 32687 Prediction 0.1828 Ubr1 RAID02006045 dme-miR-3-3p miRNA MIMAT0000108 Ubr1 mRNA 32687 Prediction 0.2202 Ubr1 RAID02435120 dme-miR-1002-5p miRNA MIMAT0005483 Ubr1 mRNA 32687 Prediction 0.2202 Ubr1 RAID02515732 dme-miR-1009-3p miRNA MIMAT0005022 Ubr1 mRNA 32687 Prediction 0.1828 Ubr1 RAID02767896 dme-miR-987-5p miRNA MIMAT0005504 Ubr1 mRNA 32687 Prediction 0.2202 Ubr1 RAID03032924 dme-miR-964-5p miRNA MIMAT0005478 Ubr1 mRNA 32687 Prediction 0.1828 Ubr1 RAID03078347 dme-miR-970-3p miRNA MIMAT0005486 Ubr1 mRNA 32687 Prediction 0.1828 Ubr1 RAID03151199 dme-miR-318-3p miRNA MIMAT0000410 Ubr1 mRNA 32687 Prediction 0.2202 Ubr1 RAID03779203 dme-miR-315-5p miRNA MIMAT0000407 Ubr1 mRNA 32687 Prediction 0.2202