DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 32873 CG7058 auaGUAAAGUAUACGU----UGCAUUUAUGu ||||| : : || |:|||||||| aacCAUUUGGCGGACACUUUAUGUAAAUACa 2 25 489 519 [dm3:X:18705463-18705493:+] 0.5348 155 7 -15.72 -0.8734 MIMAT0000343 dme-miR-280 32873 CG7058 auaGUAAA-GUAUACGUUGCAUUUA-UGu ::||| || ||| :|||||| || accUGUUUCCACAUG---UGUAAAUCACu 2 25 387 412 [dm3:X:18705361-18705386:+] 0.5447 123 0 -9.32 -0.8034 MIMAT0000344 dme-miR-281-1* 32873 CG7058 ugacagcugccugucGAGAGAa |||||| aaaacuuuucgaaaaCUCUCUu 2 8 537 558 [dm3:X:18705511-18705532:+] 0.5311 120 6 -14.76 -0.1075 MIMAT0000388 dme-miR-303 32873 CG7058 uggucaaaGGACACU-UUGGAUUu | | | | ||||||| uuuuaaaaCAUAUCACAACCUAAc 2 16 988 1011 [dm3:X:18705962-18705985:+] 0.5574 142 7 -8.94 -0.7085 MIMAT0005488 dme-miR-972 32873 CG7058 cggAUUUAUAAGCAUAACAUGu ||||| | |||||||| gugUAAAUUAUAUUAUUGUACu 2 20 942 963 [dm3:X:18705916-18705937:+] 0.5574 163 7 -10.97 -1.2347 MIMAT0005502 dme-miR-985 32873 CG7058 acgggcugguaaccuUGUAAAc |||||| uuguacuaauucaauACAUUUc 2 8 957 978 [dm3:X:18705931-18705952:+] 0.5574 120 6 -5.50 -0.1472 MIMAT0005022 dme-miR-1009 32873 CG7058 gaCUUUACAUUG-UUA---AAAACUcu | || |||| |:| |||||| uuGUAAACUAACUAGUGUAUUUUGAca 3 22 755 781 [dm3:X:18705729-18705755:+] 0.5147 131 0 -6.29 -0.1242 MIMAT0005025 dme-miR-1012 32873 CG7058 gaUACCCCUUU----UAGAAAC-UGAUu ||| | ||| ||: ||| |||| uuAUGUGUAAAUUAUAUUAUUGUACUAa 2 22 938 965 [dm3:X:18705912-18705939:+] 0.5574 120 0 -7.11 -1.2872 MIMAT0011784 dme-miR-2279* 32873 CG7058 uuAAAGUGUGUGUCU-AUAAAUu ||| | || :||| |||||| aaUUUAAAAC-UAGACUAUUUAc 2 21 797 818 [dm3:X:18705771-18705792:+] 0.5147 130 6 -7.46 -0.6243 MIMAT0011787 dme-miR-2280* 32873 CG7058 agucaaucgaaccuuCAUUUAa |||||| guacaaauauuauguGUAAAUu 2 8 929 950 [dm3:X:18705903-18705924:+] 0.5574 120 6 -3.98 -0.1420 MIMAT0011789 dme-miR-2281 32873 CG7058 cguuAUGACGUCUAUGUCUAu ||:| |||||||||| uuuuUAUU--AGAUACAGAUu 2 18 1014 1032 [dm3:X:18705988-18706006:+] 0.5334 158 7 -15.03 -1.1101 MIMAT0011790 dme-miR-2282 32873 CG7058 uaagAUAAAAAUCGAGUGGCUa |:|||| :|:||||||| ccaaUGUUUUCGGUUCACCGAa 2 19 716 737 [dm3:X:18705690-18705711:+] 0.5473 170 7 -21.31 -0.6568 MIMAT0012196 dme-miR-2489 32873 CG7058 ugacgUUUAUGUUGUAU-GUUAu ||||:|| ||| |||| ugacaAAAUGCAUGAUACCAAUg 2 18 699 721 [dm3:X:18705673-18705695:+] 0.5473 129 0 -10.90 -0.7865 MIMAT0012201 dme-miR-2493 32873 CG7058 ugcggagCGUGUUUA--UGUGUGCc ||:| | | ||||||| cgacaaaGCGCCAUUGAACACACGa 2 17 4 28 [dm3:X:18704978-18705002:+] 0.6911 147 7 -19.62 -0.7911 MIMAT0012210 dme-miR-2498* 32873 CG7058 guuUUUAUUCGUAUU--GUC-GGAAAu :::||:|:| || :|| ||||| gacGGGUAGGUAGAAUCUAGUCCUUUg 2 22 626 652 [dm3:X:18705600-18705626:+] 0.5496 124 0 -14.78 -0.6665 MIMAT0000106 dme-miR-2a 32873 CG7058 cgagUA-GUUUCGACCGACACUAu || | || || :|||||| acgaAUGCCAA-CUUCUUGUGAUa 2 20 25 47 [dm3:X:18704999-18705021:+] 0.6323 132 6 -11.99 -0.1135 MIMAT0000107 dme-miR-2b 32873 CG7058 cgaggaGUUUCGACCGACACUAu | || || :|||||| cgaaugCCAA-CUUCUUGUGAUa 2 18 26 47 [dm3:X:18705000-18705021:+] 0.6323 131 6 -11.76 -0.1135 MIMAT0000109 dme-miR-4 32873 CG7058 aguuaccaaCAGAUC-GAAAUa ||:||| ||||| augccaugaGUUUAGACUUUAc 2 13 132 153 [dm3:X:18705106-18705127:+] 0.5132 120 0 -9.84 -0.4674 MIMAT0000111 dme-miR-6 32873 CG7058 uuUUUCUUGUCG-GUGACACUAu :|| : || | : :|||||| acGAAUGCCAACUUCUUGUGAUa 2 21 25 47 [dm3:X:18704999-18705021:+] 0.6323 131 6 -16.37 -0.1124 MIMAT0000115 dme-miR-10-5p 32873 CG7058 uuGUUUAAGCCU-AGAUGUCCCa ::|:||: || |:||||||| caUGAGUUUAGACUUUACAGGGc 2 21 136 158 [dm3:X:18705110-18705132:+] 0.5132 163 7 -17.98 -0.4644 MIMAT0012531 dme-miR-10-3p 32873 CG7058 uuuggAGAGAUCUU---GGCUUAAAc || ||| || :||||||| guaaaUCACUAAAAUAGUCGAAUUUg 2 19 403 428 [dm3:X:18705377-18705402:+] 0.5358 153 7 -17.59 -0.5847 MIMAT0000116 dme-miR-11 32873 CG7058 cguucUUGAGUCUGACACUAc ||||: :|||||| augccAACUU--CUUGUGAUa 2 17 29 47 [dm3:X:18705003-18705021:+] 0.6323 129 6 -9.14 -0.1101 MIMAT0000118 dme-miR-13a 32873 CG7058 ugagUA-GUUUUACCGACACUAu || | || | :|||||| acgaAUGCCAACUUCUUGUGAUa 2 19 25 47 [dm3:X:18704999-18705021:+] 0.6323 133 6 -9.56 -0.1124 MIMAT0000119 dme-miR-13b 32873 CG7058 ugagcaGUUUUACCGACACUAu | || | :|||||| cgaaugCCAACUUCUUGUGAUa 2 17 26 47 [dm3:X:18705000-18705021:+] 0.6323 132 6 -11.07 -0.1124 MIMAT0000332 dme-miR-274 32873 CG7058 uaaUGGGCAAUCACAGCCA-GUGUUUu || | ||| ||| | |||||| cggACACUUUA-UGUAAAUACACAAAu 2 24 499 524 [dm3:X:18705473-18705498:+] 0.5348 125 6 -10.96 -0.7654 MIMAT0000332 dme-miR-274 32873 CG7058 uaaugggcaaucacagccAGUGUUuu |||||| uugucuuuuuaaaacauaUCACAAcc 3 9 982 1007 [dm3:X:18705956-18705981:+] 0.5574 120 0 -8.18 -0.1542 MIMAT0000341 dme-miR-279 32873 CG7058 aaUUACUCA--CA-CCUAGAUCAGu :| |:|| || | |||||||| auGACGGGUAGGUAGAAUCUAGUCc 2 21 624 648 [dm3:X:18705598-18705622:+] 0.5496 154 7 -14.46 -0.6286 MIMAT0000349 dme-miR-281-2* 32873 CG7058 ugacagcugccuaucGAGAGAa |||||| aaaacuuuucgaaaaCUCUCUu 2 8 537 558 [dm3:X:18705511-18705532:+] 0.5311 120 6 -14.33 -0.1075 MIMAT0000359 dme-miR-286 32873 CG7058 ucgUGCUCA-CAAGC-CAGAUCAGu |||:|| | | | ||||||| augACGGGUAGGUAGAAUCUAGUCc 2 21 624 648 [dm3:X:18705598-18705622:+] 0.5496 154 7 -17.49 -0.6286 MIMAT0000391 dme-miR-305 32873 CG7058 gucucguggacuacuuCAUGUUa |||||| aauuaacagaauauauGUACAAa 2 8 913 935 [dm3:X:18705887-18705909:+] 0.5248 120 6 -10.09 -0.3242 MIMAT0000399 dme-miR-308 32873 CG7058 gaGUGU-CAUA---UU--AGGACACUAa |||| | || || ||:|||||| aaCACACGAAUGCCAACUUCUUGUGAUa 2 21 20 47 [dm3:X:18704994-18705021:+] 0.6323 137 6 -15.33 -0.1158 MIMAT0000406 dme-miR-314 32873 CG7058 ggcuUGAAUAACCGAGCUUAu |:|| || ||||||| uuacAUUUUUUCUCUCGAAUa 2 18 348 368 [dm3:X:18705322-18705342:+] 0.5536 157 7 -11.65 -1.2073 MIMAT0000411 dme-miR-2c 32873 CG7058 cgggUA-GUUUCGACCGACACUAu || | || || :|||||| acgaAUGCCAA-CUUCUUGUGAUa 2 20 25 47 [dm3:X:18704999-18705021:+] 0.6323 132 6 -12.03 -0.1135 MIMAT0005467 dme-miR-190 32873 CG7058 guugguucuuAUAGUUUGUAUAGa | | ||||||||| uuguugucuuUUUAAAACAUAUCa 2 15 979 1002 [dm3:X:18705953-18705976:+] 0.5574 154 7 -8.71 -1.2805 MIMAT0005467 dme-miR-190 32873 CG7058 guUGGUUCU-UAUAGUU-UGUAUAGa |:: || |||| :| ||||||: guAUUUUGACAUAUAGACACAUAUUa 2 23 771 796 [dm3:X:18705745-18705770:+] 0.5147 140 0 -6.56 -0.1185 MIMAT0005469 dme-miR-956 32873 CG7058 uuaccuaaucucaccAGAGCUUu ||||||| aauuuacauuuuuucUCUCGAAu 2 9 345 367 [dm3:X:18705319-18705341:+] 0.5536 140 7 -8.55 -0.9333 MIMAT0005511 dme-miR-929 32873 CG7058 guuAGACUGAGGC-AAUCC-CUc |: | ||||| ||||| || ccuUUCGUCUCCGAUUAGGUGAa 2 19 202 224 [dm3:X:18705176-18705198:+] 0.5536 125 0 -18.08 -0.6243 MIMAT0005515 dme-miR-996 32873 CG7058 ucUGCUCGU--ACUUUAGAUCAGu |||:|:| | :||||||||| ugACGGGUAGGUAGAAUCUAGUCc 2 21 625 648 [dm3:X:18705599-18705622:+] 0.5496 167 7 -24.47 -0.6286 MIMAT0005019 dme-miR-1006 32873 CG7058 gaUACUUAUUCU-UUAGCUUAAAu || | ||| | |:|||||||| aaAUCACUAAAAUAGUCGAAUUUg 2 22 405 428 [dm3:X:18705379-18705402:+] 0.5358 168 7 -12.61 -0.5774 MIMAT0005023 dme-miR-1010 32873 CG7058 gacguuuaccuuGCU-AUCCACUUu ||| |||||||| accuuucgucucCGAUUAGGUGAAa 2 13 201 225 [dm3:X:18705175-18705199:+] 0.5536 151 7 -16.09 -0.7440 MIMAT0005023 dme-miR-1010 32873 CG7058 gacGUUUACCUUGCUAUCCA-CUUu | :|| || |:||||| ||| auuCCGAU-GACGGGUAGGUAGAAu 2 22 618 641 [dm3:X:18705592-18705615:+] 0.5496 123 0 -13.93 -0.4317

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG7058 RAID00043241 dme-miR-6-3p miRNA MIMAT0000111 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID00256953 dme-miR-314-3p miRNA MIMAT0000406 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID00445214 dme-miR-972-3p miRNA MIMAT0005488 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID00645061 dme-miR-286-3p miRNA MIMAT0000359 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID00747894 dme-miR-100-5p miRNA MIMAT0000357 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID00749173 dme-miR-2c-3p miRNA MIMAT0000411 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID00989457 dme-miR-10-5p miRNA MIMAT0000115 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID01287184 dme-miR-956-3p miRNA MIMAT0005469 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID01389161 dme-miR-263b-5p miRNA MIMAT0000362 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID01466820 dme-miR-303-5p miRNA MIMAT0000388 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID01494235 dme-miR-2a-3p miRNA MIMAT0000106 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID01588989 dme-miR-1010-3p miRNA MIMAT0005023 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID01620973 dme-miR-308-3p miRNA MIMAT0000399 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID01800569 dme-miR-2b-3p miRNA MIMAT0000107 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID01828615 dme-miR-11-3p miRNA MIMAT0000116 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID01907180 dme-mir-2a-1 miRNA MI0000117 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID01973914 dme-miR-990-5p miRNA MIMAT0005508 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID02048754 dme-miR-279-3p miRNA MIMAT0000341 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID02150046 dme-miR-996-3p miRNA MIMAT0005515 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID02821120 dme-miR-1006-3p miRNA MIMAT0005019 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID02838877 dme-miR-274-5p miRNA MIMAT0000332 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID03033069 dme-miR-929-3p miRNA MIMAT0005511 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID03257509 dme-miR-1016-3p miRNA MIMAT0005029 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID03422680 dme-miR-13a-3p miRNA MIMAT0000118 CG7058 mRNA 32873 Prediction 0.2381 CG7058 RAID03657913 dme-miR-13b-3p miRNA MIMAT0000119 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID03732134 dme-miR-190-5p miRNA MIMAT0005467 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID03736730 dme-miR-281-2-5p miRNA MIMAT0000349 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID03999022 dme-miR-10-3p miRNA MIMAT0012531 CG7058 mRNA 32873 Prediction 0.1828 CG7058 RAID04044426 dme-miR-305-5p miRNA MIMAT0000391 CG7058 mRNA 32873 Prediction 0.2202 CG7058 RAID04057374 dme-miR-4-3p miRNA MIMAT0000109 CG7058 mRNA 32873 Prediction 0.1828