DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005018 dme-miR-1005 32977 Ubqn gacgcUUAAUUUCUAAGGUCu |: |: : ||||||| ccaacAGAUGCGAAUUCCAGu 2 17 646 666 [dm3:X:19580745-19580765:+] 0.5225 144 7 -15.29 -0.6073 MIMAT0012196 dme-miR-2489 32977 Ubqn ugACGUUUAUGU-UGUAUGU-UAu | :| |||:: |:||||| || uaUAUAUAUAUGUAUAUACAUAUa 2 21 1096 1119 [dm3:X:19581195-19581218:+] 0.5448 123 0 -8.51 -1.1255 MIMAT0012216 dme-miR-2501 32977 Ubqn aaUCGG-GUCCGUG-AGGUUUGA-AUg |||| :|| ||: ||||||| || uaAGCCAUAGCCAUAACCAAACUGUAc 2 23 7 33 [dm3:X:19580106-19580132:+] 0.6072 132 0 -21.38 -0.6767 MIMAT0000114 dme-miR-9a 32977 Ubqn agUAUGUCGAUC-UAUUGGUUUCu ||| :| | | || ||||||| agAUAGGGAUCGCAU-ACCAAAGu 2 22 354 376 [dm3:X:19580453-19580475:+] 0.5245 154 7 -12.69 -0.3499 MIMAT0000361 dme-miR-87 32977 Ubqn gugUGGAC-UUUAAAACGAGUu |: || | | |||||||| ugaAUAUGCAUACUUUGCUCAc 2 19 484 505 [dm3:X:19580583-19580604:+] 0.4994 153 7 -13.09 -0.3467 MIMAT0000392 dme-miR-9c 32977 Ubqn agAUGUCGAUCUUAUGGUUUCu || :| | | ||||||||| gaUAGGGAUCGCAUACCAAAGu 2 21 355 376 [dm3:X:19580454-19580475:+] 0.5245 164 7 -13.83 -0.3723 MIMAT0000395 dme-miR-9b 32977 Ubqn guAUGUCGAUUUUAGUGGUUUCu || :| | : || ||||||| gaUAGGGAUCGCAU-ACCAAAGu 2 22 355 376 [dm3:X:19580454-19580475:+] 0.5245 151 7 -13.26 -0.3527 MIMAT0000407 dme-miR-315 32977 Ubqn cgaAAGAC-UCGUUGUUAGUUUu | ||| ||: |||||||| guaUGCUGUAGU--CAAUCAAAa 2 20 929 949 [dm3:X:19581028-19581048:+] 0.5392 151 7 -14.51 -0.7308 MIMAT0000407 dme-miR-315 32977 Ubqn cgaaagacucguuguUAGUUUu |||||| cauauauauauauauAUCAAAa 2 8 1114 1135 [dm3:X:19581213-19581234:+] 0.5448 120 6 -5.67 -0.2741 MIMAT0000408 dme-miR-316 32977 Ubqn gcGGUCAUUCGCCU-UUUUCUGu ||| : |: | ||||||| uuCCAAGGUGUUAACAAAAGACg 2 21 1138 1160 [dm3:X:19581237-19581259:+] 0.5448 143 7 -14.87 -0.8264 MIMAT0000409 dme-miR-317 32977 Ubqn ugaCCUAUGGUGGUCGACACAAGu | ||| :|:| |||||||| guaGUAUA-UAUC--CUGUGUUCu 2 22 708 728 [dm3:X:19580807-19580827:+] 0.5225 152 7 -16.91 -0.1247

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubqn RAID00297560 dme-miR-9c-5p miRNA MIMAT0000392 Ubqn mRNA 32977 Prediction 0.1828 Ubqn RAID00531717 dme-miR-995-3p miRNA MIMAT0005514 Ubqn mRNA 32977 Prediction 0.1828 Ubqn RAID00976910 dme-miR-975-5p miRNA MIMAT0005491 Ubqn mRNA 32977 Prediction 0.1828 Ubqn RAID01052915 dme-miR-9a-5p miRNA MIMAT0000114 Ubqn mRNA 32977 Prediction 0.1828 Ubqn RAID01056038 dme-miR-317-3p miRNA MIMAT0000409 Ubqn mRNA 32977 Prediction 0.2202 Ubqn RAID01076502 dme-mir-iab-4 miRNA MI0000432 Ubqn mRNA 32977 Prediction 0.1828 Ubqn RAID01830937 dme-miR-1002-5p miRNA MIMAT0005483 Ubqn mRNA 32977 Prediction 0.1828 Ubqn RAID02295383 dme-miR-316-5p miRNA MIMAT0000408 Ubqn mRNA 32977 Prediction 0.2202 Ubqn RAID02660902 dme-miR-999-3p miRNA MIMAT0005519 Ubqn mRNA 32977 Prediction 0.1828 Ubqn RAID02964902 dme-miR-87-3p miRNA MIMAT0000361 Ubqn mRNA 32977 Prediction 0.2202 Ubqn RAID02969883 dme-miR-1005-3p miRNA MIMAT0005018 Ubqn mRNA 32977 Prediction 0.1828 Ubqn RAID02978902 dme-miR-9b-5p miRNA MIMAT0000395 Ubqn mRNA 32977 Prediction 0.1828 Ubqn RAID03007579 dme-miR-285-3p miRNA MIMAT0000356 Ubqn mRNA 32977 Prediction 0.1828 Ubqn RAID03174598 dme-miR-315-5p miRNA MIMAT0000407 Ubqn mRNA 32977 Prediction 0.2202 Ubqn RAID03505468 dme-miR-998-3p miRNA MIMAT0005518 Ubqn mRNA 32977 Prediction 0.1828 Ubqn RAID04015268 dme-miR-252-5p miRNA MIMAT0005516 Ubqn mRNA 32977 Prediction 0.1828