DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 33035 HERC2 auaGUA-AAGUAUACGUUGCAUUUAUGu :|| | ||||| ||: ||||||: uuaUAUAUACAUAU-AAAUUUAAAUAUa 2 25 404 430 [dm3:X:20282985-20283011:+] 0.5231 149 0 -10.19 -0.2787 MIMAT0000343 dme-miR-280 33035 HERC2 auaguaaaGUAUACGUUGCAUUUAUgu :| | | || |||||| aucugaacUAAACGGAAGCUAAAUAaa 3 20 653 679 [dm3:X:20283234-20283260:+] 0.5296 131 0 -6.88 -0.1048 MIMAT0005481 dme-miR-966 33035 HERC2 ggUGUGUCGGGUG------UUGGGUGu ||:|||||: | ||||||| acACGCAGCCUUCAAGUUAAACCCACu 2 20 145 171 [dm3:X:20282726-20282752:+] 0.5424 150 7 -29.26 -0.6993 MIMAT0005481 dme-miR-966 33035 HERC2 ggugugucgGGUGUUGGGUGu ||: ||||||| --------aCCG-AACCCACu 2 13 1 12 [dm3:X:20282582-20282593:+] 0.6213 142 7 -15.51 -0.7711 MIMAT0005494 dme-miR-978 33035 HERC2 gaCGUUAAAUGCC--------GUGA-CCUGu |||:||||||| |||| |||| caGCAGUUUACGGUCCACACCCACUAGGACa 2 21 115 145 [dm3:X:20282696-20282726:+] 0.5234 123 0 -29.23 -0.3497 MIMAT0005509 dme-miR-991 33035 HERC2 ugAAAGGUUUG-AUGUUGAAAUu | | :| || ||:|| |||| auUAUAUAUACAUAUAAAUUUAa 2 21 403 425 [dm3:X:20282984-20283006:+] 0.5231 127 0 -4.84 -0.1464 MIMAT0005509 dme-miR-991 33035 HERC2 ugaaaGGUUUGAUGU-UGAAAUu |:|||: | | |||||| ggaagCUAAAUAAAAUACUUUAu 2 18 666 688 [dm3:X:20283247-20283269:+] 0.5296 125 6 -7.95 -1.2314 MIMAT0011784 dme-miR-2279* 33035 HERC2 uuaaaGUGUGUGUCUAUAAAuu :|:| ||| |||||| acacgUAUAAACAUAUAUUUua 3 18 194 215 [dm3:X:20282775-20282796:+] 0.5231 141 0 -9.57 -0.1657 MIMAT0011784 dme-miR-2279* 33035 HERC2 uuaAAGUGUGUGUCUAUAAAUu | :|:|||:| | ||||| uuaUAUAUACAUAUAAAUUUAa 2 20 404 425 [dm3:X:20282985-20283006:+] 0.5231 135 0 -9.98 -0.1070 MIMAT0011784 dme-miR-2279* 33035 HERC2 uuaaagugugugucuAUAAAUu |||||| uuuauaaugaugaucUAUUUAa 2 8 605 626 [dm3:X:20283186-20283207:+] 0.5296 120 6 -5.06 -0.1746 MIMAT0011789 dme-miR-2281 33035 HERC2 cguUAUGACGUCUAUGUCUAu |||:| :| ||||| || auuAUAUUAUAUAUACAUAUa 2 19 398 418 [dm3:X:20282979-20282999:+] 0.5231 134 0 -7.68 -0.1083 MIMAT0011791 dme-miR-2283 33035 HERC2 uaacaGCAUA--AGUACUAUAAAAg ||||| ||| ||||||| auacaCGUAUAAACAU-AUAUUUUa 2 19 192 215 [dm3:X:20282773-20282796:+] 0.5231 155 7 -11.33 -1.2227 MIMAT0012199 dme-miR-2492 33035 HERC2 aaacUUUCGAGAGCUGUUUUGUa :|| | | | ||||||| guccGAACCCCGC-CCAAAACAg 2 20 526 547 [dm3:X:20283107-20283128:+] 0.5296 145 7 -8.31 -0.2448 MIMAT0012201 dme-miR-2493 33035 HERC2 ugcgGAGCGUGUUUAUGUGUGCc | | ||| |: ||||||| uccaCACCCACUAGGACACACGc 2 20 128 150 [dm3:X:20282709-20282731:+] 0.5254 159 7 -16.80 -0.1164 MIMAT0012202 dme-miR-2494* 33035 HERC2 aaggguuagaccaCGUGAAUg ||||||: auauuuuaaauuaGCACUUGa 2 9 208 228 [dm3:X:20282789-20282809:+] 0.5231 124 0 -11.23 -0.1030 MIMAT0012206 dme-miR-2496* 33035 HERC2 augcuaccgGAGAGUGUGUGCGUg || ||||||||| ccacacccaCUAGGACACACGCAg 2 16 129 152 [dm3:X:20282710-20282733:+] 0.5254 151 7 -19.11 -0.1214 MIMAT0012209 dme-miR-2497 33035 HERC2 gacGUUUGUAACAUUUACAAca :|||:| |||||||| auuUAAAUA---UAAAUGUUag 3 20 420 438 [dm3:X:20283001-20283019:+] 0.5231 135 0 -7.60 -0.1403 MIMAT0012216 dme-miR-2501 33035 HERC2 aaucggguccGUG-AGGUUUGAAUg :|| | :|||:||| auauuauauaUACAUAUAAAUUUAa 2 15 401 425 [dm3:X:20282982-20283006:+] 0.5231 129 0 -7.51 -0.1326 MIMAT0000114 dme-miR-9a 33035 HERC2 agUAUGUCGAUCUAUUG-GUUUCu ||| | | || ||| ||||| ugAUA-ACCCCGAGAACACAAAGg 2 22 571 593 [dm3:X:20283152-20283174:+] 0.5296 123 0 -10.00 -0.3539 MIMAT0005467 dme-miR-190 33035 HERC2 guugguucuUAUAGUUUGUAUAga :||| |||||||| uauauacacGUAU-AAACAUAUau 3 16 189 211 [dm3:X:20282770-20282792:+] 0.5231 137 0 -7.76 -0.1136 MIMAT0005467 dme-miR-190 33035 HERC2 guUGGU-UCUUAUAGUUUGUAUAga |::| | |||| | |||||| auAUUAUAUUAUAU-AUACAUAUaa 3 23 396 419 [dm3:X:20282977-20283000:+] 0.5231 135 0 -7.28 -0.4348 MIMAT0005472 dme-miR-375 33035 HERC2 auUGAAUUCGGU--UUGCUUGUUu ||||| || | ||||||| cgACUUACCGCAUUACCGAACAAa 2 21 46 69 [dm3:X:20282627-20282650:+] 0.4829 155 7 -15.42 -0.7199 MIMAT0005472 dme-miR-375 33035 HERC2 auuGAAUUCGGUUUGCUUGUUu | |: | |||:|||||| cauCCUGCCCGAAAUGAACAAu 2 20 16 37 [dm3:X:20282597-20282618:+] 0.4997 143 6 -13.14 -0.1756 MIMAT0005504 dme-miR-987 33035 HERC2 guagUUAGGUCUGAUAAAUGAAAu || |:| |: | |||||| acggAAGCUAAAUAAAAUACUUUa 2 21 664 687 [dm3:X:20283245-20283268:+] 0.5296 128 6 -8.00 -0.4530 MIMAT0005027 dme-miR-1014 33035 HERC2 gacGUUUACUUUUACUUAAAa :| || | || ||||| uuaUAUAUACAUAUAAAUUUa 2 19 404 424 [dm3:X:20282985-20283005:+] 0.5231 122 0 -0.90 -0.1095

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score HERC2 RAID00744884 dme-miR-9a-5p miRNA MIMAT0000114 HERC2 mRNA 33035 Prediction 0.1828 HERC2 RAID01296944 dme-miR-1014-3p miRNA MIMAT0005027 HERC2 mRNA 33035 Prediction 0.1828 HERC2 RAID01628774 dme-miR-958-3p miRNA MIMAT0005471 HERC2 mRNA 33035 Prediction 0.1828 HERC2 RAID02792693 dme-miR-987-5p miRNA MIMAT0005504 HERC2 mRNA 33035 Prediction 0.2202 HERC2 RAID03061880 dme-miR-966-5p miRNA MIMAT0005481 HERC2 mRNA 33035 Prediction 0.1828 HERC2 RAID03189388 dme-miR-375-3p miRNA MIMAT0005472 HERC2 mRNA 33035 Prediction 0.2202 HERC2 RAID03612189 dme-miR-283-5p miRNA MIMAT0000347 HERC2 mRNA 33035 Prediction 0.1828 HERC2 RAID03926376 dme-miR-190-5p miRNA MIMAT0005467 HERC2 mRNA 33035 Prediction 0.1828 HERC2 RAID03984010 dme-miR-976-3p miRNA MIMAT0005492 HERC2 mRNA 33035 Prediction 0.1828