DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000336 dme-miR-276* 33377 CG4238 gcAUCC-U-UGA-GAUAUGGAG-CGAc |||| | |:| :||| |||| ||| gcUAGGUAUAUUAUUAUCCCUCGGCUg 2 22 166 192 [dm3:2L:2030104-2030130:+] 0.4929 126 0 -21.29 -0.4552 MIMAT0000388 dme-miR-303 33377 CG4238 uggucaaaggacACUUUGGAUUu || ||||||| auaauagacuaaUGCAACCUAAg 2 12 312 334 [dm3:2L:2030250-2030272:+] 0.7721 147 7 -11.73 -0.8214 MIMAT0005026 dme-miR-1013 33377 CG4238 gcuCAA-GCCGUAUGAAAAUa ||| :|| | |||||| agcGUUAUGGGAAUCUUUUAa 2 18 333 353 [dm3:2L:2030271-2030291:+] 0.6426 124 6 -9.88 -0.1142 MIMAT0012199 dme-miR-2492 33377 CG4238 aaacuuucgAGAGCUGUUUUGUa | |:| ||||||| uaaucguuaUAUUGUCAAAACAu 2 15 500 522 [dm3:2L:2030438-2030460:+] 0.5130 150 7 -11.22 -1.0147 MIMAT0000106 dme-miR-2a 33377 CG4238 cgAGUAGUUUCGACCGACACUAu |||||||| | |||||| caUCAUCAAA-AGGAAUGUGAUa 2 22 285 306 [dm3:2L:2030223-2030244:+] 0.7721 135 6 -19.14 -0.3140 MIMAT0000106 dme-miR-2a 33377 CG4238 cgAGUAGUUUCGACCGA-CACUAu || :||: ||| || ||||| agUCCGUAAGCCUGCCUAGUGAUa 2 22 119 142 [dm3:2L:2030057-2030080:+] 0.4929 129 0 -16.16 -0.5996 MIMAT0000106 dme-miR-2a 33377 CG4238 cgAGUAGUUUCGA-CCGAC-ACUAu |:||:| || ||||| |||| uaUUAUUAUCCCUCGGCUGAUGAUc 2 22 174 198 [dm3:2L:2030112-2030136:+] 0.4929 128 0 -15.95 -0.1769 MIMAT0000107 dme-miR-2b 33377 CG4238 cgAGGAGUUUCGACCGA-CACUAu ||| :||: ||| || ||||| agUCCGUAAGCCUGCCUAGUGAUa 2 22 119 142 [dm3:2L:2030057-2030080:+] 0.4929 137 0 -19.22 -0.5996 MIMAT0000107 dme-miR-2b 33377 CG4238 cgAGGAGUUUCGACCGACACUAu || ||||| | |||||| caUCAUCAAA-AGGAAUGUGAUa 2 22 285 306 [dm3:2L:2030223-2030244:+] 0.7721 127 6 -14.23 -0.3140 MIMAT0000107 dme-miR-2b 33377 CG4238 cgAGGAGUUUCGA-CCGAC-ACUAu |: |:| || ||||| |||| uaUUAUUAUCCCUCGGCUGAUGAUc 2 22 174 198 [dm3:2L:2030112-2030136:+] 0.4929 120 0 -15.46 -0.1769 MIMAT0000110 dme-miR-5 33377 CG4238 guAUAGUGUUGCUAGCAAGGAAa || |:| || :| ||||||| gcUA-CGCUACUGU-GUUCCUUu 2 22 59 79 [dm3:2L:2029997-2030017:+] 0.4929 153 7 -17.09 -0.4172 MIMAT0000111 dme-miR-6 33377 CG4238 uuuuucuugucggugACACUAu |||||| caucaucaaaaggaaUGUGAUa 2 8 285 306 [dm3:2L:2030223-2030244:+] 0.7721 120 6 -12.02 -0.3167 MIMAT0012531 dme-miR-10-3p 33377 CG4238 uuuggagaGAUCUUGGCUUAAAc :|| |||||||| | gaugcaaaUUAAAACCGAAUAUa 2 16 259 281 [dm3:2L:2030197-2030219:+] 0.7721 131 0 -10.77 -0.2570 MIMAT0000116 dme-miR-11 33377 CG4238 cguucuugagucugACACUAc |||||| aucaucaaaaggaaUGUGAUa 2 8 286 306 [dm3:2L:2030224-2030244:+] 0.7721 120 6 -9.30 -0.3247 MIMAT0000118 dme-miR-13a 33377 CG4238 ugAGUAGUUUUACCGACACUAu ||||||||| | |||||| caUCAUCAAAAGGAAUGUGAUa 2 21 285 306 [dm3:2L:2030223-2030244:+] 0.7721 152 6 -22.17 -0.3088 MIMAT0000119 dme-miR-13b 33377 CG4238 ugAGCAGUUUUACCGACACUAu || |||||| | |||||| caUCAUCAAAAGGAAUGUGAUa 2 21 285 306 [dm3:2L:2030223-2030244:+] 0.7721 144 6 -17.26 -0.3088 MIMAT0000119 dme-miR-13b 33377 CG4238 ugaGCAGUUUUACCGA-CACUAu ||| |: || || ||||| gucCGUAAGCCUGCCUAGUGAUa 2 20 120 142 [dm3:2L:2030058-2030080:+] 0.4929 123 0 -12.79 -0.6069 MIMAT0000338 dme-miR-277 33377 CG4238 acagcauggucUAUCACGUAAAu ||| ||||||| gagcaauguuuAUA-UGCAUUUc 2 13 530 551 [dm3:2L:2030468-2030489:+] 0.5130 146 7 -6.92 -0.9648 MIMAT0000341 dme-miR-279 33377 CG4238 aauuaCUCACACCU-AG-AUCAGu | ||||| | || ||||| gcguaGCGUGUGUAGUCAUAGUCg 2 18 229 252 [dm3:2L:2030167-2030190:+] 0.4929 124 0 -16.74 -0.3390 MIMAT0000342 dme-miR-33 33377 CG4238 guuacgCUGAUGUUACGUGGa |||| |||||| | auaauaGACU--AAUGCAACc 2 16 312 330 [dm3:2L:2030250-2030268:+] 0.7721 120 0 -13.78 -0.1046 MIMAT0000359 dme-miR-286 33377 CG4238 ucgugCUCACAAGCCAG-AUCAGu | |||| : ||| ||||| gcguaGCGUGUGUAGUCAUAGUCg 2 19 229 252 [dm3:2L:2030167-2030190:+] 0.4929 126 0 -19.47 -0.3390 MIMAT0000399 dme-miR-308 33377 CG4238 gagugucauauuaggACACUAa |||||| caucaucaaaaggaaUGUGAUa 2 8 285 306 [dm3:2L:2030223-2030244:+] 0.7721 120 6 -10.70 -0.3247 MIMAT0000407 dme-miR-315 33377 CG4238 cgaaagacucguuguUAGUUUu |||||| cgaauauauaucaucAUCAAAa 2 8 274 295 [dm3:2L:2030212-2030233:+] 0.7721 120 6 -5.96 -0.4388 MIMAT0000409 dme-miR-317 33377 CG4238 ugACCUAUGGUG-GUCGACACAAGu || |:|:|| | |||||||| uuUGUCUGCUACGCUACUGUGUUCc 2 23 52 76 [dm3:2L:2029990-2030014:+] 0.4929 161 7 -21.03 -0.2886 MIMAT0000411 dme-miR-2c 33377 CG4238 cgGGUAGUUUCGACCGA-CACUAu ||:| ||: ||| || ||||| guCCGU-AAGCCUGCCUAGUGAUa 2 22 120 142 [dm3:2L:2030058-2030080:+] 0.4929 131 0 -21.00 -0.5996 MIMAT0000411 dme-miR-2c 33377 CG4238 cgGGUAGUUUCGACCGACACUAu :||||||| | |||||| caUCAUCAAA-AGGAAUGUGAUa 2 22 285 306 [dm3:2L:2030223-2030244:+] 0.7721 131 6 -19.22 -0.3140 MIMAT0000411 dme-miR-2c 33377 CG4238 cgGGUAGUUUCGA-CCGAC-ACUAu ::||:| || ||||| |||| uaUUAUUAUCCCUCGGCUGAUGAUc 2 22 174 198 [dm3:2L:2030112-2030136:+] 0.4929 124 0 -16.13 -0.1769 MIMAT0005467 dme-miR-190 33377 CG4238 guUGGUUCUUAUAGUUUGUAUAGa |::|| || | |:||||| aaAUUAA-AACCGAAUAUAUAUCa 2 23 264 286 [dm3:2L:2030202-2030224:+] 0.7721 132 0 -9.91 -0.1152 MIMAT0005490 dme-miR-974 33377 CG4238 uuaugAUGAAGAAACGA-GCGAa | :|| | |||| |||| aucggUUUUUGUCUGCUACGCUa 2 18 45 67 [dm3:2L:2029983-2030005:+] 0.4929 121 0 -11.94 -0.5575 MIMAT0005492 dme-miR-976 33377 CG4238 cguaacuacuauugaUUAGGUu |||||| auuucuucuaucgaaAAUCCAa 2 8 547 568 [dm3:2L:2030485-2030506:+] 0.5017 120 6 -7.51 -0.1476 MIMAT0005507 dme-miR-137 33377 CG4238 gaugcacauaaGAGUUCGUUAu ||:||||||| gcugaugauccCUUAAGCAAUa 2 12 189 210 [dm3:2L:2030127-2030148:+] 0.4929 151 7 -17.10 -0.9856 MIMAT0005515 dme-miR-996 33377 CG4238 ucugCUCGUACUUUAG-AUCAGu | |::|| |:|| ||||| cguaGCGUGUGUAGUCAUAGUCg 2 19 230 252 [dm3:2L:2030168-2030190:+] 0.4929 126 0 -21.78 -0.3474 MIMAT0005016 dme-miR-1003 33377 CG4238 gacACUUAUACAUUUACACUcu | || | | ||||||| ucaUCAAAAGG--AAUGUGAua 3 20 287 306 [dm3:2L:2030225-2030244:+] 0.7721 128 0 -6.79 -0.2944 MIMAT0005017 dme-miR-1004 33377 CG4238 gacacucccUUCACUACACUcu ||| |||||| caucaucaaAAGGAAUGUGAua 3 14 285 306 [dm3:2L:2030223-2030244:+] 0.7721 129 0 -9.04 -0.2995 MIMAT0005019 dme-miR-1006 33377 CG4238 gaUAC--UUAUUCUUUAGCUUAAAu ||| ||| | ||| ||||| | agAUGCAAAUUA-AAACCGAAUAUa 2 22 258 281 [dm3:2L:2030196-2030219:+] 0.7721 130 0 -5.21 -0.2502

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG4238 RAID00003704 dme-miR-13b-3p miRNA MIMAT0000119 CG4238 mRNA 33377 Prediction 0.2202 CG4238 RAID00055282 dme-miR-190-5p miRNA MIMAT0005467 CG4238 mRNA 33377 Prediction 0.1828 CG4238 RAID00295564 dme-miR-974-5p miRNA MIMAT0005490 CG4238 mRNA 33377 Prediction 0.1828 CG4238 RAID00307866 dme-miR-10-3p miRNA MIMAT0012531 CG4238 mRNA 33377 Prediction 0.1828 CG4238 RAID00393225 dme-miR-315-5p miRNA MIMAT0000407 CG4238 mRNA 33377 Prediction 0.2381 CG4238 RAID00443005 dme-miR-6-3p miRNA MIMAT0000111 CG4238 mRNA 33377 Prediction 0.2381 CG4238 RAID01047756 dme-miR-286-3p miRNA MIMAT0000359 CG4238 mRNA 33377 Prediction 0.1828 CG4238 RAID01140878 dme-miR-2c-3p miRNA MIMAT0000411 CG4238 mRNA 33377 Prediction 0.2202 CG4238 RAID01410641 dme-miR-976-3p miRNA MIMAT0005492 CG4238 mRNA 33377 Prediction 0.2202 CG4238 RAID01508876 dme-miR-317-3p miRNA MIMAT0000409 CG4238 mRNA 33377 Prediction 0.2381 CG4238 RAID01878387 dme-miR-2a-3p miRNA MIMAT0000106 CG4238 mRNA 33377 Prediction 0.2202 CG4238 RAID02007094 dme-miR-308-3p miRNA MIMAT0000399 CG4238 mRNA 33377 Prediction 0.2202 CG4238 RAID02175691 dme-miR-2b-3p miRNA MIMAT0000107 CG4238 mRNA 33377 Prediction 0.2202 CG4238 RAID02211989 dme-miR-11-3p miRNA MIMAT0000116 CG4238 mRNA 33377 Prediction 0.2202 CG4238 RAID02350517 dme-mir-2a-1 miRNA MI0000117 CG4238 mRNA 33377 Prediction 0.1828 CG4238 RAID02380407 dme-miR-1003-3p miRNA MIMAT0005016 CG4238 mRNA 33377 Prediction 0.1828 CG4238 RAID02464351 dme-miR-279-3p miRNA MIMAT0000341 CG4238 mRNA 33377 Prediction 0.1828 CG4238 RAID02526456 dme-miR-996-3p miRNA MIMAT0005515 CG4238 mRNA 33377 Prediction 0.1828 CG4238 RAID02662653 dme-miR-1004-3p miRNA MIMAT0005017 CG4238 mRNA 33377 Prediction 0.1828 CG4238 RAID02824568 dme-miR-1013-3p miRNA MIMAT0005026 CG4238 mRNA 33377 Prediction 0.1828 CG4238 RAID03012107 dme-miR-33-5p miRNA MIMAT0000342 CG4238 mRNA 33377 Prediction 0.2381 CG4238 RAID03189241 dme-miR-1006-3p miRNA MIMAT0005019 CG4238 mRNA 33377 Prediction 0.1828 CG4238 RAID03680221 dme-miR-5-5p miRNA MIMAT0000110 CG4238 mRNA 33377 Prediction 0.2202 CG4238 RAID03792653 dme-miR-13a-3p miRNA MIMAT0000118 CG4238 mRNA 33377 Prediction 0.2381 CG4238 RAID03987620 dme-miR-277-3p miRNA MIMAT0000338 CG4238 mRNA 33377 Prediction 0.2455 CG4238 RAID04047242 dme-miR-137-3p miRNA MIMAT0005507 CG4238 mRNA 33377 Prediction 0.2381