DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005481 dme-miR-966 33399 mio ggugugucggguguUGGGUGu |||||| ---cuguccggagcACCCACc 2 8 1 18 [dm3:2L:2220411-2220428:+] 0.6024 120 6 -16.33 -0.1160 MIMAT0005488 dme-miR-972 33399 mio cggaUUUAUAAGCAUAACAUGu ||:|:||| ||||||| ucagAAGUGUUC--AUUGUACu 2 19 101 120 [dm3:2L:2220511-2220530:+] 0.6024 159 7 -15.45 -0.7269 MIMAT0005491 dme-miR-975 33399 mio uauguccuaCAUCCU--UCACAAAu |||| | ||||||| gaugugcccGUAGCAUUAGUGUUUa 2 15 130 154 [dm3:2L:2220540-2220564:+] 0.6024 149 7 -12.86 -1.0481 MIMAT0005491 dme-miR-975 33399 mio uauguccuacaucCUUCACAAau |||||||| uuaaacaaacucaGAAGUGUUca 3 11 91 113 [dm3:2L:2220501-2220523:+] 0.6024 130 0 -9.54 -0.1001 MIMAT0012195 dme-miR-307-as 33399 mio cugaGUGAGU-UGGACCC-ACACu :|||:| || ||| |||| auugUACUUAGACAAGGGAUGUGc 2 19 113 136 [dm3:2L:2220523-2220546:+] 0.6024 121 0 -17.59 -0.3301 MIMAT0000105 dme-miR-1 33399 mio gagGUAUGA-AGAAAUGUAAGgu ||| :| | |||||||| uugCAUUUUAUACUUACAUUCaa 3 20 181 203 [dm3:2L:2220591-2220613:+] 0.6024 138 0 -14.77 -0.3176 MIMAT0000338 dme-miR-277 33399 mio acAGCAUGGUCUA--UCACGUAAAu |: || | | | | ||||||| gcUUUUAGCUGCUCAAUUGCAUUUu 2 22 165 189 [dm3:2L:2220575-2220599:+] 0.6024 148 7 -7.20 -1.1256 MIMAT0000361 dme-miR-87 33399 mio guguggacuuuaaaACGAGUu |||||| uaccagcuuuuagcUGCUCAa 2 8 160 180 [dm3:2L:2220570-2220590:+] 0.6024 120 6 -12.51 -0.1266 MIMAT0000409 dme-miR-317 33399 mio ugaccUAUGGU--GGUCGACACAAGu | || | :||| |||||| gccuuAAACAAACUCAGAAGUGUUCa 2 20 88 113 [dm3:2L:2220498-2220523:+] 0.6024 122 6 -16.83 -0.1155 MIMAT0005483 dme-miR-1002 33399 mio agCGGG-AAACAUAGGUGAUGAAUu ||:| ||| ||:: |||||| cuGCUCAAUUGCAUUUUAUACUUAc 2 23 173 197 [dm3:2L:2220583-2220607:+] 0.6024 133 6 -11.78 -0.2813 MIMAT0005505 dme-miR-988 33399 mio cgcacuccaaacgUUGUUCCCc :||||||| uucauuguacuuaGACAAGGGa 2 10 110 131 [dm3:2L:2220520-2220541:+] 0.6024 141 7 -12.35 -0.8716 MIMAT0005516 dme-miR-252 33399 mio gaggacgccGUGAUCAUGAAUc ||:| ||||||| agaaguguuCAUU-GUACUUAg 2 14 103 123 [dm3:2L:2220513-2220533:+] 0.6024 147 7 -17.33 -0.8424 MIMAT0005516 dme-miR-252 33399 mio gaggacgccgugaucAUGAAUc |||||| cucaauugcauuuuaUACUUAc 2 8 176 197 [dm3:2L:2220586-2220607:+] 0.6024 120 6 -10.83 -0.2887

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score mio RAID00217052 dme-miR-305-5p miRNA MIMAT0000391 mio mRNA 33399 Prediction 0.1828 mio RAID01242957 dme-miR-972-3p miRNA MIMAT0005488 mio mRNA 33399 Prediction 0.1828 mio RAID01402224 dme-miR-1002-5p miRNA MIMAT0005483 mio mRNA 33399 Prediction 0.1828 mio RAID01709070 dme-miR-87-3p miRNA MIMAT0000361 mio mRNA 33399 Prediction 0.2381 mio RAID01791432 dme-miR-1014-3p miRNA MIMAT0005027 mio mRNA 33399 Prediction 0.1828 mio RAID01876629 dme-miR-988-3p miRNA MIMAT0005505 mio mRNA 33399 Prediction 0.2202 mio RAID02040250 dme-miR-317-3p miRNA MIMAT0000409 mio mRNA 33399 Prediction 0.2381 mio RAID02186299 dme-miR-975-5p miRNA MIMAT0005491 mio mRNA 33399 Prediction 0.1828 mio RAID03014461 dme-miR-277-3p miRNA MIMAT0000338 mio mRNA 33399 Prediction 0.2455 mio RAID03033018 dme-miR-252-5p miRNA MIMAT0005516 mio mRNA 33399 Prediction 0.2381 mio RAID03307662 dme-miR-10-3p miRNA MIMAT0012531 mio mRNA 33399 Prediction 0.1828 mio RAID03366775 dme-miR-1-3p miRNA MIMAT0000105 mio mRNA 33399 Prediction 0.1828