DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005509 dme-miR-991 33458 Hrs ugaaagGU-UUGAUG----UUGAAAUu || |||||| ||||||| acgccaCAUAACUACAGCUAACUUUAc 2 17 150 176 [dm3:2L:2741060-2741086:+] 0.6280 150 7 -14.80 -1.1269 MIMAT0005509 dme-miR-991 33458 Hrs ugaAAGGU----UUGAUGUUGAAAUu ||||| || |:||||||: uuaUUCCACAAUAAAAAUAACUUUGu 2 20 259 284 [dm3:2L:2743344-2743369:+] 0.5219 138 0 -11.77 -0.3083 MIMAT0005018 dme-miR-1005 33458 Hrs gacGCUUAAUUUC--UAAGGUcu | :| ||| | |||||| uaaCCGACUAAUGUUAUUCCAca 3 19 246 268 [dm3:2L:2743331-2743353:+] 0.5604 129 0 -6.90 -0.4060 MIMAT0005018 dme-miR-1005 33458 Hrs gacGCUUAAUUUC--UAAGGUcu | :| ||| | |||||| uaaCCGACUAAUGUUAUUCCAca 3 19 246 268 [dm3:2L:2743331-2743353:+] 0.5604 129 0 -6.90 -0.4219 MIMAT0005022 dme-miR-1009 33458 Hrs gacUUUACAUUGUUA---AAAACUCu ||| |||| | ||||||| aauAAAAAUAACUUUGUAUUUUGAG- 2 21 268 292 [dm3:2L:2743353-2743377:+] 0.4834 151 7 -6.88 -1.0261 MIMAT0011786 dme-miR-2280 33458 Hrs uauaaaaUAACGGU-UCGAUUcu || |:| |||||| acgccacAUAACUACAGCUAAcu 3 16 150 172 [dm3:2L:2741060-2741082:+] 0.6280 126 0 -7.69 -0.1845 MIMAT0011791 dme-miR-2283 33458 Hrs uaacagcauaaGUACUAUAAAAg | | :|||||| aauaaaaauaaCUUUGUAUUUUg 2 13 268 290 [dm3:2L:2743353-2743375:+] 0.4834 128 6 -5.33 -0.3674 MIMAT0012215 dme-miR-2500 33458 Hrs gacuccagguguguGUUUUAGg ||||||| ------------uuCAAAAUCc 2 9 1 10 [dm3:2L:2740911-2740920:+] 0.4945 140 7 -9.81 -0.1139 MIMAT0000105 dme-miR-1 33458 Hrs gaGGUAUGAAG-AAAUGUAAGGu |:| ||||: | ||| ||| agCUA-ACUUUACUAACAAUCCc 2 21 165 186 [dm3:2L:2741075-2741096:+] 0.6280 121 0 -9.06 -0.1393 MIMAT0000108 dme-miR-3 33458 Hrs acucugugugaaacGGGUCACu ||||||| gcugcguagcaaaaCCCAGUGa 2 9 57 78 [dm3:2L:2740967-2740988:+] 0.5372 140 7 -17.20 -1.2046 MIMAT0000319 dme-miR-263a 33458 Hrs cacuuaaGAAG-GUCACGGUAAUUg || | | ||||||||| uccggccCUGCGCUUUGCCAUUAAu 2 18 8 32 [dm3:2L:2740918-2740942:+] 0.5372 152 7 -16.13 -1.1248 MIMAT0000401 dme-miR-309 33458 Hrs auccuguUUGAAAUGGGUCACg |:| |||||||| gcugcguAGCAAAACCCAGUGa 2 16 57 78 [dm3:2L:2740967-2740988:+] 0.5372 147 7 -17.26 -1.2046 MIMAT0000410 dme-miR-318 33458 Hrs acucuauUUGUUUCGGGUCACu |:|||| ||||||| gcugcguAGCAAAACCCAGUGa 2 16 57 78 [dm3:2L:2740967-2740988:+] 0.5372 163 7 -20.90 -1.2031 MIMAT0005520 dme-miR-1000 33458 Hrs ugacgacacuguccUGUUAUa |||||| acuaauguuauuccACAAUAa 2 8 252 272 [dm3:2L:2743337-2743357:+] 0.5219 120 6 -7.67 -0.2557 MIMAT0005520 dme-miR-1000 33458 Hrs ugacgacacuguccUGUUAUa |||||| acuaauguuauuccACAAUAa 2 8 252 272 [dm3:2L:2743337-2743357:+] 0.5219 120 6 -7.67 -0.2454

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Hrs RAID01831541 dme-miR-263a-5p miRNA MIMAT0000319 Hrs mRNA 33458 Prediction 0.1828 Hrs RAID01900349 dme-miR-3-3p miRNA MIMAT0000108 Hrs mRNA 33458 Prediction 0.1828 Hrs RAID02551805 dme-miR-1009-3p miRNA MIMAT0005022 Hrs mRNA 33458 Prediction 0.1828 Hrs RAID02615117 dme-miR-1000-5p miRNA MIMAT0005520 Hrs mRNA 33458 Prediction 0.2202 Hrs RAID03191716 dme-miR-1-3p miRNA MIMAT0000105 Hrs mRNA 33458 Prediction 0.1828 Hrs RAID03649966 dme-miR-318-3p miRNA MIMAT0000410 Hrs mRNA 33458 Prediction 0.1828 Hrs RAID04059178 dme-miR-309-3p miRNA MIMAT0000401 Hrs mRNA 33458 Prediction 0.1828