DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 33519 CG17260 auaguaaAGUAU-ACG-UUGC--AUUUAUgu |:||| ||| || | |||||| aauacgcUUAUAUUGCUAAAGAUUAAAUAaa 3 21 62 92 [dm3:2L:3038750-3038780:+] 0.6037 137 0 -6.71 -0.4811 MIMAT0011791 dme-miR-2283 33519 CG17260 uaACAGCAUA--AGUACUAUAAAAg ||| |||| |:|| :|||||| acUGU-GUAUGGUUAU-GUAUUUUg 2 22 26 48 [dm3:2L:3038714-3038736:+] 0.6037 144 6 -9.53 -0.1140 MIMAT0012198 dme-miR-2491 33519 CG17260 ucguugacguuuccgUUGUCGc |||||| gaugaucgacucaagAACAGCu 2 8 3 24 [dm3:2L:3038691-3038712:+] 0.6763 120 6 -14.54 -0.1329 MIMAT0000106 dme-miR-2a 33519 CG17260 cgAGUAGUU-UCGACCGACAC-UAu ||| || |||| ||||| || acUCAAGAACAGCUUACUGUGUAUg 2 22 11 35 [dm3:2L:3038699-3038723:+] 0.6763 128 0 -18.03 -1.1729 MIMAT0000106 dme-miR-2a 33519 CG17260 cgaguaguuucgaccGACACUAu :|||||| guaugguuauguauuUUGUGAUu 2 9 31 53 [dm3:2L:3038719-3038741:+] 0.6037 124 6 -9.94 -0.1502 MIMAT0000107 dme-miR-2b 33519 CG17260 cgaggaguuucgaccGACACUAu :|||||| guaugguuauguauuUUGUGAUu 2 9 31 53 [dm3:2L:3038719-3038741:+] 0.6037 124 6 -8.95 -0.1502 MIMAT0000107 dme-miR-2b 33519 CG17260 cgagGAGUU----UCGACCGACAC-UAu ||||| |||| ||||| || ucgaCUCAAGAACAGCUUACUGUGUAUg 2 20 8 35 [dm3:2L:3038696-3038723:+] 0.6763 122 0 -18.52 -1.1729 MIMAT0000111 dme-miR-6 33519 CG17260 uuuUUCUUGUCG-GUGACAC-UAu ||||||||| :|||||| || cucAAGAACAGCUUACUGUGUAUg 2 20 12 35 [dm3:2L:3038700-3038723:+] 0.6763 146 0 -24.83 -1.1783 MIMAT0000111 dme-miR-6 33519 CG17260 uuuuucuugucgguGACACUAu :|||||| uaugguuauguauuUUGUGAUu 2 9 32 53 [dm3:2L:3038720-3038741:+] 0.6037 124 6 -8.95 -0.1531 MIMAT0000116 dme-miR-11 33519 CG17260 cguucuUGAGUCUGACACUAc |: :| :|||||| augguuAUGUAUUUUGUGAUu 2 16 33 53 [dm3:2L:3038721-3038741:+] 0.6037 127 6 -7.05 -0.1502 MIMAT0000116 dme-miR-11 33519 CG17260 cgUUCUUG-AGUCUGACAC-UAc |||||| | |||||| || ucAAGAACAGCUUACUGUGUAUg 2 20 13 35 [dm3:2L:3038701-3038723:+] 0.6763 126 0 -22.24 -1.1747 MIMAT0000118 dme-miR-13a 33519 CG17260 ugAGUAGU-UUUACCGACACUAu | :|:| : || :|||||| uaUGGUUAUGUAU-UUUGUGAUu 2 21 32 53 [dm3:2L:3038720-3038741:+] 0.6037 125 6 -9.98 -0.1516 MIMAT0000119 dme-miR-13b 33519 CG17260 ugAGCAGU-UUUACCGACACUAu | ||:| : || :|||||| uaUGGUUAUGUAU-UUUGUGAUu 2 21 32 53 [dm3:2L:3038720-3038741:+] 0.6037 129 6 -10.20 -0.1516 MIMAT0000399 dme-miR-308 33519 CG17260 gaGUGUC-AUAU-UAGGACACUAa :|::| |||: ||::|||||| ugUAUGGUUAUGUAUUUUGUGAUu 2 21 30 53 [dm3:2L:3038718-3038741:+] 0.6037 146 6 -15.26 -0.1444 MIMAT0000406 dme-miR-314 33519 CG17260 ggcUUGAAUAACCGAGCUUAu :|:|| | :|||||| uguGAUUUCU--AUUCGAAUa 2 19 47 65 [dm3:2L:3038735-3038753:+] 0.6037 127 6 -10.04 -0.1773 MIMAT0000411 dme-miR-2c 33519 CG17260 cgGGUAGUU-UCGACCGACAC-UAu :|| || |||| ||||| || acUCAAGAACAGCUUACUGUGUAUg 2 22 11 35 [dm3:2L:3038699-3038723:+] 0.6763 124 0 -17.10 -1.1729 MIMAT0000411 dme-miR-2c 33519 CG17260 cggguaguuucgaccGACACUAu :|||||| guaugguuauguauuUUGUGAUu 2 9 31 53 [dm3:2L:3038719-3038741:+] 0.6037 124 6 -9.11 -0.1502 MIMAT0005480 dme-miR-965 33519 CG17260 uuccccuuuucgaUAUGCGAAu |||||||| gauuucuauucgaAUACGCUUa 2 10 50 71 [dm3:2L:3038738-3038759:+] 0.6037 145 7 -11.97 -1.2867 MIMAT0005504 dme-miR-987 33519 CG17260 guAGUU-AGGUC-UGAUAAAUGAAAu ||:| || || || : ||||| | gaUCGACUCAAGAACAGCUUACUGUg 2 23 6 31 [dm3:2L:3038694-3038719:+] 0.6763 128 0 -11.20 -0.1972

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG17260 RAID00031421 dme-miR-987-5p miRNA MIMAT0005504 CG17260 mRNA 33519 Prediction 0.1828 CG17260 RAID00469045 dme-miR-306-5p miRNA MIMAT0000393 CG17260 mRNA 33519 Prediction 0.1828 CG17260 RAID00587390 dme-miR-13a-3p miRNA MIMAT0000118 CG17260 mRNA 33519 Prediction 0.1828 CG17260 RAID00698009 dme-miR-11-3p miRNA MIMAT0000116 CG17260 mRNA 33519 Prediction 0.2202 CG17260 RAID01030609 dme-miR-13b-3p miRNA MIMAT0000119 CG17260 mRNA 33519 Prediction 0.1828 CG17260 RAID01290446 dme-miR-314-3p miRNA MIMAT0000406 CG17260 mRNA 33519 Prediction 0.2381 CG17260 RAID01942942 dme-miR-6-3p miRNA MIMAT0000111 CG17260 mRNA 33519 Prediction 0.1828 CG17260 RAID02065128 dme-miR-965-3p miRNA MIMAT0005480 CG17260 mRNA 33519 Prediction 0.2381 CG17260 RAID02563014 dme-miR-308-3p miRNA MIMAT0000399 CG17260 mRNA 33519 Prediction 0.1828 CG17260 RAID02903848 dme-miR-2a-3p miRNA MIMAT0000106 CG17260 mRNA 33519 Prediction 0.1828 CG17260 RAID03339745 dme-miR-2b-3p miRNA MIMAT0000107 CG17260 mRNA 33519 Prediction 0.1828 CG17260 RAID03540153 dme-mir-13b-1 miRNA MI0000134 CG17260 mRNA 33519 Prediction 0.1828 CG17260 RAID03620399 dme-miR-2c-3p miRNA MIMAT0000411 CG17260 mRNA 33519 Prediction 0.1828 CG17260 RAID03655472 dme-mir-2a-1 miRNA MI0000117 CG17260 mRNA 33519 Prediction 0.1828