DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 33705 jet auaGUAAAGUAUACGUUGCAUUUAUGu || | | | ||| :|||||||| aucCAAUACUUUUGC--UGUAAAUACa 2 25 251 275 [dm3:2L:4948313-4948337:-] 0.5323 161 7 -13.59 -0.3942 MIMAT0000343 dme-miR-280 33705 jet auaGUAAAGUAUACGUUGCAUUUAUGu || | | | ||| :|||||||| aucCAAUACUUUUGC--UGUAAAUACa 2 25 57 81 [dm3:2L:4948313-4948337:-] 0.5323 161 7 -13.59 -0.4317 MIMAT0000344 dme-miR-281-1* 33705 jet ugacagcugccugucGAGAGAa |||||| uacuaacuuauucauCUCUCUc 2 8 358 379 [dm3:2L:4948209-4948230:-] 0.4873 120 6 -12.99 -0.1082 MIMAT0000344 dme-miR-281-1* 33705 jet ugacagcugccugucGAGAGAa |||||| uacuaacuuauucauCUCUCUc 2 8 164 185 [dm3:2L:4948209-4948230:-] 0.4873 120 6 -12.99 -0.1215 MIMAT0005502 dme-miR-985 33705 jet acGGGCUG-GUAAC-CUUGUAAac :|: || ||||| |||||| aaUCUUACACAUUGUUAACAUUaa 3 21 314 337 [dm3:2L:4948251-4948274:-] 0.5323 138 0 -11.83 -0.1992 MIMAT0005502 dme-miR-985 33705 jet acGGGCUG-GUAAC-CUUGUAAac :|: || ||||| |||||| aaUCUUACACAUUGUUAACAUUaa 3 21 120 143 [dm3:2L:4948251-4948274:-] 0.5323 138 0 -11.83 -0.2218 MIMAT0005026 dme-miR-1013 33705 jet gcucAAGCCGUAUGAAAAUa ||: : |||||||| acgcUUUAAUUUACUUUUAa 2 17 290 309 [dm3:2L:4948279-4948298:-] 0.5323 148 7 -7.23 -1.2351 MIMAT0005026 dme-miR-1013 33705 jet gcucAAGCCGUAUGAAAAUa ||: : |||||||| acgcUUUAAUUUACUUUUAa 2 17 96 115 [dm3:2L:4948279-4948298:-] 0.5323 148 7 -7.23 -1.2496 MIMAT0012196 dme-miR-2489 33705 jet ugacguUUAUGUU--GUAUGUUAu ||| :|: ::|||||| aacauuAAUUUAGGCUGUACAAUa 2 17 330 353 [dm3:2L:4948235-4948258:-] 0.5323 131 6 -8.88 -0.1610 MIMAT0012196 dme-miR-2489 33705 jet ugacguUUAUGUU--GUAUGUUAu ||| :|: ::|||||| aacauuAAUUUAGGCUGUACAAUa 2 17 136 159 [dm3:2L:4948235-4948258:-] 0.5323 131 6 -8.88 -0.1800 MIMAT0000319 dme-miR-263a 33705 jet cacuuaagaaggucacgGUAAUUg |||||| aucuuacacauuguuaaCAUUAAu 2 8 315 338 [dm3:2L:4948250-4948273:-] 0.5323 120 6 -10.08 -0.1285 MIMAT0000319 dme-miR-263a 33705 jet cacuuaagaaggucacgGUAAUUg |||||| aucuuacacauuguuaaCAUUAAu 2 8 121 144 [dm3:2L:4948250-4948273:-] 0.5323 120 6 -10.08 -0.1440 MIMAT0000349 dme-miR-281-2* 33705 jet ugacagcugccuaucGAGAGAa |||||| uacuaacuuauucauCUCUCUc 2 8 358 379 [dm3:2L:4948209-4948230:-] 0.4873 120 6 -8.40 -0.1082 MIMAT0000349 dme-miR-281-2* 33705 jet ugacagcugccuaucGAGAGAa |||||| uacuaacuuauucauCUCUCUc 2 8 164 185 [dm3:2L:4948209-4948230:-] 0.4873 120 6 -8.40 -0.1215 MIMAT0000390 dme-miR-304 33705 jet gaGUGUAA--AUGUUU-AACUCUAAu | ::|| |:||:: |||||||| cgCCUGUUCCUGCAGGUUUGAGAUUa 2 22 174 199 [dm3:2L:4948389-4948414:-] 0.6032 155 7 -16.79 -0.9849 MIMAT0005504 dme-miR-987 33705 jet guaguuaggucugaUAAAUGAAAu ||||||||| caugggacgcuuuaAUUUACUUUu 2 11 284 307 [dm3:2L:4948281-4948304:-] 0.5323 150 7 -9.90 -1.1004 MIMAT0005504 dme-miR-987 33705 jet guaguuaggucugaUAAAUGAAAu ||||||||| caugggacgcuuuaAUUUACUUUu 2 11 90 113 [dm3:2L:4948281-4948304:-] 0.5323 150 7 -9.90 -1.1267 MIMAT0005506 dme-miR-989 33705 jet caaGGUGAUGCAGUGUAGUGu | |||::| ||||||| ugcCAACUGUGCAACAUCACc 2 19 154 174 [dm3:2L:4948414-4948434:-] 0.6741 158 7 -20.59 -0.5434 MIMAT0005519 dme-miR-999 33705 jet ucUGUGUCAGAAUG----UCAAUUGu :| :| |||||| |||||| aaGCUUAAUCUUACACAUUGUUAACa 2 21 308 333 [dm3:2L:4948255-4948280:-] 0.5323 123 6 -14.22 -0.3793 MIMAT0005519 dme-miR-999 33705 jet ucUGUGUCAGAAUG----UCAAUUGu :| :| |||||| |||||| aaGCUUAAUCUUACACAUUGUUAACa 2 21 114 139 [dm3:2L:4948255-4948280:-] 0.5323 123 6 -14.22 -0.4151

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score jet RAID00007674 dme-miR-282-5p miRNA MIMAT0000346 jet mRNA 33705 Prediction 0.2202 jet RAID00413926 dme-miR-999-3p miRNA MIMAT0005519 jet mRNA 33705 Prediction 0.2381 jet RAID01077426 dme-miR-281-2-5p miRNA MIMAT0000349 jet mRNA 33705 Prediction 0.1828 jet RAID01861968 dme-miR-304-5p miRNA MIMAT0000390 jet mRNA 33705 Prediction 0.1828 jet RAID02720848 dme-miR-989-3p miRNA MIMAT0005506 jet mRNA 33705 Prediction 0.1828 jet RAID02867784 dme-miR-4-3p miRNA MIMAT0000109 jet mRNA 33705 Prediction 0.1828 jet RAID03222498 dme-miR-263a-5p miRNA MIMAT0000319 jet mRNA 33705 Prediction 0.1828 jet RAID03493488 dme-miR-1013-3p miRNA MIMAT0005026 jet mRNA 33705 Prediction 0.1828 jet RAID03577527 dme-miR-987-5p miRNA MIMAT0005504 jet mRNA 33705 Prediction 0.2202 jet RAID04022009 dme-miR-1000-5p miRNA MIMAT0005520 jet mRNA 33705 Prediction 0.1828